Cp4.1LG17g10700.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG17g10700.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG17: 8044235 .. 8051098 (-)
Sequence length1723
RNA-Seq ExpressionCp4.1LG17g10700.1
SyntenyCp4.1LG17g10700.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTAATGCCGAAGGCTGGCCGCCCTCTGTTAGAAGATTCTTTTGTTTTCAGTCCATGGTTTGATTCCTGCAAAAGAAGAGCAAGGAAATCACGCCTTTACTTGATTCTAGTTTTTCATAATGCTGATCGATATGGTTTTTGTTTTTTCGATTACTGACTTTCTTTCTAGGCACCGGCAGTTTTCTGATTACAGTTCATCTCTAAAGCGTATTCACCTTTGAAGCTAGGTTTGGTAACCAAGACTGAATATCCTTTTTTGGTTTCTGAAGTTTTGTTTATGTTCTAGATGTTTTAGACATTCTATTTTAACAAACTGGTGACGTTTGATTATGTTCTGTGAGATTTTGGAACTGTGTTAGAGAGATAGTGAGATTGTTGGTGTATTCTCGCTTGGTTGCAACTCCTCTGGATACCTTTGTTGACTTAGGAGTTAGAATTGCAAAATTGACTGATTTAATTGTTGCTATCGATGCGTTACATTTTGATGTAGGCAATTTCATTTTCTCATATTTTGGTTCATAGATTTGTTGTTCGTTCCATCAAAAGAGGTTTATTAGGCCTTGAATTCATATCAGTTGCCAGTGTAGTTTTCTGTTTTTCCATCAGGCGAACCTGTTTGGGCTATTTCTATTGGTGATCACAACTGAGTCATTGATCCCATGAAGTACTACTACTAGAAGGGTATTCAAAGTAAGAGAAACTTCCATGGTATTTCTAGGCAGGCTCTTGTTTGAACAAATTTCAAATGATATGAGAGTGAAGTATTTTATCTAAATTCAATATGCTCGTTGGAATATTATTTCTGTCATGGTACTTCTATGCTTATTTTGTTTTAGTCCGTAAGCTTTCAAAGATTACTTTAGCCCCTTAAGCTTTATACAAAAATTTCAATCATCAATGAAATTGTCTCTTTTATATATATAAAAAAAATCTTTATACAAAAATTATCTGAGTCCTTTCTGTTCATTTTCTTTTTGGTTGCACTCTTAATTTAATAGAAGATTTTGGTCCATTCTTCTCCTTTTTGTCCATACTTATCCTAGGATTCTTATCATTATAAAAATTTGCAGGATGACGATTTATGATGGTTTCGTTGGCTATGGTAAATCTAAATGTCAGAAAAGTTTCTTTTCAGGACTACCGGTGCTCTTTTTTCATGTCAGGTAAATAGAGTTGGAAAACTGTCTATATTTTAGTTTAGCCTAAGAGGGCTGTCAAAGGTGAAAGAAAAAGAAAACAAGAATAATCAACTGCGAGTAGAACGTGCTTTTTCGTGGAATATGCAAGACAATATAATCATAAAGTGTTCTAGGGATAACAATACATTTCACACACAACATACAAAGTGAGCATTTGAAGAGGGGGATCCTCTGCTTATTTTCACACCCAAACACTGTTCAGATAGTAGTAACTTGCACTCTATCAGCAATAATTACCAATAATGGGTAGACAGTACCAACGCACTTGGATACTGATGAACAAGGAATATACTTCTTCTACCTCTCAAAGCTCCAGCACAAGATCTACGATGAACACAATAAAAGTGAATTAGAGTTGCTTCAAGAGTCAGTGTTGTCACACTTGTCTCTCATGTAATTGGTTAAATAATGTAGCGAGCAGTCGATGGTATAGCAGATATACAGAAAAGGATTAGCTACCATTCATCCTGTGTTTTGTGGAAGGTGAGCATAAATACCAAACCAAGACTACAGTGAGTTGGTTTTCGTTTTATAATTTAAGAGTATTAACTTGTAGGTTGTGGGTGTCGATATTAGTGTTTATGGAAACTAATAGGATATCTAGGTGAATGTTGGAAGCTAGGAAATATTGAGTTTAGTAACTTACAGTCTTCATCTGAATTAATCCAGCGTTCCTTGTTGTCATTTGGATCAGAACTGTGTAGTTCATGTGGTGGAAATTGATTCTTGATACGTCGAAAGCTTGGTTTCGACAGTGTTCTCTGAGGATATATCATGATATCCTCATCAGATGTCTGCTCTCCATTGTTGTAGCAACCATCATGGTTATGGTTTGGTTTCTTCTTTCTTTGAAACTTTTGGTGCTTATCGGTCTTTTGTATGATTGTTGAGCTTTCAGGGTGAACTTTTCTGTGGAACATGTGAAAGATCTGCAAGCCACATGTCATATGTTGAAGAAATTTAACTATTACAGACAGATAGGAAAATAGTAAAAGTCCAATTGCGGTCAGTAGTTTTCTATGGTAAAAATAGGTTCTGAAGCCTCTCACTTGAACCATCTCCTAGTTCAAAAATTTATAATGACAGAGCTGGAAAAGTAATAATCAGGTGAGGCCAGACAGCAAGGGTTAAGTTCAAATCATAGCTTATGACATACCTTATGCAGTTTCGTTTCTGCTGAAGCTGAATCATTGAGCCCTTCAACAGCTGCTGCAGAGCTCCGGGAAGAAGCAGACAACATTCTTTTCTTCAGTTTCTTTTTCATCAGGTGCATGGAAGATTTATCGATATCCTCTTCAGCTCGCTTGTCTTCCTTGTCAGATTTTGCACCTACATTCTCCTCAGCTATTTTGCTTCTCTGAAACAGTTCGCCTAGGGAGGTCCTGTTTTCCTTTTTAGCCACTGCCGTAGTCTCTGATAATTCAATTGCTGACCCAAAAAGATATCCCTGAAGTGGGCAGATTATGCTCCCACTTATATTGCTTTCTAGGCCATCCATTGGCTTGCCACTGAGGGTAATTGTGCTACCATGGCTGCTCCTTCCCATGCTGACGTGACTGTTTCTTCCAGAAGAATCATTGTACCCGTCATCCTTAGTTTCAGCTCCTAGAACCTTTTCCAACTCATCATTAATGAACTTTAGTTCATTTTCAGTTACTTCAGTTTCGTTTTCAGTTATATTCTCAACAGAAATTGAAAACTTTGGTGTCATTGGGTCACTGATGACCTGATCAGATCCCAGAGTTCCAATTGCCAGAAATCCATGGAAGATCTCAGACATTGGATGTGATGATTCATCTTCATAGTCTTCATCTCCTATTTCTGATTCTAGACCAGCAAAAGATTTTCGAAGATGCTGCTCTCGTGGGGCTTGCTTGAAAGGTTTAATGCTTGACTTCGAGATGTATTGCTGATCATCAAGCGATTGTTGGCCTAAAAAAACAATTATGAGAATGACCTACACAAGTACATTTGAATTTCTAGGAACCTTGTTTCTGTTGCAGCATATCAACAATAATTTCATGGTTTATCTGTAATTCCTGGTTATAACTCAATGTTTTCTATTAAATGGAATAGATGGGTTAAAGAGATATAATTTTCAGTTTACATGCATACAAAACTTGGATGTGTTCCATGCCCTGGGCATCGAATATCAGTCACTACAGATTCTATGCACAAAGTGAGCTTCTACTGACAATGGATGCTCAACCTCACAGAGAAATACTAGTGGAAAGTATTTACCGATGGTAAAATCTTTGAGCGGTTCACCACTGTTCTGCCGAAATTTGCGGTGCATCCAACCAAGTAGCTGTGAGAAAAAACCAAAATATCATTTAGTCGTTAGACAGAAACACTCTACAAGAATTAATGCAGAATTAACTTTGCCTTCATCTTTCTGGTTGTGCTTCAGAAAACTGAGTTTTGTTGCCTTCAGTTTAGAGGGGTGATGAGAAAAAGTGTTTTCCATAGTTTAGCTCACTGCTTATTTATCAATAGAATGTCAAACTCTTACTGCACACCTCCAATAGTCTGAGATGATGTGCGTAAAGGAAACATAGGGATAGTTACAAAAGAACTGGCTGGCTTGTGTTATCCATTCAAGTGGCTAAATGGATGGTGGGTCCTGGAGCACCCTTCCGGAAGCTGTTCATTTTCTGAGGAATGTGACTAGTTTTGATTTTTTGGTACTTTGAGTGGTGGTATCGACTCACTCCAAACCTGAGATAGTATTTTCCATTCTTCAAATAATTATATTGTTACTGTTTGAAGATGTTTAATTCTCTTTTAATTTTATTTAATCAGTTTTAAGTACCTTAATTTATTCATGTTTTGTATATAGTTGTGCTTTCTACACAAACATGTTTTGCACATGCCTCCATGGGAAAATGATAGCTTCCATTCTTATAATTGTAACAATTTCACTATAATTTGGTGGGCAGAGCCCTAAATGACTGGTGGGGTCTCTGGAGAATATTGTGTTGGACCAAAATAGGTGCAAAGATTGACAACGAAGTGGATCATTTCTCATCAGGGGCACAAACTGTATTATCTGACCTGGAAAGGTAGAAGATTAATTGGAAATTTGAAAGGACTCTTCAATATCTTATTTCCATGTATGATCCTATTAAATCTACATGTTGGATCATGCATTTGGTTGGGATCTTTGGAGGAAAGGAATTTTAATAGTAGATGACCTTTTGGTCTCCCTGACACCGTTCTTTTATCATGTTTGTAAGCAGAACATTCTCAGATGAGATCAGAAATAACACAAAGGCTAGATTGCGCTTCTGATCTTTATCCCTAACAATGGCCATGATTCTAGCATTGCTGTTGGTAACCTCAATTTCCATGATTCTAGCATTGCTGTTGGTAACCTCAATTTGTGTTACAATTTTATGAGAGAATTTTAACTTATAATGTCTGATATATGTGCTTGTTTCCCTGCAAAAAAAAAAAGGTAATATCTCGTCTTTTGGGCTTCGTAATATGATCACTTGCGTCATTTCAGAATATTTTTTGGGAACAAAATATAAAGGAAAGAAATATGCCTGGGTCCCATGTGTTTCTAAATTCAACCTTTTACAACTCCTTGTTTCTGAAACATGCTACTGTAGGACAGAAAACTTACCCTTCTGTATATTGGCTAGCTCTTGTTTGTTATTCATATTTATTGTTTACTTTCAGTAGTATCCTTTGCTTAAAGACACAGTTTCTGGGCGAGACAGGGTAAGAAGGAAGAGACGGAAGAAGGTGATGCACTCTGACACCGGTTGTGAAGTACAATAGAAGCAAACATAAATTCTTCTATTTTTTTATCCTTTTGACTGTTCCAATAATTTGTGAATGTCCTAAGTCTCTGTGAGTTGTCAGAATTTGTAAAAAGGTCTTCCACTGAGCTTTTTTTTTTAACCTTCCTAGGAAAGAAATTGATTTGATGTCAGTTCTGTCACCATATTTCTGAAACCTTCTTAAGTCATTTCCTTGAGCATGAAAAAGATCTCCTTTGCCTCAACCATGTCGTGGCTATGCTCCCCAACATTAACTGTTTGTTTCTATTTTGTCAGTGGGAGTTCAAAAGAGATGAATAATATTACTTTGCTTTATGTGGTTTATAATTTCAGGTGAAAGATTTAGGAAGAAAGGCTTCTGATTTTATTAAGGTGGGACTACGATGTACAGCACCATGCGGTGGGAAAAAACTTTTTCTTACCTCCACGAGCAAGTCATGATTTTATGTCAAATCTGCCTAAATATCCAGCTGATAAGTTGGCCTCCTCTATTTGTTTTTTGTTTTTAACCTGGTAGATTGATATTTCAATCTTAAGTTGATTAGATTTGCATTAGATCTGGTGACATAGTGGGAAAGATGCAAGGGGGGGCCATGCTCCATGAACTTGCAAACTTTTTGGCATGAGGATAGGTTTTTACCTGTGATACAAAAGCTTGTCAAATCCAACTAAAATGATTGGTATATCCACCGGTCGATGTTCAGACATGTTCATACTAACCCTTTTCACTAAATACACTGTATGGAGAGATTCTATAATCAGCGGTACAACGAATCAAACCTGATGAAAACCTTCTGCCTTCTGGTATGTTTCTATCAAACGTTTCTAAGTTTTCTATTCCTGCTGTTAAGAAGAAACATACCTGGAAAACTTGCTTCTGGATTTGGTAGTTGTTAAAATAGTCAAAAAGGAGTCAAATTCTTCTGCCTTTTTGTCAAAGTAAATCATCCTCGGTAAAATTACATTTTCAAAAAGGAGTGGAACTATAGATAAATTATCATATAAACTTTCTGTTATTCTTTATCATCGTTAGAGACATGGTTTTACAAGAATAAATTAAAACTAAAGAAATGAAGGCCAAAAATGTAATTTATTCACAATCACAATCTTTGACAGATTGGTAGATCATGATGCAAATGCAAAAAGTGAGCATTTTTTTATCAGATTCTAGGACCTGCTTAAATTTTGTGCTGACCTTTGTTTTTAGGAACCAAACATGAAACTAAAATCCGAAAGTCTTGTCAGTGACATGAGGGAAAACAATTCTGTTGTAGACAGACTGTGCCACATATTTATCCTTCTCTTGACCTTTTCCTTTTGACCAACATCCCAAAAGACCTATATATGCACTGAACATGTGTTATCAATCTCTTTGTCTAAATGCAACAGTCCTCATTCATTATGATTTGTACATGTGAAAGCAAAGCAAGTAGCCCTCCTTCATTGTGATCAGATTATGCAATGAACATTAATATGTTTGTCTAAATGCTTTTTAACTTTCATTTCTGGATTGAACCCTACTTTTAAAGCAGAGAGATCAGTTTTTCTCTTGCCTTTGAACTCTTCTTTCCTGTTGATGTGAGGCTGGTTTTACAGGCTGATTGATTATCATTGAAGAACATTGCTGCCTATGTTGTTTGGACAGTGGATAGAGGTTGAGACCTTAGACTCACTTTGAACCTTTCTGTACCATGATTTCAGTCTAATTTGAGGCCCCTGTAAGTCTTGAGCTCACCAAGACACAATTTTTAGTACTTTAGCAATAGCATGAAATCATTGTATTGAGCTAATATTCAGTTACATTACCAACTTGTGAAATATTGTAGGCTCTACGAAATTAAATTGTTAGTTGAATGTTGATATGCAATATAGT

mRNA sequence

ATGCAGATGACGATTTATGATGGTTTCGTTGGCTATGGTAAATCTAAATGTCAGAAAAGTTTCTTTTCAGGACTACCGGTGCTCTTTTTTCATGTCAGTAGTATCCTTTGCTTAAAGACACAGTTTCTGGGCGAGACAGGTGGGAGTTCAAAAGAGATGAATAATATTACTTTGCTTTATGTGGTGAAAGATTTAGGAAGAAAGGCTTCTGATTTTATTAAGGTGGGACTACGATGTACAGCACCATGCGGTGGGAAAAAACTTTTTCTTACCTCCACGAGCAAGTCATGATTTTATGTCAAATCTGCCTAAATATCCAGCTGATAAGTTGGCCTCCTCTATTTGTTTTTTGTTTTTAACCTGGTAGATTGATATTTCAATCTTAAGTTGATTAGATTTGCATTAGATCTGGTGACATAGTGGGAAAGATGCAAGGGGGGGCCATGCTCCATGAACTTGCAAACTTTTTGGCATGAGGATAGGTTTTTACCTGTGATACAAAAGCTTGTCAAATCCAACTAAAATGATTGGTATATCCACCGGTCGATGTTCAGACATGTTCATACTAACCCTTTTCACTAAATACACTGTATGGAGAGATTCTATAATCAGCGGTACAACGAATCAAACCTGATGAAAACCTTCTGCCTTCTGGTATGTTTCTATCAAACGTTTCTAAGTTTTCTATTCCTGCTGTTAAGAAGAAACATACCTGGAAAACTTGCTTCTGGATTTGGTAGTTGTTAAAATAGTCAAAAAGGAGTCAAATTCTTCTGCCTTTTTGTCAAAGTAAATCATCCTCGGTAAAATTACATTTTCAAAAAGGAGTGGAACTATAGATAAATTATCATATAAACTTTCTGTTATTCTTTATCATCGTTAGAGACATGGTTTTACAAGAATAAATTAAAACTAAAGAAATGAAGGCCAAAAATGTAATTTATTCACAATCACAATCTTTGACAGATTGGTAGATCATGATGCAAATGCAAAAAGTGAGCATTTTTTTATCAGATTCTAGGACCTGCTTAAATTTTGTGCTGACCTTTGTTTTTAGGAACCAAACATGAAACTAAAATCCGAAAGTCTTGTCAGTGACATGAGGGAAAACAATTCTGTTGTAGACAGACTGTGCCACATATTTATCCTTCTCTTGACCTTTTCCTTTTGACCAACATCCCAAAAGACCTATATATGCACTGAACATGTGTTATCAATCTCTTTGTCTAAATGCAACAGTCCTCATTCATTATGATTTGTACATGTGAAAGCAAAGCAAGTAGCCCTCCTTCATTGTGATCAGATTATGCAATGAACATTAATATGTTTGTCTAAATGCTTTTTAACTTTCATTTCTGGATTGAACCCTACTTTTAAAGCAGAGAGATCAGTTTTTCTCTTGCCTTTGAACTCTTCTTTCCTGTTGATGTGAGGCTGGTTTTACAGGCTGATTGATTATCATTGAAGAACATTGCTGCCTATGTTGTTTGGACAGTGGATAGAGGTTGAGACCTTAGACTCACTTTGAACCTTTCTGTACCATGATTTCAGTCTAATTTGAGGCCCCTGTAAGTCTTGAGCTCACCAAGACACAATTTTTAGTACTTTAGCAATAGCATGAAATCATTGTATTGAGCTAATATTCAGTTACATTACCAACTTGTGAAATATTGTAGGCTCTACGAAATTAAATTGTTAGTTGAATGTTGATATGCAATATAGT

Coding sequence (CDS)

ATGCAGATGACGATTTATGATGGTTTCGTTGGCTATGGTAAATCTAAATGTCAGAAAAGTTTCTTTTCAGGACTACCGGTGCTCTTTTTTCATGTCAGTAGTATCCTTTGCTTAAAGACACAGTTTCTGGGCGAGACAGGTGGGAGTTCAAAAGAGATGAATAATATTACTTTGCTTTATGTGGTGAAAGATTTAGGAAGAAAGGCTTCTGATTTTATTAAGGTGGGACTACGATGTACAGCACCATGCGGTGGGAAAAAACTTTTTCTTACCTCCACGAGCAAGTCATGA

Protein sequence

MQMTIYDGFVGYGKSKCQKSFFSGLPVLFFHVSSILCLKTQFLGETGGSSKEMNNITLLYVVKDLGRKASDFIKVGLRCTAPCGGKKLFLTSTSKS
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG17g10700Cp4.1LG17g10700gene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG17g10700.1:three_prime_utr:001Cp4.1LG17g10700.1:three_prime_utr:001three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG17g10700.1:exon:005Cp4.1LG17g10700.1:exon:005exon
Cp4.1LG17g10700.1:exon:004Cp4.1LG17g10700.1:exon:004exon
Cp4.1LG17g10700.1:exon:003Cp4.1LG17g10700.1:exon:003exon
Cp4.1LG17g10700.1:exon:002Cp4.1LG17g10700.1:exon:002exon
Cp4.1LG17g10700.1:exon:001Cp4.1LG17g10700.1:exon:001exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG17g10700.1:cds:001Cp4.1LG17g10700.1:cds:001CDS
Cp4.1LG17g10700.1:cds:002Cp4.1LG17g10700.1:cds:002CDS
Cp4.1LG17g10700.1:cds:003Cp4.1LG17g10700.1:cds:003CDS
Cp4.1LG17g10700.1:cds:004Cp4.1LG17g10700.1:cds:004CDS
Cp4.1LG17g10700.1:cds:005Cp4.1LG17g10700.1:cds:005CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG17g10700.1Cp4.1LG17g10700.1-proteinpolypeptide