CsGy1G008800.1 (mRNA) Cucumber (Gy14) v2.1

Overview
NameCsGy1G008800.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr1: 5506916 .. 5507763 (+)
Sequence length633
RNA-Seq ExpressionCsGy1G008800.1
SyntenyCsGy1G008800.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACGACCTCGCCTCCCTCCAGGCTCCACTCCTGCCCATCAGACCTTGCGACGGCGACGGCTTCGATGGTTCACGAGGATAAAATATTGTCTCTAATCATATACTGCAGCTTTCACCAAATTTCGCGGCTCTGATTTCCGGGGATTAAATGATCAGGTCAGCAATTTCAGGGGATTGAAAAGTGGTGAGATTTTGAAATTTGGAGTAGGTGAAGACATGGCAGAAGTTATATATTGTGTGTATGCTAATAGAGGCGTTGACGGGGTTGTAGAAGCAGTGATGGGAATGGAGAGGGGCTGGGCCGGAGGAGAAAAGGGGAGGGAGGAGAGAAACAAGAAAATGAGAGAAAAAAATCCACGAAGTAAACTAATTGTAAATGGCCAAACTCATTTGAAATTTTCCCACTCAACGTGTCACCTTATAAATTGTCCATCCATAGTGTCATGTTATTTTCTAAACTTCAAAGACTCAAACCAAATACTCAAATGCATTCAATTTAATCAGTTATATAATGAAACGAAGTAAGAGAAATATAGAATTTTTTAGTAATGATCGATAATGCTATTAAAGATGATTACGATTTAAATCTCCCACCTTCTAGCGGACCTTGAGAGTGGATCTCTCCGATCTATAATCGACGCTGAAGATCTGCCGTTGGCCGCCGCTGCAAACCTCGGCGCAAGCCGAGCCGGGGAATTACATCGTGAAGGTGAAGAAGCCACCAACCGACGTGCCTCATCCAGCCACTCATCCGTCAATTGCTCGTTTCTACTTCTATTACTCCGATCAAACCATTCTTCATCATCATCATCATCATCATCATCTTCATTTCCAGTCAAATTATAG

mRNA sequence

ATGCACGACCTCGCCTCCCTCCAGGCTCCACTCCTGCCCATCAGACCTTGCGACGGCGACGGCTTCGATGCTTTCACCAAATTTCGCGGCTCTGATTTCCGGGGATTAAATGATCAGGTCAGCAATTTCAGGGGATTGAAAAGTGGTGAGATTTTGAAATTTGGAGTAGGTGAAGACATGGCAGAAGTTATATATTGTGTGTATGCTAATAGAGGCGTTGACGGGGTTGTAGAAGCAGTGATGGGAATGGAGAGGGGCTGGGCCGGAGGAGAAAAGGGGAGGGAGGAGAGAAACAAGAAAATGAGAGAAAAAAATCCACGAAGTAAACTAATTACTCAAACCAAATACTCAAATGCATTCAATTTAATCAGTTATATAATGAAACGAACGGACCTTGAGAGTGGATCTCTCCGATCTATAATCGACGCTGAAGATCTGCCGTTGGCCGCCGCTGCAAACCTCGGCGCAAGCCGAGCCGGGGAATTACATCGTGAAGGTGAAGAAGCCACCAACCGACGTGCCTCATCCAGCCACTCATCCGTCAATTGCTCGTTTCTACTTCTATTACTCCGATCAAACCATTCTTCATCATCATCATCATCATCATCATCTTCATTTCCAGTCAAATTATAG

Coding sequence (CDS)

ATGCACGACCTCGCCTCCCTCCAGGCTCCACTCCTGCCCATCAGACCTTGCGACGGCGACGGCTTCGATGCTTTCACCAAATTTCGCGGCTCTGATTTCCGGGGATTAAATGATCAGGTCAGCAATTTCAGGGGATTGAAAAGTGGTGAGATTTTGAAATTTGGAGTAGGTGAAGACATGGCAGAAGTTATATATTGTGTGTATGCTAATAGAGGCGTTGACGGGGTTGTAGAAGCAGTGATGGGAATGGAGAGGGGCTGGGCCGGAGGAGAAAAGGGGAGGGAGGAGAGAAACAAGAAAATGAGAGAAAAAAATCCACGAAGTAAACTAATTACTCAAACCAAATACTCAAATGCATTCAATTTAATCAGTTATATAATGAAACGAACGGACCTTGAGAGTGGATCTCTCCGATCTATAATCGACGCTGAAGATCTGCCGTTGGCCGCCGCTGCAAACCTCGGCGCAAGCCGAGCCGGGGAATTACATCGTGAAGGTGAAGAAGCCACCAACCGACGTGCCTCATCCAGCCACTCATCCGTCAATTGCTCGTTTCTACTTCTATTACTCCGATCAAACCATTCTTCATCATCATCATCATCATCATCATCTTCATTTCCAGTCAAATTATAG

Protein sequence

MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDMAEVIYCVYANRGVDGVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAFNLISYIMKRTDLESGSLRSIIDAEDLPLAAAANLGASRAGELHREGEEATNRRASSSHSSVNCSFLLLLLRSNHSSSSSSSSSSSFPVKL*
Homology
[Close]
BLAST of CsGy1G008800.1 vs. NCBI nr
Match: KGN64349.1 (hypothetical protein Csa_013625 [Cucumis sativus])

HSP 1 Score: 241 bits (616), Expect = 7.94e-79
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60
           MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM
Sbjct: 1   MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60

Query: 61  AEVIYCVYANRGVDGVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF 120
           AEVIYCVYANRGVD VVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF
Sbjct: 61  AEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF 120

[Close]
BLAST of CsGy1G008800.1 vs. ExPASy TrEMBL
Match: A0A0A0LTM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G047420 PE=4 SV=1)

HSP 1 Score: 241 bits (616), Expect = 3.85e-79
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60
           MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM
Sbjct: 1   MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60

Query: 61  AEVIYCVYANRGVDGVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF 120
           AEVIYCVYANRGVD VVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF
Sbjct: 61  AEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF 120

The following BLAST results are available for this feature:
BLAST of CsGy1G008800.1 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy1G008800.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64349.17.94e-7999.17hypothetical protein Csa_013625 [Cucumis sativus][more]
BLAST of CsGy1G008800.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTM93.85e-7999.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G047420 PE=4 SV=1[more]
BLAST of CsGy1G008800.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy1G008800CsGy1G008800gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G008800.1.exon1CsGy1G008800.1.exon1exon
CsGy1G008800.1.exon2CsGy1G008800.1.exon2exon
CsGy1G008800.1.exon3CsGy1G008800.1.exon3exon
CsGy1G008800.1.exon4CsGy1G008800.1.exon4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.CsGy1G008800.1cds.CsGy1G008800.1CDS
cds.CsGy1G008800.1cds.CsGy1G008800.1_2CDS
cds.CsGy1G008800.1cds.CsGy1G008800.1_3CDS
cds.CsGy1G008800.1cds.CsGy1G008800.1_4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy1G008800.1CsGy1G008800.1-proteinpolypeptide