Cp4.1LG18g03640.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g03640.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L31
Location	Cp4.1LG18: 5090916 .. 5092562 (+)
Sequence length	773
RNA-Seq Expression	Cp4.1LG18g03640.1
Synteny	Cp4.1LG18g03640.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGATAACACGTTGATAAATCGGTACGATGCCGAAATTAGGGTTTTGAGTACCATTTTTATTGTACCCTTTCATCTTCACTTCTCGCCTGCTGCATCGCTTCAACCCTCGCACAAGGTCTCTCTCGATCTGCCATCTCTAGATTGTCTGAAGTTTCGATTTCTTTTCTCGAACGGATTGAAATTGATTTCATCTGACATTGTTTGATTGCAGGTAAAATCGAAGAAGCCGACTGCAGATATGGTTGAGAAAACGAAGGGGAGGAAGGAAGAGGTGGTCTCAAGAGAGTACACCATCAATCTACACAAGCGTTTACATGGCTGGTACAAACTCGTTCATAATTTTTCCTTCTGGTTTCGATTCCGTTTGATTGCGTATTTTATCTCATTCATCGATATTAACTGATGCCTTCTCCCGCTCAATTAATTTATTAAGCTACTGTTTGATGTTCGTCCAATATCTATGGCTAGAGATTTTCAATTTCTTATGCTTTGAAACTAATTTCTTCGTTATGAGACCTTTTTTTTTTTTGTTTCTCGTGAATTAAATTGTAAGATTACATGGCGTGGTAAGTTAAAGGTTTATTTGTATACATATATCAAGACTATGTTGATTGTGAAGCTTGTATAAGATAAGAGTTAGGGGATAAAGGACAAATTTCATCGTGGAATTTCATTAAGAACACGTATCAGCTGATCTAAGAAATGTAGAATGCACTGGTAGTATAATGTCTGTTTTGGGTATTGAAGATGTAGACGAGATTAATAAGAATAATGAAAGCAAGGTTTTGGAGAATTTTTATGCAAGTTTATAAGACAGAAGGTCAATGGAACTACTAAGAAGATGAAATATGGGAAGTTTGTTATGCAGTGTGAAATATTGGACTAGCGGTCTGGTGGATGGTTTATGTGCTGTTTCTTCTGTGTTTCTACGCAACTTTTCATTTGTAATTTGTAGTCTAGTATTTTTGTGTTTATATGTTTTTTTGTTTCCCCCTTCATTCTAATTCCAATCGTTTTCCCCTTTCGCATCCAATTTGAATCCCGAATTCGTCTACAACAACTATATAGTTCTCATGCTTACTGAAACTTTAAATGACAGCACCTTCAAGAAGAAGGCTCCTAAGGCCATCAAGGAGATAAGGAAGTTTGCAGAGAAAGCAATGGGAACGAAGGACGTCAGGGTGGATGTGAAACTGAACAAGCATATCTGGAGCAGAGGAATTCGAAGTGTTCCAAGGAGAATTAGGGTTCGTATTGCACGCAAGAGGAACGATGATGAAGATGCAAAGGAAGAACTGTATTCGCTTGTTACCGTTGCAGAAATCCCAGCAGAAGGTTTGAAAGGATTGGGTACTAAGGTCATCGATGAAGAAGATTGATTTCACATACCCATTTGCCTCTTTATCAGTTATTTCCTTTTGGCAACATTTTTGGTAAAAGACTTGAGTTCTTCATTGTCCCATCCTTCGGTACATTTCTTTATTTTACTTCGAATCCTAGCGGAATCAGCTTTTTTTTTTTCTTTTCTTTTTATAATTTATAGTTGTGCTTGCAATGGTTATCGTTGTAGTATCAATTTTACCTTTCACTATTGAACTTGCTTCTCTTTTAAGGACGAACTGTGATAGTAAATCATTATAAA

mRNA sequence

ATGGTGGATAACACGTTGATAAATCGGTACGATGCCGAAATTAGGGTTTTGAGTACCATTTTTATTGTACCCTTTCATCTTCACTTCTCGCCTGCTGCATCGCTTCAACCCTCGCACAAGGTAAAATCGAAGAAGCCGACTGCAGATATGGTTGAGAAAACGAAGGGGAGGAAGGAAGAGGTGGTCTCAAGAGAGTACACCATCAATCTACACAAGCGTTTACATGGCTGCACCTTCAAGAAGAAGGCTCCTAAGGCCATCAAGGAGATAAGGAAGTTTGCAGAGAAAGCAATGGGAACGAAGGACGTCAGGGTGGATGTGAAACTGAACAAGCATATCTGGAGCAGAGGAATTCGAAGTGTTCCAAGGAGAATTAGGGTTCGTATTGCACGCAAGAGGAACGATGATGAAGATGCAAAGGAAGAACTGTATTCGCTTGTTACCGTTGCAGAAATCCCAGCAGAAGGTTTGAAAGGATTGGGTACTAAGGTCATCGATGAAGAAGATTGATTTCACATACCCATTTGCCTCTTTATCAGTTATTTCCTTTTGGCAACATTTTTGGTAAAAGACTTGAGTTCTTCATTGTCCCATCCTTCGGTACATTTCTTTATTTTACTTCGAATCCTAGCGGAATCAGCTTTTTTTTTTTCTTTTCTTTTTATAATTTATAGTTGTGCTTGCAATGGTTATCGTTGTAGTATCAATTTTACCTTTCACTATTGAACTTGCTTCTCTTTTAAGGACGAACTGTGATAGTAAATCATTATAAA

Coding sequence (CDS)

ATGGTGGATAACACGTTGATAAATCGGTACGATGCCGAAATTAGGGTTTTGAGTACCATTTTTATTGTACCCTTTCATCTTCACTTCTCGCCTGCTGCATCGCTTCAACCCTCGCACAAGGTAAAATCGAAGAAGCCGACTGCAGATATGGTTGAGAAAACGAAGGGGAGGAAGGAAGAGGTGGTCTCAAGAGAGTACACCATCAATCTACACAAGCGTTTACATGGCTGCACCTTCAAGAAGAAGGCTCCTAAGGCCATCAAGGAGATAAGGAAGTTTGCAGAGAAAGCAATGGGAACGAAGGACGTCAGGGTGGATGTGAAACTGAACAAGCATATCTGGAGCAGAGGAATTCGAAGTGTTCCAAGGAGAATTAGGGTTCGTATTGCACGCAAGAGGAACGATGATGAAGATGCAAAGGAAGAACTGTATTCGCTTGTTACCGTTGCAGAAATCCCAGCAGAAGGTTTGAAAGGATTGGGTACTAAGGTCATCGATGAAGAAGATTGA

Protein sequence

MVDNTLINRYDAEIRVLSTIFIVPFHLHFSPAASLQPSHKVKSKKPTADMVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED

Homology

[Close]

BLAST of Cp4.1LG18g03640.1 vs. ExPASy Swiss-Prot
Match: P46290 (60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.0e-55
Identity = 108/120 (90.00%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 50  MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 109
           M +KTKGRKEEVV+REYTINLHKRLH CTFKKKAP AIKEIRKFA+KAMGTKDVRVDVKL
Sbjct: 1   MSDKTKGRKEEVVTREYTINLHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVKL 60

Query: 110 NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 169
           NK IWSRGIRSVPRR+RVRIARKRNDDEDAKEELYSLVTVAEIPA+GLKGLGTK+I++ED
Sbjct: 61  NKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKIIEDED 120

[Close]

BLAST of Cp4.1LG18g03640.1 vs. ExPASy Swiss-Prot
Match: Q9MAV7 (60S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.5e-54
Identity = 107/120 (89.17%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 50  MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 109
           MVEKTKGRKEEVV+REYTINLHKRLHGCTFKKKAP AIKEIRKFA+KAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVKL 60

Query: 110 NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 169
           NK IWSRGIRSVPRR+RVRIARKRNDDEDAKEELYSLVTVA+IPA  LKGLG ++I+E+D
Sbjct: 61  NKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKIPAGTLKGLGPQIIEEDD 120

[Close]

BLAST of Cp4.1LG18g03640.1 vs. ExPASy Swiss-Prot
Match: Q9M573 (60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 7.6e-54
Identity = 108/116 (93.10%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 54  TKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKHI 113
           +K RKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFA+KAMGT DVRVDVKLNKHI
Sbjct: 6   SKPRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKHI 65

Query: 114 WSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 170
           WSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIP  GLKGLGT+VIDEE+
Sbjct: 66  WSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVIDEEE 121

[Close]

BLAST of Cp4.1LG18g03640.1 vs. ExPASy Swiss-Prot
Match: P51420 (60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2)

HSP 1 Score: 204.5 bits (519), Expect = 9.3e-52
Identity = 102/119 (85.71%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 51  VEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 110
           + + KGRKEEV++REYTINLH+RLH CTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN
Sbjct: 1   MSEKKGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 60

Query: 111 KHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 170
           K IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEIPAEGL GLGTKVI+EED
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119

[Close]

BLAST of Cp4.1LG18g03640.1 vs. ExPASy Swiss-Prot
Match: Q9STR1 (60S ribosomal protein L31-2 OS=Arabidopsis thaliana OX=3702 GN=RPL31B PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.1e-51
Identity = 101/119 (84.87%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 51  VEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 110
           + + KGRKEEVV+REYTINLH+RLH CTFKKKAPKAIKEIRKFAEK MGTKDVRVDVKLN
Sbjct: 1   MSEKKGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLN 60

Query: 111 KHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 170
           K IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEIPAEGL GLGTK+I+EED
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119

[Close]

BLAST of Cp4.1LG18g03640.1 vs. NCBI nr
Match: KAG6589975.1 (60S ribosomal protein L31, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246 bits (627), Expect = 7.18e-80
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 40  KVKSKKPTADMVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMG 99
           KVKSKKPTADMVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMG
Sbjct: 84  KVKSKKPTADMVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMG 143

Query: 100 TKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKG 159
           TKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKG
Sbjct: 144 TKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKG 203

Query: 160 LGTKVIDEED 169
           LGTKVIDEED
Sbjct: 204 LGTKVIDEED 213

[Close]

BLAST of Cp4.1LG18g03640.1 vs. NCBI nr
Match: XP_008450816.1 (PREDICTED: 60S ribosomal protein L31 [Cucumis melo] >XP_022928007.1 60S ribosomal protein L31 [Cucurbita moschata] >XP_022928011.1 60S ribosomal protein L31 [Cucurbita moschata] >XP_022928015.1 60S ribosomal protein L31 [Cucurbita moschata] >XP_022960857.1 60S ribosomal protein L31 [Cucurbita moschata] >XP_023516766.1 60S ribosomal protein L31 [Cucurbita pepo subsp. pepo] >XP_023516767.1 60S ribosomal protein L31 [Cucurbita pepo subsp. pepo] >KAG6588019.1 60S ribosomal protein L31, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021916.1 60S ribosomal protein L31 [Cucurbita argyrosperma subsp. argyrosperma] >TYK10122.1 60S ribosomal protein L31 [Cucumis melo var. makuwa] >KAG7023639.1 60S ribosomal protein L31, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228 bits (581), Expect = 3.27e-74
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 50  MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 109
           MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60

Query: 110 NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 169
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120

[Close]

BLAST of Cp4.1LG18g03640.1 vs. NCBI nr
Match: XP_022987909.1 (60S ribosomal protein L31-like [Cucurbita maxima])

HSP 1 Score: 227 bits (578), Expect = 9.36e-74
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 50  MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 109
           MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60

Query: 110 NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 169
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTV+EIPAEGLKGLGTKVIDEED
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVSEIPAEGLKGLGTKVIDEED 120

[Close]

BLAST of Cp4.1LG18g03640.1 vs. NCBI nr
Match: XP_038878471.1 (60S ribosomal protein L31 [Benincasa hispida] >XP_038878472.1 60S ribosomal protein L31 [Benincasa hispida])

HSP 1 Score: 227 bits (578), Expect = 9.36e-74
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 50  MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 109
           MVEKTKGRKEEVV+REYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60

Query: 110 NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 169
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120

[Close]

BLAST of Cp4.1LG18g03640.1 vs. NCBI nr
Match: XP_022145069.1 (60S ribosomal protein L31 [Momordica charantia] >XP_022145070.1 60S ribosomal protein L31 [Momordica charantia] >XP_022145071.1 60S ribosomal protein L31 [Momordica charantia])

HSP 1 Score: 226 bits (576), Expect = 1.89e-73
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 50  MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 109
           MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAP AIKEIRKFAEKAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPNAIKEIRKFAEKAMGTKDVRVDVKL 60

Query: 110 NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 169
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120

[Close]

BLAST of Cp4.1LG18g03640.1 vs. ExPASy TrEMBL
Match: A0A6J1EIQ4 (60S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111434907 PE=3 SV=1)

HSP 1 Score: 228 bits (581), Expect = 1.58e-74
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 50  MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 109
           MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60

Query: 110 NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 169
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120

[Close]

BLAST of Cp4.1LG18g03640.1 vs. ExPASy TrEMBL
Match: A0A5D3CFU7 (60S ribosomal protein L31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002650 PE=3 SV=1)

HSP 1 Score: 228 bits (581), Expect = 1.58e-74
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 50  MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 109
           MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60

Query: 110 NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 169
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120

[Close]

BLAST of Cp4.1LG18g03640.1 vs. ExPASy TrEMBL
Match: A0A1S3BR53 (60S ribosomal protein L31 OS=Cucumis melo OX=3656 GN=LOC103492289 PE=3 SV=1)

HSP 1 Score: 228 bits (581), Expect = 1.58e-74
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 50  MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 109
           MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60

Query: 110 NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 169
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120

[Close]

BLAST of Cp4.1LG18g03640.1 vs. ExPASy TrEMBL
Match: A0A6J1JK56 (60S ribosomal protein L31-like OS=Cucurbita maxima OX=3661 GN=LOC111485311 PE=3 SV=1)

HSP 1 Score: 227 bits (578), Expect = 4.53e-74
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 50  MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 109
           MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60

Query: 110 NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 169
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTV+EIPAEGLKGLGTKVIDEED
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVSEIPAEGLKGLGTKVIDEED 120

[Close]

BLAST of Cp4.1LG18g03640.1 vs. ExPASy TrEMBL
Match: A0A6J1CV98 (60S ribosomal protein L31 OS=Momordica charantia OX=3673 GN=LOC111014586 PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 9.15e-74
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 50  MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 109
           MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAP AIKEIRKFAEKAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPNAIKEIRKFAEKAMGTKDVRVDVKL 60

Query: 110 NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 169
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120

[Close]

BLAST of Cp4.1LG18g03640.1 vs. TAIR 10
Match: AT5G56710.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 204.5 bits (519), Expect = 6.6e-53
Identity = 102/119 (85.71%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 51  VEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 110
           + + KGRKEEV++REYTINLH+RLH CTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN
Sbjct: 1   MSEKKGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 60

Query: 111 KHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 170
           K IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEIPAEGL GLGTKVI+EED
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119

[Close]

BLAST of Cp4.1LG18g03640.1 vs. TAIR 10
Match: AT4G26230.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 203.4 bits (516), Expect = 1.5e-52
Identity = 101/119 (84.87%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 51  VEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 110
           + + KGRKEEVV+REYTINLH+RLH CTFKKKAPKAIKEIRKFAEK MGTKDVRVDVKLN
Sbjct: 1   MSEKKGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLN 60

Query: 111 KHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 170
           K IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEIPAEGL GLGTK+I+EED
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119

[Close]

BLAST of Cp4.1LG18g03640.1 vs. TAIR 10
Match: AT2G19740.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 202.2 bits (513), Expect = 3.3e-52
Identity = 102/119 (85.71%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 51  VEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 110
           +EK KGRKEEVV+REYTINLH+RLH CTFKKKAP AIKEIRKFA KAMGTKDVRVDVKLN
Sbjct: 1   MEKGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLN 60

Query: 111 KHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 170
           K IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEIPAEGL GLGTKVI+EE+
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119

[Close]

BLAST of Cp4.1LG18g03640.1 vs. TAIR 10
Match: AT5G56710.2 (Ribosomal protein L31e family protein )

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-30
Identity = 73/119 (61.34%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 51  VEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 110
           + + KGRKEEV++REYTINLH+RLH CTFKKKAPKAIKEIRKFAEKAMGTKDVRVD    
Sbjct: 1   MSEKKGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVD---- 60

Query: 111 KHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 170
                                         EE +SLVTVAEIPAEGL GLGTKVI+EED
Sbjct: 61  ------------------------------EEFFSLVTVAEIPAEGLSGLGTKVIEEED 85

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g03640.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46290	4.0e-55	90.00	60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1	[more]
Q9MAV7	4.5e-54	89.17	60S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1	[more]
Q9M573	7.6e-54	93.10	60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1	[more]
P51420	9.3e-52	85.71	60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2	[more]
Q9STR1	2.1e-51	84.87	60S ribosomal protein L31-2 OS=Arabidopsis thaliana OX=3702 GN=RPL31B PE=3 SV=1	[more]

BLAST of Cp4.1LG18g03640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589975.1	7.18e-80	100.00	60S ribosomal protein L31, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008450816.1	3.27e-74	100.00	PREDICTED: 60S ribosomal protein L31 [Cucumis melo] >XP_022928007.1 60S ribosoma...	[more]
XP_022987909.1	9.36e-74	99.17	60S ribosomal protein L31-like [Cucurbita maxima]	[more]
XP_038878471.1	9.36e-74	99.17	60S ribosomal protein L31 [Benincasa hispida] >XP_038878472.1 60S ribosomal prot...	[more]
XP_022145069.1	1.89e-73	99.17	60S ribosomal protein L31 [Momordica charantia] >XP_022145070.1 60S ribosomal pr...	[more]

BLAST of Cp4.1LG18g03640.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EIQ4	1.58e-74	100.00	60S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111434907 PE=3 SV=...	[more]
A0A5D3CFU7	1.58e-74	100.00	60S ribosomal protein L31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BR53	1.58e-74	100.00	60S ribosomal protein L31 OS=Cucumis melo OX=3656 GN=LOC103492289 PE=3 SV=1	[more]
A0A6J1JK56	4.53e-74	99.17	60S ribosomal protein L31-like OS=Cucurbita maxima OX=3661 GN=LOC111485311 PE=3 ...	[more]
A0A6J1CV98	9.15e-74	99.17	60S ribosomal protein L31 OS=Momordica charantia OX=3673 GN=LOC111014586 PE=3 SV...	[more]

BLAST of Cp4.1LG18g03640.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56710.1	6.6e-53	85.71	Ribosomal protein L31e family protein	[more]
AT4G26230.1	1.5e-52	84.87	Ribosomal protein L31e family protein	[more]
AT2G19740.1	3.3e-52	85.71	Ribosomal protein L31e family protein	[more]
AT5G56710.2	2.1e-30	61.34	Ribosomal protein L31e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000054	Ribosomal protein L31e	SMART	SM01380	Ribosomal_L31e_2	coord: 59..142 e-value: 1.4E-49 score: 180.7
IPR000054	Ribosomal protein L31e	PFAM	PF01198	Ribosomal_L31e	coord: 60..141 e-value: 4.6E-42 score: 142.1
IPR000054	Ribosomal protein L31e	PANTHER	PTHR10956	60S RIBOSOMAL PROTEIN L31	coord: 50..169
IPR000054	Ribosomal protein L31e	CDD	cd00463	Ribosomal_L31e	coord: 58..141 e-value: 5.4812E-35 score: 115.744
IPR023621	Ribosomal protein L31e domain superfamily	GENE3D	3.10.440.10		coord: 58..169 e-value: 6.1E-49 score: 166.6
IPR023621	Ribosomal protein L31e domain superfamily	SUPERFAMILY	54575	Ribosomal protein L31e	coord: 60..141
None	No IPR available	PANTHER	PTHR10956:SF33	60S RIBOSOMAL PROTEIN L31-2-RELATED	coord: 50..169
IPR020052	Ribosomal protein L31e, conserved site	PROSITE	PS01144	RIBOSOMAL_L31E	coord: 103..117

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG18g03640	Cp4.1LG18g03640	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g03640.1:exon:001	Cp4.1LG18g03640.1:exon:001	exon
Cp4.1LG18g03640.1:exon:002	Cp4.1LG18g03640.1:exon:002	exon
Cp4.1LG18g03640.1:exon:003	Cp4.1LG18g03640.1:exon:003	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g03640.1:cds:001	Cp4.1LG18g03640.1:cds:001	CDS
Cp4.1LG18g03640.1:cds:002	Cp4.1LG18g03640.1:cds:002	CDS
Cp4.1LG18g03640.1:cds:003	Cp4.1LG18g03640.1:cds:003	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g03640.1:three_prime_utr:001	Cp4.1LG18g03640.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g03640.1	Cp4.1LG18g03640.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome