CsGy1G005365.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G005365.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	CLAVATA3/ESR (CLE)-related protein 45
Location	Gy14Chr1: 3559213 .. 3559680 (-)
Sequence length	468
RNA-Seq Expression	CsGy1G005365.1
Synteny	CsGy1G005365.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGCTCTGCATATATCTCAGACACATCCTTCTCCTCCCCATTCCCTCCTCATCGAACACAAATACTTTCATCCTTCTTCTGGTTTTAAGTACAAATGGGGTTCTTGATCCATAGGGTGACCATGCTACTTCTCTGTATTTGGTTTTTGGCTCTTCAACCAGAAGGAACCAATGGGTTGACAAACATTGATCTAGCACTCAGATGGGATAAAGCACACATTCCCATTTTCAATAGCTTCAAGTTTGTGAAGGATGTATCTGTTGAGGATGATTGGGGAAGAATGCTGGCTTTTGCTCCAGCACCTTCCACAGGTTTAGATCCAACCCAGTTGAACAAAAGAAGGGTTCGAAGAGGATCTGATCCTATCCACAACAAATGTTGAGAAGAAGAAATGAAGAAGATACAAAGACGTTTCGTACCCGTTTGTTTTCAAAGAAAAATAGAATGTTGGGAAGCCCTGTTGATG

mRNA sequence

TTTGGCTCTGCATATATCTCAGACACATCCTTCTCCTCCCCATTCCCTCCTCATCGAACACAAATACTTTCATCCTTCTTCTGGTTTTAAGTACAAATGGGGTTCTTGATCCATAGGGTGACCATGCTACTTCTCTGTATTTGGTTTTTGGCTCTTCAACCAGAAGGAACCAATGGGTTGACAAACATTGATCTAGCACTCAGATGGGATAAAGCACACATTCCCATTTTCAATAGCTTCAAGTTTGTGAAGGATGTATCTGTTGAGGATGATTGGGGAAGAATGCTGGCTTTTGCTCCAGCACCTTCCACAGGTTTAGATCCAACCCAGTTGAACAAAAGAAGGGTTCGAAGAGGATCTGATCCTATCCACAACAAATGTTGAGAAGAAGAAATGAAGAAGATACAAAGACGTTTCGTACCCGTTTGTTTTCAAAGAAAAATAGAATGTTGGGAAGCCCTGTTGATG

Coding sequence (CDS)

ATGGGGTTCTTGATCCATAGGGTGACCATGCTACTTCTCTGTATTTGGTTTTTGGCTCTTCAACCAGAAGGAACCAATGGGTTGACAAACATTGATCTAGCACTCAGATGGGATAAAGCACACATTCCCATTTTCAATAGCTTCAAGTTTGTGAAGGATGTATCTGTTGAGGATGATTGGGGAAGAATGCTGGCTTTTGCTCCAGCACCTTCCACAGGTTTAGATCCAACCCAGTTGAACAAAAGAAGGGTTCGAAGAGGATCTGATCCTATCCACAACAAATGTTGA

Protein sequence

MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDWGRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC*

Homology

[Close]

BLAST of CsGy1G005365.1 vs. NCBI nr
Match: KGN64003.1 (hypothetical protein Csa_013092 [Cucumis sativus])

HSP 1 Score: 204 bits (520), Expect = 1.53e-66
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60
          MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW
Sbjct: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60

Query: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95
          GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC
Sbjct: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95

[Close]

BLAST of CsGy1G005365.1 vs. NCBI nr
Match: KAA0036085.1 (CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYJ98893.1 CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (498), Expect = 3.49e-63
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60
          MGFLIHRV MLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIF+SFKFVKD SVEDDW
Sbjct: 1  MGFLIHRVAMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFSSFKFVKDASVEDDW 60

Query: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95
          G MLAFAPAPSTGLDPTQLNKRR+RRGSDPIHNKC
Sbjct: 61 GGMLAFAPAPSTGLDPTQLNKRRIRRGSDPIHNKC 95

[Close]

BLAST of CsGy1G005365.1 vs. NCBI nr
Match: KAG6584463.1 (hypothetical protein SDJN03_20395, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165 bits (418), Expect = 4.27e-51
Identity = 73/86 (84.88%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 10 MLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDWGRMLAFAPA 69
          MLLLC+WFL LQPEGT+GL+NIDLALRWDK  IPIFNSFKFVK+ SVEDDWGR LAFAPA
Sbjct: 1  MLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRTLAFAPA 60

Query: 70 PSTGLDPTQLNKRRVRRGSDPIHNKC 95
          P TG DPT+LNKRR+RRGSDPIHNKC
Sbjct: 61 PLTGFDPTRLNKRRIRRGSDPIHNKC 86

[Close]

BLAST of CsGy1G005365.1 vs. NCBI nr
Match: KAG6607448.1 (E3 ubiquitin-protein ligase MARCHF9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133 bits (334), Expect = 8.63e-35
Identity = 65/89 (73.03%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 7   RVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDWGRMLAF 66
           +V  LLLCI  LALQ +GTNGLTNI LALRWDK +IPI NSFK VKD     DW   LAF
Sbjct: 328 KVANLLLCIGILALQSQGTNGLTNIVLALRWDKLNIPISNSFKLVKD-----DWRGTLAF 387

Query: 67  APAPSTGLDPTQLNKRRVRRGSDPIHNKC 95
           APAPS G DPT+LNKRR+RRGSDPIHNKC
Sbjct: 388 APAPSMGFDPTRLNKRRIRRGSDPIHNKC 411

[Close]

BLAST of CsGy1G005365.1 vs. NCBI nr
Match: KAG7037105.1 (hypothetical protein SDJN02_00726, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117 bits (294), Expect = 3.46e-32
Identity = 55/73 (75.34%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 23 EGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDWGRMLAFAPAPSTGLDPTQLNKR 82
          +GTNGLTNI LALRWDK +IPI NSFK VKD     DW   LAFAPAPS G DPT+LNKR
Sbjct: 19 QGTNGLTNIVLALRWDKLNIPISNSFKLVKD-----DWRGTLAFAPAPSMGFDPTRLNKR 78

Query: 83 RVRRGSDPIHNKC 95
          R+RRGSDPIHNKC
Sbjct: 79 RIRRGSDPIHNKC 86

[Close]

BLAST of CsGy1G005365.1 vs. ExPASy TrEMBL
Match: A0A0A0LQI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033220 PE=4 SV=1)

HSP 1 Score: 204 bits (520), Expect = 7.42e-67
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60
          MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW
Sbjct: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60

Query: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95
          GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC
Sbjct: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95

[Close]

BLAST of CsGy1G005365.1 vs. ExPASy TrEMBL
Match: A0A5D3BHX9 (CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00900 PE=4 SV=1)

HSP 1 Score: 196 bits (498), Expect = 1.69e-63
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60
          MGFLIHRV MLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIF+SFKFVKD SVEDDW
Sbjct: 1  MGFLIHRVAMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFSSFKFVKDASVEDDW 60

Query: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95
          G MLAFAPAPSTGLDPTQLNKRR+RRGSDPIHNKC
Sbjct: 61 GGMLAFAPAPSTGLDPTQLNKRRIRRGSDPIHNKC 95

[Close]

BLAST of CsGy1G005365.1 vs. ExPASy TrEMBL
Match: M5WYZ5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 3.49e-31
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60
          MGFL +R  +L +CI FLALQPE  +GL ++DLALRWDK H+    S   VK V+VED  
Sbjct: 1  MGFLAYRSAVLFVCIGFLALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVKAVAVEDLQ 60

Query: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95
           + L+ APAPS   DP Q NKR+VR+GSDPIHN+C
Sbjct: 61 AK-LSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRC 94

[Close]

BLAST of CsGy1G005365.1 vs. ExPASy TrEMBL
Match: A0A314XM06 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_31163 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 3.49e-31
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60
          MGFL +R  +L +CI FLALQPE  +GL ++DLALRWDK H+    S   VK V+VED  
Sbjct: 1  MGFLAYRSAVLFVCIGFLALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVKAVAVEDLQ 60

Query: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95
           + L+ APAPS   DP Q NKR+VR+GSDPIHN+C
Sbjct: 61 AK-LSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRC 94

[Close]

BLAST of CsGy1G005365.1 vs. ExPASy TrEMBL
Match: A0A2P6P2N1 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 1.16e-29
Identity = 54/95 (56.84%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60
          MG L ++  +LL+CI FLALQPE  +GL ++DLALRWDK H    NS   VK V+VED  
Sbjct: 1  MGCLAYKGAILLVCIGFLALQPEKVSGLRSMDLALRWDKRHFSFLNSLHVVKAVAVEDLQ 60

Query: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95
           + L+ APAP+   DP+Q NKR VR+GSDPIHN+C
Sbjct: 61 AK-LSLAPAPAMTFDPSQSNKRTVRKGSDPIHNRC 94

The following BLAST results are available for this feature:

BLAST of CsGy1G005365.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G005365.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64003.1	1.53e-66	100.00	hypothetical protein Csa_013092 [Cucumis sativus]	[more]
KAA0036085.1	3.49e-63	94.74	CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYJ98893.1 CLA...	[more]
KAG6584463.1	4.27e-51	84.88	hypothetical protein SDJN03_20395, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6607448.1	8.63e-35	73.03	E3 ubiquitin-protein ligase MARCHF9, partial [Cucurbita argyrosperma subsp. soro...	[more]
KAG7037105.1	3.46e-32	75.34	hypothetical protein SDJN02_00726, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsGy1G005365.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQI0	7.42e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033220 PE=4 SV=1	[more]
A0A5D3BHX9	1.69e-63	94.74	CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
M5WYZ5	3.49e-31	57.89	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1	[more]
A0A314XM06	3.49e-31	57.89	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_311...	[more]
A0A2P6P2N1	1.16e-29	56.84	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4...	[more]

BLAST of CsGy1G005365.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..95
None	No IPR available	PANTHER	PTHR36726:SF5	CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE11	coord: 1..95

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G005365	CsGy1G005365	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G005365.1.exon1	CsGy1G005365.1.exon1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G005365.1.utr3p1	CsGy1G005365.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy1G005365.1	cds.CsGy1G005365.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G005365.1.utr5p1	CsGy1G005365.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G005365.1	CsGy1G005365.1-protein	polypeptide