Cp4.1LG16g08890.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g08890.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	cyclin-dependent protein kinase inhibitor SMR13
Location	Cp4.1LG16: 8308190 .. 8308552 (-)
Sequence length	363
RNA-Seq Expression	Cp4.1LG16g08890.1
Synteny	Cp4.1LG16g08890.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCCTTCTGGAGGCAAAATGGCCACGAGAACCAGAGCAAATTTACCCAACTTGAAGCTGAACAAGAAAATCAAGAAGACGAAGAAACAGCAGCAGCAGCAAAAGCTGAAGCAGATTCCAGCGGTGATACTAAACGACGCCGTTCATTTCACCGACGACTCTACTGACATCGACGGCGGCTGCAGCACTCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTAACATGTCCGCCGGCGCCGAAGAAGCCAAGACCCGCTTCGGATTGCTCATTACGACGATCGCCCATTGCCTTCTTTGCTCCTCCAGAATTAGAGCTCTTCTTCTGCGCCTTGCCGGTGCCTGACATTTCAGTCTGA

mRNA sequence

ATGGCCCCTTCTGGAGGCAAAATGGCCACGAGAACCAGAGCAAATTTACCCAACTTGAAGCTGAACAAGAAAATCAAGAAGACGAAGAAACAGCAGCAGCAGCAAAAGCTGAAGCAGATTCCAGCGGTGATACTAAACGACGCCGTTCATTTCACCGACGACTCTACTGACATCGACGGCGGCTGCAGCACTCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTAACATGTCCGCCGGCGCCGAAGAAGCCAAGACCCGCTTCGGATTGCTCATTACGACGATCGCCCATTGCCTTCTTTGCTCCTCCAGAATTAGAGCTCTTCTTCTGCGCCTTGCCGGTGCCTGACATTTCAGTCTGA

Coding sequence (CDS)

ATGGCCCCTTCTGGAGGCAAAATGGCCACGAGAACCAGAGCAAATTTACCCAACTTGAAGCTGAACAAGAAAATCAAGAAGACGAAGAAACAGCAGCAGCAGCAAAAGCTGAAGCAGATTCCAGCGGTGATACTAAACGACGCCGTTCATTTCACCGACGACTCTACTGACATCGACGGCGGCTGCAGCACTCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTAACATGTCCGCCGGCGCCGAAGAAGCCAAGACCCGCTTCGGATTGCTCATTACGACGATCGCCCATTGCCTTCTTTGCTCCTCCAGAATTAGAGCTCTTCTTCTGCGCCTTGCCGGTGCCTGACATTTCAGTCTGA

Protein sequence

MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQKLKQIPAVILNDAVHFTDDSTDIDGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDISV

Homology

[Close]

BLAST of Cp4.1LG16g08890.1 vs. ExPASy Swiss-Prot
Match: F4IWB3 (Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 GN=SMR13 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.4e-15
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 60  GGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFF 111
           GGC TPKA++ RIPE+LTCPPAPKK R + +C LRR  I FFAPPE+ELFF
Sbjct: 52  GGCCTPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of Cp4.1LG16g08890.1 vs. ExPASy Swiss-Prot
Match: Q3ECS5 (Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 GN=SMR9 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 52  TDDSTDIDGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFF 111
           T      + GC TP  E+ RIPE+LTCPPAPKK + A +C+LRR  IAFFAPP++ELFF
Sbjct: 50  TPSPVSAESGCCTP--EKSRIPEMLTCPPAPKKQKVAQNCALRRRQIAFFAPPDVELFF 106

[Close]

BLAST of Cp4.1LG16g08890.1 vs. ExPASy Swiss-Prot
Match: Q29Q81 (Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 GN=SMR6 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.3e-04
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 36  KLKQIPAVILNDAVHFTDDSTDIDGGCS-TPKAERFRIPEILTCPPAPKKPRPASDCSLR 95
           KL+  P ++        +D  + +  CS TP A+  +IPE+L CPPAP+K RPA  C   
Sbjct: 37  KLRAPPEIV----TEVEEDCYNEEEECSTTPTAKETKIPELLECPPAPRKRRPALKC--- 96

Query: 96  RSPIA--FFAPP-ELELFF 111
           RS +   FF PP +LE  F
Sbjct: 97  RSNVVREFFTPPSDLETVF 108

[Close]

BLAST of Cp4.1LG16g08890.1 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.0e-04
Identity = 28/70 (40.00%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 41  PAVILNDAVHFTDDSTDIDGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAF 100
           P  + + AV  T+D    D   +TP A+  RIP ++ CPPAPKK +     S    P  F
Sbjct: 37  PISLSSSAVSNTEDE---DLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSY--GPREF 96

Query: 101 FAPPELELFF 111
           F+PP+LE  F
Sbjct: 97  FSPPDLETVF 101

[Close]

BLAST of Cp4.1LG16g08890.1 vs. NCBI nr
Match: XP_023522908.1 (cyclin-dependent protein kinase inhibitor SMR15-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238 bits (607), Expect = 4.94e-79
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQKLKQIPAVILNDAVHFTDDSTDIDG 60
           MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQKLKQIPAVILNDAVHFTDDSTDIDG
Sbjct: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQKLKQIPAVILNDAVHFTDDSTDIDG 60

Query: 61  GCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDISV 120
           GCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDISV
Sbjct: 61  GCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDISV 120

[Close]

BLAST of Cp4.1LG16g08890.1 vs. NCBI nr
Match: KAG7010272.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228 bits (580), Expect = 6.28e-75
Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQKLKQIPAVILNDAVHFTDDSTDIDG 60
           MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQ KLKQIPA I NDAVHFTDDSTDIDG
Sbjct: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQ-KLKQIPAAIPNDAVHFTDDSTDIDG 60

Query: 61  GCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDISV 120
           GCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDISV
Sbjct: 61  GCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDISV 119

[Close]

BLAST of Cp4.1LG16g08890.1 vs. NCBI nr
Match: XP_022986710.1 (cyclin-dependent protein kinase inhibitor SMR13 [Cucurbita maxima])

HSP 1 Score: 227 bits (578), Expect = 1.40e-74
Identity = 117/122 (95.90%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQ--KLKQIPAVILNDAVHFTDDSTDI 60
           MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQ  KLKQIPAVI NDAVHFTDD +DI
Sbjct: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQQQKLKQIPAVIPNDAVHFTDDCSDI 60

Query: 61  DGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDI 120
           DGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDI
Sbjct: 61  DGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDI 120

[Close]

BLAST of Cp4.1LG16g08890.1 vs. NCBI nr
Match: XP_022944116.1 (cyclin-dependent protein kinase inhibitor SMR13 [Cucurbita moschata])

HSP 1 Score: 226 bits (577), Expect = 1.99e-74
Identity = 116/122 (95.08%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQ--KLKQIPAVILNDAVHFTDDSTDI 60
           MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQ  KLKQIPA I NDAVHFTDDSTDI
Sbjct: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQQQKLKQIPAAIPNDAVHFTDDSTDI 60

Query: 61  DGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDI 120
           DGGCSTPKAERFRIP+ILTCPPAPKKPRP+SDCSLRRSPIAFFAPPELELFFCALPVPDI
Sbjct: 61  DGGCSTPKAERFRIPDILTCPPAPKKPRPSSDCSLRRSPIAFFAPPELELFFCALPVPDI 120

[Close]

BLAST of Cp4.1LG16g08890.1 vs. NCBI nr
Match: KAG6570398.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224 bits (571), Expect = 1.80e-73
Identity = 117/125 (93.60%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQ-----KLKQIPAVILNDAVHFTDDS 60
           MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQ     KLKQIPA I NDAVHFTDDS
Sbjct: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQQQQQQKLKQIPAAIPNDAVHFTDDS 60

Query: 61  TDIDGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPV 120
           TDID GCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPV
Sbjct: 61  TDIDCGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPV 120

[Close]

BLAST of Cp4.1LG16g08890.1 vs. ExPASy TrEMBL
Match: A0A6J1JET4 (cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita maxima OX=3661 GN=LOC111484378 PE=4 SV=1)

HSP 1 Score: 227 bits (578), Expect = 6.78e-75
Identity = 117/122 (95.90%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQ--KLKQIPAVILNDAVHFTDDSTDI 60
           MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQ  KLKQIPAVI NDAVHFTDD +DI
Sbjct: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQQQKLKQIPAVIPNDAVHFTDDCSDI 60

Query: 61  DGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDI 120
           DGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDI
Sbjct: 61  DGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDI 120

[Close]

BLAST of Cp4.1LG16g08890.1 vs. ExPASy TrEMBL
Match: A0A6J1FTJ6 (cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita moschata OX=3662 GN=LOC111448665 PE=4 SV=1)

HSP 1 Score: 226 bits (577), Expect = 9.63e-75
Identity = 116/122 (95.08%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQ--KLKQIPAVILNDAVHFTDDSTDI 60
           MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQ  KLKQIPA I NDAVHFTDDSTDI
Sbjct: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQQQKLKQIPAAIPNDAVHFTDDSTDI 60

Query: 61  DGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDI 120
           DGGCSTPKAERFRIP+ILTCPPAPKKPRP+SDCSLRRSPIAFFAPPELELFFCALPVPDI
Sbjct: 61  DGGCSTPKAERFRIPDILTCPPAPKKPRPSSDCSLRRSPIAFFAPPELELFFCALPVPDI 120

[Close]

BLAST of Cp4.1LG16g08890.1 vs. ExPASy TrEMBL
Match: A0A0A0L0Q1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291940 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 2.09e-46
Identity = 90/123 (73.17%), Postives = 97/123 (78.86%), Query Frame = 0


Query: 1   MAPSGGKMATRT-RANLPNLKLNKKIKKTKKQQQQQKLKQIPA-VILNDAVHFTDDSTDI 60
           MAPSG +MATRT R  LPNLKL KKIKKT  ++Q  +  +IP  V  ND V F D+ +D 
Sbjct: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSD- 60

Query: 61  DGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFF-CALPVPD 120
            GGCSTPKAER RIPEILTCPPAPKKPR  SDCSLRRSPIAFFAPPELELFF  ALPVPD
Sbjct: 61  -GGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPD 120

[Close]

BLAST of Cp4.1LG16g08890.1 vs. ExPASy TrEMBL
Match: A0A6J1D3Z6 (cyclin-dependent protein kinase inhibitor SMR15-like OS=Momordica charantia OX=3673 GN=LOC111017372 PE=4 SV=1)

HSP 1 Score: 147 bits (370), Expect = 2.57e-43
Identity = 85/121 (70.25%), Postives = 95/121 (78.51%), Query Frame = 0


Query: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQKLKQIPAVIL-NDAVHFTDDSTDID 60
           MAPSGG+MA RTR N  +LKL KK+KKTKKQQQQ+    +PA    ND V  ++D  DID
Sbjct: 1   MAPSGGRMAARTRGNSQSLKL-KKMKKTKKQQQQK----LPAPATENDVVQCSND--DID 60

Query: 61  GGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDIS 120
           GGCSTP+AERFRIPEI+TCPPAPKK RP SDCS RRSPIAFFAPPELELFF    +PDI 
Sbjct: 61  GGCSTPRAERFRIPEIVTCPPAPKKQRPVSDCSFRRSPIAFFAPPELELFFF-FALPDIP 113

[Close]

BLAST of Cp4.1LG16g08890.1 vs. ExPASy TrEMBL
Match: A0A6J1K7R4 (cyclin-dependent protein kinase inhibitor SMR9-like OS=Cucurbita maxima OX=3661 GN=LOC111491400 PE=4 SV=1)

HSP 1 Score: 139 bits (349), Expect = 4.16e-40
Identity = 79/116 (68.10%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 8   MATRTRANLPNLKLNKKIKKTKKQQQQQKLKQIPAVILNDAVHFTDD---STDIDGGCST 67
           MATR R N+PN KLNKK+KKT  ++ QQ   QIP    ND V F DD   + D+ GG ST
Sbjct: 1   MATRPRRNIPNSKLNKKMKKTTTKKPQQPQNQIPPP-QNDVVQFPDDDFDNDDVGGGYST 60

Query: 68  PKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDISV 120
           PKAERFRIPEILTCPP PKK RP SDCS RRSPIAFFAPPELELFF  +  PDISV
Sbjct: 61  PKAERFRIPEILTCPPGPKKQRPVSDCSFRRSPIAFFAPPELELFFF-ISRPDISV 114

[Close]

BLAST of Cp4.1LG16g08890.1 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 6.0e-16
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 60  GGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFF 111
           GGC TPKA++ RIPE+LTCPPAPKK R + +C LRR  I FFAPPE+ELFF
Sbjct: 52  GGCCTPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of Cp4.1LG16g08890.1 vs. TAIR 10
Match: AT1G51355.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20898.1); Has 52 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 9.6e-14
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 52  TDDSTDIDGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFF 111
           T      + GC TP  E+ RIPE+LTCPPAPKK + A +C+LRR  IAFFAPP++ELFF
Sbjct: 50  TPSPVSAESGCCTP--EKSRIPEMLTCPPAPKKQKVAQNCALRRRQIAFFAPPDVELFF 106

[Close]

BLAST of Cp4.1LG16g08890.1 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 36  KLKQIPAVILNDAVHFTDDSTDIDGGCS-TPKAERFRIPEILTCPPAPKKPRPASDCSLR 95
           KL+  P ++        +D  + +  CS TP A+  +IPE+L CPPAP+K RPA  C   
Sbjct: 37  KLRAPPEIV----TEVEEDCYNEEEECSTTPTAKETKIPELLECPPAPRKRRPALKC--- 96

Query: 96  RSPIA--FFAPP-ELELFF 111
           RS +   FF PP +LE  F
Sbjct: 97  RSNVVREFFTPPSDLETVF 108

[Close]

BLAST of Cp4.1LG16g08890.1 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.1e-05
Identity = 28/70 (40.00%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 41  PAVILNDAVHFTDDSTDIDGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAF 100
           P  + + AV  T+D    D   +TP A+  RIP ++ CPPAPKK +     S    P  F
Sbjct: 37  PISLSSSAVSNTEDE---DLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSY--GPREF 96

Query: 101 FAPPELELFF 111
           F+PP+LE  F
Sbjct: 97  FSPPDLETVF 101

[Close]

BLAST of Cp4.1LG16g08890.1 vs. TAIR 10
Match: AT1G10690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 59 Blast hits to 59 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 8.1e-05
Identity = 21/48 (43.75%), Postives = 28/48 (58.33%), Query Frame = 0


Query: 63  STPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFF 111
           +TP A   RIP +  CP APKK +P+  CS       +F+PP+LE  F
Sbjct: 57  TTPTAVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVF 104

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g08890.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IWB3	8.4e-15	70.59	Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q3ECS5	1.3e-12	59.32	Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q29Q81	2.3e-04	40.51	Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	3.0e-04	40.00	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cp4.1LG16g08890.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522908.1	4.94e-79	100.00	cyclin-dependent protein kinase inhibitor SMR15-like [Cucurbita pepo subsp. pepo...	[more]
KAG7010272.1	6.28e-75	97.50	Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma...	[more]
XP_022986710.1	1.40e-74	95.90	cyclin-dependent protein kinase inhibitor SMR13 [Cucurbita maxima]	[more]
XP_022944116.1	1.99e-74	95.08	cyclin-dependent protein kinase inhibitor SMR13 [Cucurbita moschata]	[more]
KAG6570398.1	1.80e-73	93.60	Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma...	[more]

BLAST of Cp4.1LG16g08890.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JET4	6.78e-75	95.90	cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FTJ6	9.63e-75	95.08	cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0L0Q1	2.09e-46	73.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291940 PE=4 SV=1	[more]
A0A6J1D3Z6	2.57e-43	70.25	cyclin-dependent protein kinase inhibitor SMR15-like OS=Momordica charantia OX=3...	[more]
A0A6J1K7R4	4.16e-40	68.10	cyclin-dependent protein kinase inhibitor SMR9-like OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of Cp4.1LG16g08890.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20898.1	6.0e-16	70.59	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G51355.1	9.6e-14	59.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G40460.1	1.6e-05	40.51	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G60783.1	2.1e-05	40.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G10690.1	8.1e-05	43.75	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR33142:SF8	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 10..111
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 10..111

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG16g08890	Cp4.1LG16g08890	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g08890.1:exon:001	Cp4.1LG16g08890.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g08890.1:cds:001	Cp4.1LG16g08890.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g08890.1	Cp4.1LG16g08890.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication
biological_process	GO:0045839	negative regulation of mitotic nuclear division
cellular_component	GO:0005634	nucleus