CsGy1G016810.1 (mRNA) Cucumber (Gy14) v2.1

Overview
NameCsGy1G016810.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description30S ribosomal protein S16, chloroplastic
LocationGy14Chr1: 14132502 .. 14133131 (+)
Sequence length318
RNA-Seq ExpressionCsGy1G016810.1
SyntenyCsGy1G016810.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCAAGGCAAGGATAAAGGATCCCGGAACAAGTAAAAATCTTTTTCAATTGTCTCAATAACTAAACTAGATCAGAATGAAGAATCGAAATAGATTCTAACGGAGACAGGCAAAAATAAAGAGGTTAGAGACCGCTCAATAAATGAAATGCTTAAGCTTAAGGTTTTTTTCCTTTGCGTGAGAGTTATCCAACTTGAGTTATGGGGATAAGAATGAGTTTTTTTTTCAAAAGAAAAACAAAAGAATAAGAAAAAATTATTTAAATCATAGTCTAATTGATTTAATAATCTATGGATCTATTTGACATTAATTAGAATTCTATACATAACTTTGAATTTCCTCGAGCCGTACGAGGAGAAAACTTCTTATACGGTTCTGGGGGGGGGTATTGTTAATTTACATCTATCCCAATGAGCTGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTCGTAAAGTGGGTTTTTATGATCCGATAAAGAATCAAACCTATTTAAATGTTCCTGCGATTCTATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGTGTTTTTACGGAACTTCACCTTAATCAATAA

mRNA sequence

ATGATTCAAGGCAAGGATAAAGGATCCCGGAACAAAATTCTATACATAACTTTGAATTTCCTCGAGCCGTACGAGGAGAAAACTTCTTATACGGTTCTGGGGGGGGCTGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTCGTAAAGTGGGTTTTTATGATCCGATAAAGAATCAAACCTATTTAAATGTTCCTGCGATTCTATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGTGTTTTTACGGAACTTCACCTTAATCAATAA

Coding sequence (CDS)

ATGATTCAAGGCAAGGATAAAGGATCCCGGAACAAAATTCTATACATAACTTTGAATTTCCTCGAGCCGTACGAGGAGAAAACTTCTTATACGGTTCTGGGGGGGGCTGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTCGTAAAGTGGGTTTTTATGATCCGATAAAGAATCAAACCTATTTAAATGTTCCTGCGATTCTATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGTGTTTTTACGGAACTTCACCTTAATCAATAA

Protein sequence

MIQGKDKGSRNKILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ*
Homology
[Close]
BLAST of CsGy1G016810.1 vs. ExPASy Swiss-Prot
Match: Q2QDA6 (30S ribosomal protein S16, chloroplastic OS=Cucumis sativus OX=3659 GN=rps16 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 8.5e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 16  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 75

Query: 96  GVFTELHLNQ 106
           GVFTELHLNQ
Sbjct: 76  GVFTELHLNQ 85

[Close]
BLAST of CsGy1G016810.1 vs. ExPASy Swiss-Prot
Match: Q2L8Y7 (30S ribosomal protein S16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps16 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.0e-32
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRI+AIDVRSRREGRDLRKVGFYDPI NQTYLNVPAILYFLEKGAQPT TVHDILKKA
Sbjct: 15  AVYRIVAIDVRSRREGRDLRKVGFYDPINNQTYLNVPAILYFLEKGAQPTATVHDILKKA 74

Query: 96  GVFTELHLNQ 106
           GVFTEL LNQ
Sbjct: 75  GVFTELTLNQ 84

[Close]
BLAST of CsGy1G016810.1 vs. ExPASy Swiss-Prot
Match: A0ZZ17 (30S ribosomal protein S16, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps16 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.8e-32
Identity = 65/70 (92.86%), Postives = 66/70 (94.29%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRI+ IDVRSRREGRDLRKVGFYDPI NQTYLNVPAILYFLEKGAQPT TVHDILKKA
Sbjct: 15  AVYRIVVIDVRSRREGRDLRKVGFYDPINNQTYLNVPAILYFLEKGAQPTATVHDILKKA 74

Query: 96  GVFTELHLNQ 106
           GVFTEL LNQ
Sbjct: 75  GVFTELTLNQ 84

[Close]
BLAST of CsGy1G016810.1 vs. ExPASy Swiss-Prot
Match: Q0ZJ38 (30S ribosomal protein S16, chloroplastic OS=Vitis vinifera OX=29760 GN=rps16 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.7e-31
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRI+AID RSRREGRDLRKVGFYDPIKNQTY NVPAILYFLEKGAQPTGTVHDI KKA
Sbjct: 15  AVYRIVAIDARSRREGRDLRKVGFYDPIKNQTYSNVPAILYFLEKGAQPTGTVHDISKKA 74

Query: 96  GVFTELHLNQ 106
            VFTEL LNQ
Sbjct: 75  EVFTELRLNQ 84

[Close]
BLAST of CsGy1G016810.1 vs. ExPASy Swiss-Prot
Match: Q6EW66 (30S ribosomal protein S16, chloroplastic OS=Nymphaea alba OX=34301 GN=rps16 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.7e-31
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           A YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDI KKA
Sbjct: 15  ATYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDISKKA 74

Query: 96  GVFTELHLNQ 106
            VF EL +NQ
Sbjct: 75  EVFKELRVNQ 84

[Close]
BLAST of CsGy1G016810.1 vs. NCBI nr
Match: YP_009674373.1 (ribosomal protein S16 [Siraitia grosvenorii] >YP_009751804.1 ribosomal protein S16 [Indofevillea khasiana] >YP_009752141.1 ribosomal protein S16 [Linnaeosicyos amara] >YP_009752225.1 ribosomal protein S16 [Trichosanthes baviensis] >YP_009752309.1 ribosomal protein S16 [Bryonia marmorata] >YP_009752563.1 ribosomal protein S16 [Trichosanthes homophylla] >YP_009752817.1 ribosomal protein S16 [Baijiania yunnanensis] >YP_009753156.1 ribosomal protein S16 [Trichosanthes truncata] >YP_009753240.1 ribosomal protein S16 [Nothoalsomitra suberosa] >YP_009753771.1 ribosomal protein S16 [Trichosanthes pilosa] >YP_010119716.1 ribosomal protein S16 [Hemsleya zhejiangensis] >YP_247581.1 ribosomal protein S16 [Cucumis sativus] >AHM88696.1 ribosomal protein S16 [Lagenaria siceraria] >ALF03283.1 ribosomal protein S16 [Cucumis sativus var. hardwickii] >QIT04032.1 ribosomal protein S16 [Luffa aegyptiaca] >QIT05044.1 ribosomal protein S16 [Trichosanthes kirilowii] >QJD26627.1 ribosomal protein S16 [Trichosanthes rosthornii] >QSQ72292.1 ribosomal protein S16 [Benincasa hispida] >QZL38575.1 ribosomal protein S16 [Citrullus naudinianus] >QZL38663.1 ribosomal protein S16 [Citrullus ecirrhosus])

HSP 1 Score: 144 bits (364), Expect = 1.04e-42
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 15  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 74

Query: 96  GVFTELHLNQ 105
           GVFTELHLNQ
Sbjct: 75  GVFTELHLNQ 84

[Close]
BLAST of CsGy1G016810.1 vs. NCBI nr
Match: Q2QDA6.1 (RecName: Full=30S ribosomal protein S16, chloroplastic [Cucumis sativus] >AAZ94634.1 ribosomal protein S16 [Cucumis sativus] >QKX48541.1 ribosomal protein S16 [Luffa aegyptiaca])

HSP 1 Score: 144 bits (364), Expect = 1.07e-42
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 16  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 75

Query: 96  GVFTELHLNQ 105
           GVFTELHLNQ
Sbjct: 76  GVFTELHLNQ 85

[Close]
BLAST of CsGy1G016810.1 vs. NCBI nr
Match: YP_009738183.1 (ribosomal protein S16 [Siraitia siamensis] >QIB71487.1 ribosomal protein S16 [Siraitia grosvenorii] >QIB71576.1 ribosomal protein S16 [Siraitia siamensis] >QNM38513.1 ribosomal protein S16 [Lagenaria siceraria var. microcarpa])

HSP 1 Score: 144 bits (364), Expect = 1.10e-42
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 17  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 76

Query: 96  GVFTELHLNQ 105
           GVFTELHLNQ
Sbjct: 77  GVFTELHLNQ 86

[Close]
BLAST of CsGy1G016810.1 vs. NCBI nr
Match: YP_009753071.1 (ribosomal protein S16 [Corallocarpus boehmii] >QIT06143.1 ribosomal protein S16 [Corallocarpus boehmii])

HSP 1 Score: 144 bits (364), Expect = 1.21e-42
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 15  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 74

Query: 96  GVFTELHLNQ 105
           GVFTELHLNQ
Sbjct: 75  GVFTELHLNQ 84

[Close]
BLAST of CsGy1G016810.1 vs. NCBI nr
Match: YP_010131076.1 (ribosomal protein S16 [Benincasa hispida] >QPZ75723.1 ribosomal protein S16 [Benincasa hispida])

HSP 1 Score: 144 bits (364), Expect = 1.53e-42
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 28  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 87

Query: 96  GVFTELHLNQ 105
           GVFTELHLNQ
Sbjct: 88  GVFTELHLNQ 97

[Close]
BLAST of CsGy1G016810.1 vs. ExPASy TrEMBL
Match: A0A218KG12 (30S ribosomal protein S16, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=rps16 PE=3 SV=1)

HSP 1 Score: 144 bits (364), Expect = 5.03e-43
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 15  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 74

Query: 96  GVFTELHLNQ 105
           GVFTELHLNQ
Sbjct: 75  GVFTELHLNQ 84

[Close]
BLAST of CsGy1G016810.1 vs. ExPASy TrEMBL
Match: A0A6H0ETM9 (30S ribosomal protein S16, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rps16 PE=3 SV=1)

HSP 1 Score: 144 bits (364), Expect = 5.03e-43
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 15  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 74

Query: 96  GVFTELHLNQ 105
           GVFTELHLNQ
Sbjct: 75  GVFTELHLNQ 84

[Close]
BLAST of CsGy1G016810.1 vs. ExPASy TrEMBL
Match: A0A1X9Q1R7 (30S ribosomal protein S16, chloroplastic OS=Cucumis sativus OX=3659 GN=rps16 PE=3 SV=1)

HSP 1 Score: 144 bits (364), Expect = 5.03e-43
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 15  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 74

Query: 96  GVFTELHLNQ 105
           GVFTELHLNQ
Sbjct: 75  GVFTELHLNQ 84

[Close]
BLAST of CsGy1G016810.1 vs. ExPASy TrEMBL
Match: X2F3D0 (30S ribosomal protein S16, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps16 PE=3 SV=1)

HSP 1 Score: 144 bits (364), Expect = 5.03e-43
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 15  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 74

Query: 96  GVFTELHLNQ 105
           GVFTELHLNQ
Sbjct: 75  GVFTELHLNQ 84

[Close]
BLAST of CsGy1G016810.1 vs. ExPASy TrEMBL
Match: A0A6H0ERN1 (30S ribosomal protein S16, chloroplastic OS=Trichosanthes baviensis OX=1054457 GN=rps16 PE=3 SV=1)

HSP 1 Score: 144 bits (364), Expect = 5.03e-43
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 15  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 74

Query: 96  GVFTELHLNQ 105
           GVFTELHLNQ
Sbjct: 75  GVFTELHLNQ 84

[Close]
BLAST of CsGy1G016810.1 vs. TAIR 10
Match: ATCG00050.1 (ribosomal protein S16 )

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 0 

Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRI+AIDVR RREGRDL KVGFYDPI NQT+LN+ AIL FL+KGAQPT T HDI KKA
Sbjct: 15  AVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSAILDFLKKGAQPTRTAHDISKKA 74

Query: 96  GVFTE 101
           G+FTE
Sbjct: 75  GIFTE 79

[Close]
BLAST of CsGy1G016810.1 vs. TAIR 10
Match: AT4G34620.1 (small subunit ribosomal protein 16 )

HSP 1 Score: 57.8 bits (138), Expect = 6.3e-09
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 38 YRIIAIDVRSRREGRDLRKVGFYDPIK-----NQTYLNVPAILYFLEKGAQPTGTVHDIL 97
          YR++  D +SRR+G+ +  +GFYDP++     ++  L    I Y+L  GAQPT TV  +L
Sbjct: 18 YRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIKYWLSVGAQPTDTVESML 77

[Close]
BLAST of CsGy1G016810.1 vs. TAIR 10
Match: AT5G56940.1 (Ribosomal protein S16 family protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.2e-05
Identity = 22/65 (33.85%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 38 YRIIAIDVRSRREGRDLRKVGFYDPIKNQ-----TYLNVPAILYFLEKGAQPTGTVHDIL 97
          +R++A D RS R+G+ L  +G+++P+  Q       L    I Y+L  GAQP+  V  +L
Sbjct: 18 FRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIKYWLSVGAQPSDPVQRLL 77

The following BLAST results are available for this feature:
BLAST of CsGy1G016810.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q2QDA68.5e-35100.0030S ribosomal protein S16, chloroplastic OS=Cucumis sativus OX=3659 GN=rps16 PE=... [more]
Q2L8Y73.0e-3294.2930S ribosomal protein S16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps16 ... [more]
A0ZZ178.8e-3292.8630S ribosomal protein S16, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1... [more]
Q0ZJ385.7e-3191.4330S ribosomal protein S16, chloroplastic OS=Vitis vinifera OX=29760 GN=rps16 PE=... [more]
Q6EW669.7e-3191.4330S ribosomal protein S16, chloroplastic OS=Nymphaea alba OX=34301 GN=rps16 PE=3... [more]
BLAST of CsGy1G016810.1 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009674373.11.04e-42100.00ribosomal protein S16 [Siraitia grosvenorii] >YP_009751804.1 ribosomal protein S... [more]
Q2QDA6.11.07e-42100.00RecName: Full=30S ribosomal protein S16, chloroplastic [Cucumis sativus] >AAZ946... [more]
YP_009738183.11.10e-42100.00ribosomal protein S16 [Siraitia siamensis] >QIB71487.1 ribosomal protein S16 [Si... [more]
YP_009753071.11.21e-42100.00ribosomal protein S16 [Corallocarpus boehmii] >QIT06143.1 ribosomal protein S16 ... [more]
YP_010131076.11.53e-42100.00ribosomal protein S16 [Benincasa hispida] >QPZ75723.1 ribosomal protein S16 [Ben... [more]
BLAST of CsGy1G016810.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A218KG125.03e-43100.0030S ribosomal protein S16, chloroplastic OS=Cucumis sativus var. hardwickii OX=3... [more]
A0A6H0ETM95.03e-43100.0030S ribosomal protein S16, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=r... [more]
A0A1X9Q1R75.03e-43100.0030S ribosomal protein S16, chloroplastic OS=Cucumis sativus OX=3659 GN=rps16 PE=... [more]
X2F3D05.03e-43100.0030S ribosomal protein S16, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps16... [more]
A0A6H0ERN15.03e-43100.0030S ribosomal protein S16, chloroplastic OS=Trichosanthes baviensis OX=1054457 G... [more]
BLAST of CsGy1G016810.1 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00050.11.1e-2480.00ribosomal protein S16 [more]
AT4G34620.16.3e-0940.00small subunit ribosomal protein 16 [more]
AT5G56940.13.2e-0533.85Ribosomal protein S16 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000307Ribosomal protein S16TIGRFAMTIGR00002TIGR00002coord: 36..98
e-value: 5.0E-22
score: 75.7
IPR000307Ribosomal protein S16PFAMPF00886Ribosomal_S16coord: 37..85
e-value: 2.7E-12
score: 46.6
IPR000307Ribosomal protein S16PANTHERPTHR1291930S RIBOSOMAL PROTEIN S16coord: 36..100
IPR023803Ribosomal protein S16 domain superfamilyGENE3D3.30.1320.10coord: 33..105
e-value: 3.0E-22
score: 80.0
IPR023803Ribosomal protein S16 domain superfamilySUPERFAMILY54565Ribosomal protein S16coord: 36..102
NoneNo IPR availablePANTHERPTHR12919:SF3830S RIBOSOMAL PROTEIN S16, CHLOROPLASTICcoord: 36..100

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy1G016810CsGy1G016810gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G016810.1.exon1CsGy1G016810.1.exon1exon
CsGy1G016810.1.exon2CsGy1G016810.1.exon2exon
CsGy1G016810.1.exon3CsGy1G016810.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.CsGy1G016810.1cds.CsGy1G016810.1CDS
cds.CsGy1G016810.1cds.CsGy1G016810.1_2CDS
cds.CsGy1G016810.1cds.CsGy1G016810.1_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy1G016810.1CsGy1G016810.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
molecular_function GO:0003735 structural constituent of ribosome