Cp4.1LG18g00430.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g00430.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG18: 895931 .. 898598 (-)
Sequence length	989
RNA-Seq Expression	Cp4.1LG18g00430.1
Synteny	Cp4.1LG18g00430.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTCGAGTCGGTGATTGCGCAAAATCAAGCAAATCAAAAAAACCTCAACTATCAAATCCACAAATGCCCAAACTAAAAGTTGGGTATGAACCCCATGACGCCATCCCGTCCCTTTCCTTAGCGGCTAGCCCTTTGGTCCTTTTCGAAACCATAATCTCCCACTCTCTCCAATGGCGTCCTCGTCTTCGTTGGCAACATCCTACTCTTCCGACTCATCGTCTTCTTCTTTCTCGTGTTCGCCATCGCCGGGGAATTCGCCGTCAAAAAGATCGGGCCACGCTTAGGATTCGCAAGAAATCTCGCTCTCATTCTAAACGCCGTCGCAGGCACCGCCGCTCCTCCTCCGACTCTCTCTCTTCATCTGACTCCGATTCCATTACTCCCGGTAACCTGAACATGTAAATTTTTTCTCTTAGTATGCTTTTCCTCTGTGGTTTCTGATCTTTTTATTATGTTCTTTTTACCTTGGTTGTTGTTTGGTTGCTATTGATTAGAGTTTGAAGCAAACTGCGAGTTTTATGCGATAGTTGATACTCTTTTCTAATCTGTTCTTTTTTTGTCATTCTGGAGGTCTTGTGATTTATGTGCTCTTAGTTATGATTAGGTTGCCAATCAGAATTGCTTGGCATGAGAACTTCAACTCCTGGTTATGAATTTGAAATTTATGGCATTTTCTGTTTAGGAAGCGAAGAATTTATGGCATCTTCTGTTATATTTAAACTTTGGGCAAATAGTCTCCATTTTTGAGTTTGGTGTCTATTTGATCCGGTGATTTGAAAGATTGTTCCAAATGATTTGTTCTAAATGGTTGTAAACCAATTTGACTGACGTTTGCTGACAAACAATTGATGTGGTGGTTAAATGGATGGATGTATGTTGTTGTGCTGGCTAAGTATGATTCTTTTATTGAGTGTCTTCATTCTGCTTTTCTCTGGCCTGCTCATTGTCACAATCGCACTTTTAATGGTAGCGGACTTGCGATTGTGCGGCACTCACTTTCCAACGACAAGTGAGCTAAGCCAATTCGTTCTTGCGTCGCCTACGGCCAAGCGACGTATGCTCGAGCCTCTAGCCTCGGTTTTAAGAGAAAGTTTTAGAAAGCGAGGGCAGAGAGAGATTTTTGAAAGAGACGTTATATAAGCAAGCAAGAGAGAAGTTGACAACGGCTTACAATATATAACCTTGGGTAGGGAGAAGTTGAAAAGACATAAAGGGTTGGGCTTGTCATGGGCATGCGGCCATGGGCAACACGCCTTGGACGAGCATGACCGTGACACTCATCATCGGTGTCAGAATCGTCGGCACTTTCTTCTCAAGCTATGGTCTTCCACTTTCTTCTCAAGCTATGGTCTTCCACTTTCTCCTTCCTAAGTTCCAACTCCCTTTGACGCGGTACTCTGATCACCAATGATCCAATTGCACTGTCAACCATTGGCTCGTCGGAATTGTTGACCAGAAAATTTCCCCCCTCTTCCAAACCAGTCGACAGTGTCTCCTCCTCTGATCTTACCATCAATTTGTTCTGCAGCCCTTGGGATTGAATCTTTAACCCATCAACGGAGAGACTTTGTAATCTTCAATCTCTGGTGGCTATTTTCTATTACCGCAGCAGCTGTTATCCCCATTCAATTCTCTCCCACATGGGGCGGTGAATGTGTTATAATCCAATCTGGACAGATGCCTAGTTTGGTCTGTTTTTAAACGAGGTTCATTTGTTCCAAATCAGAACGAGGAACAACTTCGTTCATTCATTCTAGATCTGGAACGAGGGGCGTCCCTTGTCTTAGATAGCCTTGTTTACTATGAAGCGTTCCAGATCATTAATTCCTCATTCAAGTGGTTTGTTCCATTTTGATTGCTTTGGAAGTAGCAGCAATAAGAGAGTTTGCAGATAGGAGAAGGAAAAAGGGAGAGAGGTCGGAAGAAGACGTGCTTCATATTTTCTGGGATTCTTAATTTATACTTTTCAAGATCATGTCTGAGTGAGTGGTGTTGCTTATTTTCCAGTCAATTATTTTTGCACAGCACCTGCCTTGTACCCAAGATAATTCTTACTAGCCCTTGTATATACTTGCAGAAGCAATAGCTCTTCTCAAAGTGAGCTTGAAGAGTTTGGCCGTTCAAAGCGGCATAAGAAGAATGGTAGAACGAAAACGGTAGATGTTTTTACACAACATTTCTTTTCCTATTTGGCTTTGTAGTTTCACTTGTGGATTTCTCCTTGTTATTGTTACTATTTGTGCATCGATAAGAAGAGGGAGCGAAGTTAGAAACATCACCATGAAAGGCGTAAGCATAAGGCTAAAGAGGTAGACCACTATTGTACTTGTGTACTATTTTTCCCTTTGTTGCTGATAATGTTGTAATTTCGATGAATTGAGAAATGCCATGGAAATAACCTCTATGTATGTTAGATTTATGGATACATGAATTTGTGGGATGCATGTACATGTGAGATCCATGTACTTAGTTAATAATTGAAGAGTCATGAGAGTCAGATTCATTTGGTTGATACATGTATTAGATTATTCATGTATCACCATAATGATAATACATGTATTATATAGACTTGTTATTTAATATTTGGTACATGTATGACTATGGAGGATATTTCAAAAGGCTTGACAACTTTAAAATAGAATACATCTCTTCCTCATAATTGTCCA

mRNA sequence

CATTTCGAGTCGGTGATTGCGCAAAATCAAGCAAATCAAAAAAACCTCAACTATCAAATCCACAAATGCCCAAACTAAAAGTTGGGTATGAACCCCATGACGCCATCCCGTCCCTTTCCTTAGCGGCTAGCCCTTTGGTCCTTTTCGAAACCATAATCTCCCACTCTCTCCAATGGCGTCCTCGTCTTCGTTGGCAACATCCTACTCTTCCGACTCATCGTCTTCTTCTTTCTCGTGTTCGCCATCGCCGGGGAATTCGCCGTCAAAAAGATCGGGCCACGCTTAGGATTCGCAAGAAATCTCGCTCTCATTCTAAACGCCGTCGCAGGCACCGCCGCTCCTCCTCCGACTCTCTCTCTTCATCTGACTCCGATTCCATTACTCCCGGTAACCTGAACATAAGCAATAGCTCTTCTCAAAGTGAGCTTGAAGAGTTTGGCCGTTCAAAGCGGCATAAGAAGAATGGTAGAACGAAAACGGTAGATGTTTTTACACAACATTTCTTTTCCTATTTGGCTTTGTAGTTTCACTTGTGGATTTCTCCTTGTTATTGTTACTATTTGTGCATCGATAAGAAGAGGGAGCGAAGTTAGAAACATCACCATGAAAGGCGTAAGCATAAGGCTAAAGAGGTAGACCACTATTGTACTTGTGTACTATTTTTCCCTTTGTTGCTGATAATGTTGTAATTTCGATGAATTGAGAAATGCCATGGAAATAACCTCTATGTATGTTAGATTTATGGATACATGAATTTGTGGGATGCATGTACATGTGAGATCCATGTACTTAGTTAATAATTGAAGAGTCATGAGAGTCAGATTCATTTGGTTGATACATGTATTAGATTATTCATGTATCACCATAATGATAATACATGTATTATATAGACTTGTTATTTAATATTTGGTACATGTATGACTATGGAGGATATTTCAAAAGGCTTGACAACTTTAAAATAGAATACATCTCTTCCTCATAATTGTCCA

Coding sequence (CDS)

ATGGCGTCCTCGTCTTCGTTGGCAACATCCTACTCTTCCGACTCATCGTCTTCTTCTTTCTCGTGTTCGCCATCGCCGGGGAATTCGCCGTCAAAAAGATCGGGCCACGCTTAG

Protein sequence

MASSSSLATSYSSDSSSSSFSCSPSPGNSPSKRSGHA

Homology

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g00430.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG18g00430.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG18g00430.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG18g00430.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG18g00430	Cp4.1LG18g00430	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g00430.1:exon:002	Cp4.1LG18g00430.1:exon:002	exon
Cp4.1LG18g00430.1:exon:001	Cp4.1LG18g00430.1:exon:001	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g00430.1:three_prime_utr:001	Cp4.1LG18g00430.1:three_prime_utr:001	three_prime_UTR
Cp4.1LG18g00430.1:three_prime_utr:002	Cp4.1LG18g00430.1:three_prime_utr:002	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g00430.1:cds:001	Cp4.1LG18g00430.1:cds:001	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g00430.1:five_prime_utr:001	Cp4.1LG18g00430.1:five_prime_utr:001	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g00430.1	Cp4.1LG18g00430.1-protein	polypeptide