CsGy1G013405.1 (mRNA) Cucumber (Gy14) v2.1

Overview
NameCsGy1G013405.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr1: 8785518 .. 8785817 (+)
Sequence length279
RNA-Seq ExpressionCsGy1G013405.1
SyntenyCsGy1G013405.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATGAAGGCATTTTTTCAAACACCTTCAAGTGCACGATCGAACTTATTGTTACTCAGAAAAGGACCTTTCTACTCATTCTAGTCGCCACCCTCTCTTCAACAAGTCGTCATCGTCCGCTTTGGGTCTCGTTCGTTTGTTGACATGTCTCCTAGTCGCCATCTCGACACAGCCGTAGATTGAAAGCTCAACGACTATTTGACTCTCTTACATCCATTCCTTGCACCATTGCCAACTCCAGTTTTCCTTCGCCGTTCAAGTCGCACCATCATAGCAGGTGTTTCACCGGATTATAG

mRNA sequence

ATGGAAAATGAAGGCATTTTTTCAAACACCTTCAAGTGCACGATCGAACTTATTGTTACTCAGAAAAGGACCTTTCTACTCATTCTAGTCGCCACCCTCTCTTCAACAAGTCGTCATCGTCCGCTTTGGGTCTCGTTCTCGCCATCTCGACACAGCCGTAGATTGAAAGCTCAACGACTATTTGACTCTCTTACATCCATTCCTTGCACCATTGCCAACTCCAGTTTTCCTTCGCCGTTCAAGTCGCACCATCATAGCAGGTGTTTCACCGGATTATAG

Coding sequence (CDS)

ATGGAAAATGAAGGCATTTTTTCAAACACCTTCAAGTGCACGATCGAACTTATTGTTACTCAGAAAAGGACCTTTCTACTCATTCTAGTCGCCACCCTCTCTTCAACAAGTCGTCATCGTCCGCTTTGGGTCTCGTTCTCGCCATCTCGACACAGCCGTAGATTGAAAGCTCAACGACTATTTGACTCTCTTACATCCATTCCTTGCACCATTGCCAACTCCAGTTTTCCTTCGCCGTTCAAGTCGCACCATCATAGCAGGTGTTTCACCGGATTATAG

Protein sequence

MENEGIFSNTFKCTIELIVTQKRTFLLILVATLSSTSRHRPLWVSFSPSRHSRRLKAQRLFDSLTSIPCTIANSSFPSPFKSHHHSRCFTGL*
Homology
[Close]
BLAST of CsGy1G013405.1 vs. NCBI nr
Match: KAE8652756.1 (hypothetical protein Csa_023790, partial [Cucumis sativus])

HSP 1 Score: 100 bits (250), Expect = 5.45e-26
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 47 SPSRHSRRLKAQRLFDSLTSIPCTIANSSFPSPFKSHHHSRCFTGL 92
          SPSRHSRRLKAQRLFDSLTSIPCTIANSSFPSPFKSHHHSRCFTGL
Sbjct: 1  SPSRHSRRLKAQRLFDSLTSIPCTIANSSFPSPFKSHHHSRCFTGL 46

The following BLAST results are available for this feature:
BLAST of CsGy1G013405.1 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy1G013405.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652756.15.45e-26100.00hypothetical protein Csa_023790, partial [Cucumis sativus][more]
BLAST of CsGy1G013405.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsGy1G013405.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy1G013405CsGy1G013405gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G013405.1.exon1CsGy1G013405.1.exon1exon
CsGy1G013405.1.exon2CsGy1G013405.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.CsGy1G013405.1cds.CsGy1G013405.1CDS
cds.CsGy1G013405.1cds.CsGy1G013405.1_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy1G013405.1CsGy1G013405.1-proteinpolypeptide