Cp4.1LG15g07800.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g07800.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein THYLAKOID FORMATION1, chloroplastic
Location	Cp4.1LG15: 7927075 .. 7930081 (-)
Sequence length	1180
RNA-Seq Expression	Cp4.1LG15g07800.1
Synteny	Cp4.1LG15g07800.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATGACCTCTCAGTCACACTCTCTGTTCCTTCTTTTTCCCGAGAAAATTTCTTGGAATTTTGTGTCTTCTCTACGACTTTTCTCTCACTCTTCTTCTTAGATATGAAATCCATTTCCTCCGGGAGTTCGTAATCTTCGCAAGTTTTTTCTCATTCTTCTTCAATGGCGGCTGTAAATTCCGTATCATTCACGGCATTAAGTCAATGTTCTGATAGACGATTGCCGATTCCCTCGGCTCGTTCACTCGCCTCGCATTTCGACGGGTTTCGTTTTCGTAAGAGCGTTTTCTGTCATTATTCCGGAGTTCGGACATCTAGCTTCAGTTCTCGCATGGTTATTCATTGCATGGCATCTGGAACAGGTAGCTTCTGGTGATTTGTTTTCCTTGCTCGCTTACTAGATCGTTAAATTGTCAGAATATGGCAGCAGAAGAAAAGAGGCTCGTTCCGCTGATTCCGATTTGAGTTTAATTTGTTTTTTCCTTAATTGTGGAGATTGAACATTATGGAGGGAATTAGAAGATTTAAGTAAGAATTAGGCTATCAGTTGGATCATTTCTAAACTATCTGTAGTGTGTTGAGATTTCTCTAGTTTGCTTTCTTGCTACTTGAGTCTAGTAACTGATGCGTTATTTTGAAGGCTCAGATGTAACAACCGTAGCCGAGACTAAAGCGAACTTCCTCAAGGCGTATAAACGGCCTATCCCTAGCATTTACAACACCGTTGTGCAAGAATTGATTGTCCAACAGCATTTGATGAGGTATAAGAAGACATACCGTTATGACCCTGTTTTCGCCCTTGGTTTTGTTACTGTGTATGATCGACTTATGGAAGGGTACCCTAGCGATGAGGATCGTGATGCCATTTTCCAAGCATACATTAACGCATTGAATGAGGATCCAGAGCAATATAGGTTTGGCCATGTATTCCCCTTTTCTTTTACCATCCCCGATGTCTATCTTCTCGTCGGTTAGAAATTTCATTACCTTACTTATACGTAGACACTGTTGAGTTAAAAAATCATAACCCGATTCCCCTTATAGCAAAATGACGGCGATTCTGATTTGGACTTGGCTTTCTAAACGACTAGATTGATCTGTCTAATTAGCTGTTATCAAATGTTAGTGGATGTTCACAAAGTAGTATTAATGACTTTTATTTGTAGCTGGCAATCAAATTTTACGAACGTTTATTCTCTGTTCAATTACTCCAAGAGTCTAAGTTTTTCCCTGTATATTAATTCCAACCTTCGATCATTCTTCCAATAATTTCAAGAATGTCTTTCTTTATTTAAAATACATATATATACTTTTTTTGTACTGTCAAGAATTGATGCCCAAAAATTGGAAGAGTGGGCTCGGTCTCAGACTGCAGCTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTCGAGAGTATTTTGAAGGACATTGCAGAACGAGCTGGGGGCAAGGGGAATTTCAGCTACAGCCGATTTTTTGCTATTGGGCTATTTCGACTCCTTGAATTGGCAAATGCTTCTGAACCCAGTATCTTGGAAAAGGTTATTTCATATTCCTTTTTGTGATATAGCTTTTAAGTAGATGAACATTTTGATGTGACAGTTTATTGAGCTCATTATTGCTAAATTGAATGATAGCTAGCCCCTCTCAAAGGACTTTTACTGATAGATTATATTCTTTCTCTGAGTGCTACCATTTGTAAATTATTATTGTGTTTCTTCCTCATTAGTTACCTTTTTAGTCGTTATAGAAATTGGAAGTTAGTGAAATATTGCCTAACCTTATTCTGTCCGAAAGAATTAAGGTCAAGAATTCTTTCCTGCATTAGGCTGCATTTTATTTGTAGCTAACATCAGTCTATTTGCGGTATTCCCGGCCCCACACACACACACACACACACACACACACACGTACAATGCTTTCTTGAGATTTCCTTTCACTCTTGTGAAGGCCAACTTTATTTATCGTGTCTATCACTGAAGATACGATACTCCTGTTCTTTTACATCAGCTAAAGCTATATAATTGAACAGTTTCTTTTACATAGCTGAAGCCATGTGATGGAGTTTTGACCGAGTATTGGCATCTAACTTCTTGCTACTTCTGAACAGCTATGTGCCGCTTTAAATGTTGACAAAAAAGGCGTGGACCGAGACCTTGATGTATACCGTAACCTGCTTTCGAAGTTAGTTCAGGCGAAAGAGCTCCTAAAGGAATATGTCGATAGGTAAGAGACTGCTAAGTTCATGGTAGATTAATATGCGCTATCAAACCATCATTCTTTCATAGATTTTATGAATCTATAATCGATTGGAAAACTGTCAATCTTGTATTTGTTGAATCTCCTGGAAGTCACCCTCCCTCGTAGCATTTATATTTATTGGATATCAATCCTTGATTCTACATCTTGCCATATCGAATCCATGGACCTTGGCTGAGGCCTAAATGAGGTAGAATTGGGTGGTTCTAAGAGTCAGGCTTTGAGGATAAAAGTTGTATGATTAACCAGTGGTGCATTTCAATTGTACAGAGAGAAGAAGAAAAGAGATGAGAGGGCAGGATCACAGACGGCTAGTGAGGCCATAACGAAATGCTTGGGAGAATACAGCATGCAGACTGGGTTGTGAGAGCTGATTGGAGCACTGCCTAATTTGAGATAGACTTGAGAGTTACAGCAATATTCTAAAGTACCTGATAGAACTGCGTCTGTAATGTATTGTTGGGTATTTACTCAATTGGTGAATTTTGTATTCAGTCAGGCACTACCTTTATTCTCATTTGATATAACCACCTCAAGCTATTTTTTAATCATCTGTATTACATATTTTGATTGCAATTGTCAATACAAATGCTTTTGCACAGATATTTGACCATTAGCTTTTGTTTATACAATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTCAAAATATGGGTGATCCATGGGCCGAATTAATCGATGGGTAACAAATTGTAGGCCCATTTATGAAGAGTCCAACAAGGAT

mRNA sequence

TTATGACCTCTCAGTCACACTCTCTGTTCCTTCTTTTTCCCGAGAAAATTTCTTGGAATTTTGTGTCTTCTCTACGACTTTTCTCTCACTCTTCTTCTTAGATATGAAATCCATTTCCTCCGGGAGTTCGTAATCTTCGCAAGTTTTTTCTCATTCTTCTTCAATGGCGGCTGTAAATTCCGTATCATTCACGGCATTAAGTCAATGTTCTGATAGACGATTGCCGATTCCCTCGGCTCGTTCACTCGCCTCGCATTTCGACGGGTTTCGTTTTCGTAAGAGCGTTTTCTGTCATTATTCCGGAGTTCGGACATCTAGCTTCAGTTCTCGCATGGTTATTCATTGCATGGCATCTGGAACAGGCTCAGATGTAACAACCGTAGCCGAGACTAAAGCGAACTTCCTCAAGGCGTATAAACGGCCTATCCCTAGCATTTACAACACCGTTGTGCAAGAATTGATTGTCCAACAGCATTTGATGAGGTATAAGAAGACATACCGTTATGACCCTGTTTTCGCCCTTGGTTTTGTTACTGTGTATGATCGACTTATGGAAGGGTACCCTAGCGATGAGGATCGTGATGCCATTTTCCAAGCATACATTAACGCATTGAATGAGGATCCAGAGCAATATAGAATTGATGCCCAAAAATTGGAAGAGTGGGCTCGGTCTCAGACTGCAGCTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTCGAGAGTATTTTGAAGGACATTGCAGAACGAGCTGGGGGCAAGGGGAATTTCAGCTACAGCCGATTTTTTGCTATTGGGCTATTTCGACTCCTTGAATTGGCAAATGCTTCTGAACCCAGTATCTTGGAAAAGCTATGTGCCGCTTTAAATGTTGACAAAAAAGGCGTGGACCGAGACCTTGATGTATACCGTAACCTGCTTTCGAAGTTAGTTCAGGCGAAAGAGCTCCTAAAGGAATATGTCGATAGAGAGAAGAAGAAAAGAGATGAGAGGGCAGGATCACAGACGGCTAGTGAGGCCATAACGAAATGCTTGGGAGAATACAGCATGCAGACTGGGTTGTGAGAGCTGATTGGAGCACTGCCTAATTTGAGATAGACTTGAGAGTTACAGCAATATTCTAAAGTACCTGATAGAACTGCGTCTGTAATGCCCATTTATGAAGAGTCCAACAAGGAT

Coding sequence (CDS)

ATGGCGGCTGTAAATTCCGTATCATTCACGGCATTAAGTCAATGTTCTGATAGACGATTGCCGATTCCCTCGGCTCGTTCACTCGCCTCGCATTTCGACGGGTTTCGTTTTCGTAAGAGCGTTTTCTGTCATTATTCCGGAGTTCGGACATCTAGCTTCAGTTCTCGCATGGTTATTCATTGCATGGCATCTGGAACAGGCTCAGATGTAACAACCGTAGCCGAGACTAAAGCGAACTTCCTCAAGGCGTATAAACGGCCTATCCCTAGCATTTACAACACCGTTGTGCAAGAATTGATTGTCCAACAGCATTTGATGAGGTATAAGAAGACATACCGTTATGACCCTGTTTTCGCCCTTGGTTTTGTTACTGTGTATGATCGACTTATGGAAGGGTACCCTAGCGATGAGGATCGTGATGCCATTTTCCAAGCATACATTAACGCATTGAATGAGGATCCAGAGCAATATAGAATTGATGCCCAAAAATTGGAAGAGTGGGCTCGGTCTCAGACTGCAGCTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTCGAGAGTATTTTGAAGGACATTGCAGAACGAGCTGGGGGCAAGGGGAATTTCAGCTACAGCCGATTTTTTGCTATTGGGCTATTTCGACTCCTTGAATTGGCAAATGCTTCTGAACCCAGTATCTTGGAAAAGCTATGTGCCGCTTTAAATGTTGACAAAAAAGGCGTGGACCGAGACCTTGATGTATACCGTAACCTGCTTTCGAAGTTAGTTCAGGCGAAAGAGCTCCTAAAGGAATATGTCGATAGAGAGAAGAAGAAAAGAGATGAGAGGGCAGGATCACAGACGGCTAGTGAGGCCATAACGAAATGCTTGGGAGAATACAGCATGCAGACTGGGTTGTGA

Protein sequence

MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIHCMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFALGFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFASREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL

Homology

[Close]

BLAST of Cp4.1LG15g07800.1 vs. ExPASy Swiss-Prot
Match: Q7XAB8 (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum OX=4113 GN=THF1 PE=2 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 7.3e-108
Identity = 202/294 (68.71%), Postives = 247/294 (84.01%), Query Frame = 0


Query: 1   MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60
           MAAV SVSF+A++Q ++R+  + S+RS+    D FRFR +       VR+S+ +SR V+H
Sbjct: 1   MAAVTSVSFSAITQSAERKSSVSSSRSI----DTFRFRSNFSFDSVNVRSSNSTSRFVVH 60

Query: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120
           C  S + +D+ TVA+TK  FL AYKRPIP++YNTV+QELIVQQHL RYKK+Y+YDPVFAL
Sbjct: 61  C-TSSSAADLPTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFAL 120

Query: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180
           GFVTVYD+LMEGYPS+EDR+AIF+AYI AL EDPEQYR DAQKLEEWAR+Q A +LV+F+
Sbjct: 121 GFVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFS 180

Query: 181 SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240
           S+EGE+E+I KDIA+RAG K  F YSR FA+GLFRLLELAN ++P+ILEKLCAALNV+KK
Sbjct: 181 SKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKK 240

Query: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEY 295
            VDRDLDVYRNLLSKLVQAKELLKEYV+REKKKR ER  +Q A+E +TKCLG+Y
Sbjct: 241 SVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKRGERE-TQKANETVTKCLGDY 288

[Close]

BLAST of Cp4.1LG15g07800.1 vs. ExPASy Swiss-Prot
Match: Q9SKT0 (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THF1 PE=1 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 3.1e-106
Identity = 204/292 (69.86%), Postives = 249/292 (85.27%), Query Frame = 0


Query: 3   AVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFS-SRMVIHC 62
           A++S+SF AL Q SD+     S+R LAS          +   +S +  +S S S+ +IHC
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLASAI-------RICTKFSRLSLNSRSTSKSLIHC 64

Query: 63  MASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFALG 122
           M++ T +DV  V+ETK+ FLKAYKRPIPSIYNTV+QELIVQQHLMRYKKTYRYDPVFALG
Sbjct: 65  MSNVT-ADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALG 124

Query: 123 FVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFAS 182
           FVTVYD+LMEGYPSD+DRDAIF+AYI ALNEDP+QYRIDAQK+EEWARSQT+ASLV+F+S
Sbjct: 125 FVTVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSS 184

Query: 183 REGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKKG 242
           +EG++E++LKDIA RAG K  FSYSRFFA+GLFRLLELA+A++P++L+KLCA+LN++KK 
Sbjct: 185 KEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKS 244

Query: 243 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGE 294
           VDRDLDVYRNLLSKLVQAKELLKEYV+REKKK+ ERA SQ A+E I+KCLG+
Sbjct: 245 VDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGD 287

[Close]

BLAST of Cp4.1LG15g07800.1 vs. ExPASy Swiss-Prot
Match: Q84PB7 (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=THF1 PE=2 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 2.4e-98
Identity = 193/289 (66.78%), Postives = 234/289 (80.97%), Query Frame = 0


Query: 1   MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60
           MAA++S+ F AL + +D R   PS  + A+         SV             SR V+ 
Sbjct: 1   MAAISSLPFAALRRAADCR---PSTAAAAAGAGAGAVVLSV--------RPRRGSRSVVR 60

Query: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120
           C+A+  G    TVAETK NFLK+YKRPI SIY+TV+QEL+VQQHLMRYK TY+YD VFAL
Sbjct: 61  CVAT-AGDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFAL 120

Query: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180
           GFVTVYD+LMEGYPS+EDRDAIF+AYI ALNEDPEQYR DAQK+EEWARSQ   SLVEF+
Sbjct: 121 GFVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFS 180

Query: 181 SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240
           S++GE+E+ILKDI+ERA GKG+FSYSRFFA+GLFRLLELANA+EP+IL+KLCAALN++K+
Sbjct: 181 SKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKR 240

Query: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITK 290
            VDRDLDVYRN+LSKLVQAKELLKEYV+REKKKR+ER+ +  ++EA+TK
Sbjct: 241 SVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277

[Close]

BLAST of Cp4.1LG15g07800.1 vs. ExPASy Swiss-Prot
Match: B0C3M8 (Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=thf1 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.8e-37
Identity = 85/230 (36.96%), Postives = 141/230 (61.30%), Query Frame = 0


Query: 68  SDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFALGFVTVYD 127
           +++ TV++TK  F   + RP+ S+Y  VV+EL+V+ HL+R  + +RYDP+FALG  T +D
Sbjct: 2   NNLRTVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFD 61

Query: 128 RLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEF---ASREG 187
           R M+GY  + D+DAIF A   A   DP Q + D Q+L E A+S++A  ++++   A+  G
Sbjct: 62  RFMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSG 121

Query: 188 --EVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANAS----EPSILE---KLCAAL 247
             E++  L++IA+       F YSR FAIGLF LLEL+  +    E S+ E    +C  L
Sbjct: 122 GDELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVL 181

Query: 248 NVDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASE 286
           N+ +  + +DL++YR  L K+ Q ++ + + ++ +KK+R+     +  S+
Sbjct: 182 NISESKLQKDLEIYRGNLDKIAQVRQAMDDILEAQKKRREADQAKKEGSD 227

[Close]

BLAST of Cp4.1LG15g07800.1 vs. ExPASy Swiss-Prot
Match: Q116P5 (Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=thf1 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-33
Identity = 78/220 (35.45%), Postives = 130/220 (59.09%), Query Frame = 0


Query: 68  SDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFALGFVTVYD 127
           ++  TV++TK  F   + RPI SIYN V++EL+V+ HL+     Y Y+P +ALG VT +D
Sbjct: 2   NNTRTVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFD 61

Query: 128 RLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFASREGEVE 187
           R M+GY   ED+ +IF A I    EDP +YR DA+ LE+ A   +A+ ++ +      ++
Sbjct: 62  RFMQGYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNID 121

Query: 188 S--ILKDIAERAGGKGNFSYSRFFAIGLFRLLELANA-------SEPSILEKLCAALNVD 247
           +   L+D          F YSR FAIGLF LLE+ +             L+K+C +LN+ 
Sbjct: 122 NTQYLQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLV 181

Query: 248 KKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERA 279
           ++ + +D+D+Y + L ++ QA+  +++ +   +KKR++R+
Sbjct: 182 EEKLLKDIDLYLSNLERVAQARSAMEDTLAAMRKKREKRS 221

[Close]

BLAST of Cp4.1LG15g07800.1 vs. NCBI nr
Match: XP_023554555.1 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 581 bits (1498), Expect = 6.39e-209
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0


Query: 1   MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60
           MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH
Sbjct: 1   MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60

Query: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120
           CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL
Sbjct: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120

Query: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180
           GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA
Sbjct: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180

Query: 181 SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240
           SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK
Sbjct: 181 SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240

Query: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 300
           GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL
Sbjct: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 300

[Close]

BLAST of Cp4.1LG15g07800.1 vs. NCBI nr
Match: XP_022969187.1 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 576 bits (1484), Expect = 8.70e-207
Identity = 297/300 (99.00%), Postives = 298/300 (99.33%), Query Frame = 0


Query: 1   MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60
           MAAVNSVSF+ LSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH
Sbjct: 1   MAAVNSVSFSGLSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60

Query: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120
           CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL
Sbjct: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120

Query: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180
           GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA
Sbjct: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180

Query: 181 SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240
           SREGEVESILKDIAERAG KGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK
Sbjct: 181 SREGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240

Query: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 300
           GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL
Sbjct: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 300

[Close]

BLAST of Cp4.1LG15g07800.1 vs. NCBI nr
Match: XP_022952156.1 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 574 bits (1480), Expect = 3.54e-206
Identity = 296/300 (98.67%), Postives = 298/300 (99.33%), Query Frame = 0


Query: 1   MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60
           MAAVNSVSF+ALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRT SF+SRMVIH
Sbjct: 1   MAAVNSVSFSALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTPSFNSRMVIH 60

Query: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120
           CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL
Sbjct: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120

Query: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180
           GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA
Sbjct: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180

Query: 181 SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240
           SREGEVESILKDIAERAG KGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK
Sbjct: 181 SREGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240

Query: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 300
           GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL
Sbjct: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 300

[Close]

BLAST of Cp4.1LG15g07800.1 vs. NCBI nr
Match: XP_023554556.1 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 572 bits (1475), Expect = 1.90e-205
Identity = 298/300 (99.33%), Postives = 298/300 (99.33%), Query Frame = 0


Query: 1   MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60
           MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH
Sbjct: 1   MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60

Query: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120
           CMASGT  DVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL
Sbjct: 61  CMASGT--DVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120

Query: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180
           GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA
Sbjct: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180

Query: 181 SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240
           SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK
Sbjct: 181 SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240

Query: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 300
           GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL
Sbjct: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 298

[Close]

BLAST of Cp4.1LG15g07800.1 vs. NCBI nr
Match: XP_022969189.1 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 567 bits (1461), Expect = 2.59e-203
Identity = 295/300 (98.33%), Postives = 296/300 (98.67%), Query Frame = 0


Query: 1   MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60
           MAAVNSVSF+ LSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH
Sbjct: 1   MAAVNSVSFSGLSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60

Query: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120
           CMASGT  DVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL
Sbjct: 61  CMASGT--DVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120

Query: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180
           GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA
Sbjct: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180

Query: 181 SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240
           SREGEVESILKDIAERAG KGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK
Sbjct: 181 SREGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240

Query: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 300
           GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL
Sbjct: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 298

[Close]

BLAST of Cp4.1LG15g07800.1 vs. ExPASy TrEMBL
Match: A0A6J1HVN0 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468259 PE=3 SV=1)

HSP 1 Score: 576 bits (1484), Expect = 4.21e-207
Identity = 297/300 (99.00%), Postives = 298/300 (99.33%), Query Frame = 0


Query: 1   MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60
           MAAVNSVSF+ LSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH
Sbjct: 1   MAAVNSVSFSGLSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60

Query: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120
           CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL
Sbjct: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120

Query: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180
           GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA
Sbjct: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180

Query: 181 SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240
           SREGEVESILKDIAERAG KGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK
Sbjct: 181 SREGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240

Query: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 300
           GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL
Sbjct: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 300

[Close]

BLAST of Cp4.1LG15g07800.1 vs. ExPASy TrEMBL
Match: A0A6J1GJH0 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454918 PE=3 SV=1)

HSP 1 Score: 574 bits (1480), Expect = 1.71e-206
Identity = 296/300 (98.67%), Postives = 298/300 (99.33%), Query Frame = 0


Query: 1   MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60
           MAAVNSVSF+ALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRT SF+SRMVIH
Sbjct: 1   MAAVNSVSFSALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTPSFNSRMVIH 60

Query: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120
           CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL
Sbjct: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120

Query: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180
           GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA
Sbjct: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180

Query: 181 SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240
           SREGEVESILKDIAERAG KGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK
Sbjct: 181 SREGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240

Query: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 300
           GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL
Sbjct: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 300

[Close]

BLAST of Cp4.1LG15g07800.1 vs. ExPASy TrEMBL
Match: A0A6J1I1V8 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468259 PE=3 SV=1)

HSP 1 Score: 567 bits (1461), Expect = 1.25e-203
Identity = 295/300 (98.33%), Postives = 296/300 (98.67%), Query Frame = 0


Query: 1   MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60
           MAAVNSVSF+ LSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH
Sbjct: 1   MAAVNSVSFSGLSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60

Query: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120
           CMASGT  DVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL
Sbjct: 61  CMASGT--DVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120

Query: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180
           GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA
Sbjct: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180

Query: 181 SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240
           SREGEVESILKDIAERAG KGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK
Sbjct: 181 SREGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240

Query: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 300
           GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL
Sbjct: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 298

[Close]

BLAST of Cp4.1LG15g07800.1 vs. ExPASy TrEMBL
Match: A0A6J1GJN0 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454918 PE=3 SV=1)

HSP 1 Score: 565 bits (1457), Expect = 5.10e-203
Identity = 294/300 (98.00%), Postives = 296/300 (98.67%), Query Frame = 0


Query: 1   MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60
           MAAVNSVSF+ALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRT SF+SRMVIH
Sbjct: 1   MAAVNSVSFSALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTPSFNSRMVIH 60

Query: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120
           CMASGT  DVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL
Sbjct: 61  CMASGT--DVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120

Query: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180
           GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA
Sbjct: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180

Query: 181 SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240
           SREGEVESILKDIAERAG KGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK
Sbjct: 181 SREGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240

Query: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 300
           GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL
Sbjct: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTGL 298

[Close]

BLAST of Cp4.1LG15g07800.1 vs. ExPASy TrEMBL
Match: A0A6J1C3B8 (protein THYLAKOID FORMATION1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007981 PE=3 SV=1)

HSP 1 Score: 534 bits (1376), Expect = 1.13e-190
Identity = 274/299 (91.64%), Postives = 292/299 (97.66%), Query Frame = 0


Query: 1   MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60
           MAAVNSVSF+ALSQCS+RRL +PSARSLAS+FDGFRFR SVFCHYSGVRTSS+SSRMV+H
Sbjct: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60

Query: 61  CMASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFAL 120
           CM++GT  DVTTVAETKANFLK YKRPIPSIYNTV+QELIVQQHLMRYK+TYRYDPVFAL
Sbjct: 61  CMSAGT--DVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFAL 120

Query: 121 GFVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFA 180
           GFVTVYD+LMEGYPSDEDR+AIFQAYI ALNEDPEQYRIDA+KLEEWARSQTAASLVEFA
Sbjct: 121 GFVTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFA 180

Query: 181 SREGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKK 240
           S+EGEVESILKDIAERAGGKG+FSYSRFFAIGLFRLLELANA+EPSILEKLCAALNV+KK
Sbjct: 181 SKEGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKK 240

Query: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTG 299
            VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTA+EAITKCLGEYSMQTG
Sbjct: 241 SVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTG 297

[Close]

BLAST of Cp4.1LG15g07800.1 vs. TAIR 10
Match: AT2G20890.1 (photosystem II reaction center PSB29 protein )

HSP 1 Score: 386.3 bits (991), Expect = 2.2e-107
Identity = 204/292 (69.86%), Postives = 249/292 (85.27%), Query Frame = 0


Query: 3   AVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFS-SRMVIHC 62
           A++S+SF AL Q SD+     S+R LAS          +   +S +  +S S S+ +IHC
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLASAI-------RICTKFSRLSLNSRSTSKSLIHC 64

Query: 63  MASGTGSDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFALG 122
           M++ T +DV  V+ETK+ FLKAYKRPIPSIYNTV+QELIVQQHLMRYKKTYRYDPVFALG
Sbjct: 65  MSNVT-ADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALG 124

Query: 123 FVTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFAS 182
           FVTVYD+LMEGYPSD+DRDAIF+AYI ALNEDP+QYRIDAQK+EEWARSQT+ASLV+F+S
Sbjct: 125 FVTVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSS 184

Query: 183 REGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKKG 242
           +EG++E++LKDIA RAG K  FSYSRFFA+GLFRLLELA+A++P++L+KLCA+LN++KK 
Sbjct: 185 KEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKS 244

Query: 243 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGE 294
           VDRDLDVYRNLLSKLVQAKELLKEYV+REKKK+ ERA SQ A+E I+KCLG+
Sbjct: 245 VDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGD 287

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g07800.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XAB8	7.3e-108	68.71	Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum OX=4113 GN=THF1...	[more]
Q9SKT0	3.1e-106	69.86	Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q84PB7	2.4e-98	66.78	Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica OX=3...	[more]
B0C3M8	8.8e-37	36.96	Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=thf1 PE=3 ...	[more]
Q116P5	1.6e-33	35.45	Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=thf1 PE=3 ...	[more]

BLAST of Cp4.1LG15g07800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023554555.1	6.39e-209	100.00	protein THYLAKOID FORMATION1, chloroplastic-like isoform X1 [Cucurbita pepo subs...	[more]
XP_022969187.1	8.70e-207	99.00	protein THYLAKOID FORMATION1, chloroplastic-like isoform X1 [Cucurbita maxima]	[more]
XP_022952156.1	3.54e-206	98.67	protein THYLAKOID FORMATION1, chloroplastic-like isoform X1 [Cucurbita moschata]	[more]
XP_023554556.1	1.90e-205	99.33	protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita pepo subs...	[more]
XP_022969189.1	2.59e-203	98.33	protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG15g07800.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVN0	4.21e-207	99.00	protein THYLAKOID FORMATION1, chloroplastic-like isoform X1 OS=Cucurbita maxima ...	[more]
A0A6J1GJH0	1.71e-206	98.67	protein THYLAKOID FORMATION1, chloroplastic-like isoform X1 OS=Cucurbita moschat...	[more]
A0A6J1I1V8	1.25e-203	98.33	protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 OS=Cucurbita maxima ...	[more]
A0A6J1GJN0	5.10e-203	98.00	protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 OS=Cucurbita moschat...	[more]
A0A6J1C3B8	1.13e-190	91.64	protein THYLAKOID FORMATION1, chloroplastic isoform X1 OS=Momordica charantia OX...	[more]

BLAST of Cp4.1LG15g07800.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20890.1	2.2e-107	69.86	photosystem II reaction center PSB29 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 249..276
None	No IPR available	PANTHER	PTHR34793:SF7	PHOTOSYSTEM II BIOGENESIS PROTEIN	coord: 1..288
IPR017499	Protein Thf1	PFAM	PF11264	ThylakoidFormat	coord: 72..277 e-value: 1.5E-76 score: 256.8
IPR017499	Protein Thf1	TIGRFAM	TIGR03060	TIGR03060	coord: 70..274 e-value: 4.9E-49 score: 164.9
IPR017499	Protein Thf1	PANTHER	PTHR34793	PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC	coord: 1..288
IPR017499	Protein Thf1	HAMAP	MF_01843	Thf1	coord: 67..275 score: 22.604958

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG15g07800	Cp4.1LG15g07800	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g07800.1:exon:006	Cp4.1LG15g07800.1:exon:006	exon
Cp4.1LG15g07800.1:exon:005	Cp4.1LG15g07800.1:exon:005	exon
Cp4.1LG15g07800.1:exon:004	Cp4.1LG15g07800.1:exon:004	exon
Cp4.1LG15g07800.1:exon:003	Cp4.1LG15g07800.1:exon:003	exon
Cp4.1LG15g07800.1:exon:002	Cp4.1LG15g07800.1:exon:002	exon
Cp4.1LG15g07800.1:exon:001	Cp4.1LG15g07800.1:exon:001	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g07800.1:three_prime_utr:001	Cp4.1LG15g07800.1:three_prime_utr:001	three_prime_UTR
Cp4.1LG15g07800.1:three_prime_utr:002	Cp4.1LG15g07800.1:three_prime_utr:002	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g07800.1:cds:001	Cp4.1LG15g07800.1:cds:001	CDS
Cp4.1LG15g07800.1:cds:002	Cp4.1LG15g07800.1:cds:002	CDS
Cp4.1LG15g07800.1:cds:003	Cp4.1LG15g07800.1:cds:003	CDS
Cp4.1LG15g07800.1:cds:004	Cp4.1LG15g07800.1:cds:004	CDS
Cp4.1LG15g07800.1:cds:005	Cp4.1LG15g07800.1:cds:005	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g07800.1:five_prime_utr:001	Cp4.1LG15g07800.1:five_prime_utr:001	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g07800.1	Cp4.1LG15g07800.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045037	protein import into chloroplast stroma
biological_process	GO:0045038	protein import into chloroplast thylakoid membrane
biological_process	GO:0010027	thylakoid membrane organization