Cp4.1LG15g04590.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g04590.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	40S ribosomal protein S29
Location	Cp4.1LG15: 5589523 .. 5592947 (-)
Sequence length	500
RNA-Seq Expression	Cp4.1LG15g04590.1
Synteny	Cp4.1LG15g04590.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAACATTTATGAATATATTATACAAATTATGTATTATATTTGGAAATTATATTAAATTATTTTCGGTACACGCTAGGGTTTCGTCTCTGATCGCCGCTATAAATACTTACTTTTCCTACTAACGATCGTTCGTCATAAGGATTTTGCCGCTTCTTGGAATTTTTGAAGCCCTAACGAGCTCAACAGATTTCCATCTCGTAGGCGATCCAATCATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAGCTATGGTCCCGGCTCTCGCACCTGGTAACTTGTTTTCTTGTTCTCTGTTTCTCTTTTGAAATCATTCCGATTTGATTTAGTTGATTTTTTCTTGTCTGCTGCATCCGATTTCTTCTTTTTCTCTAAGAACATGGTTAGTTTTTTGGATTACAGAGTGGAATTCGGGTGTTTTGTTAATCTGATGGTATTTTGACTTGAGAGATGAATTATGTGATTGGTTTTTACTTTTGAGTTGGACACAGTTCAAAGTAGTAATAGTTGGAAACAAGCACAAGGACTGATTTATCTCTATACGTTCGTGCTGAAAAATATTTGTGTCGGCTATAATTTGTGCTATGGTGGGCAATTAAGTGAAGTTATTGTAGAATAGTTACCAAATGTTCTTCTATCTATTTGTACTGTCTGTTAAAATTGATTAGGCATGAGAACTTGTCTCGATTCTGGTTATGTCCACGGTCAAATCATTTTATGTGTAGATTATTCTGGGTCATAGTTTTAATGTTGATGAAACGGTAAGGAGTTCTTAGTATTTGCTCACTTAAGCTGTCTGTGATTGTTGGTTGAACTAGACAGTAAGTACAGTTGGATAATGGGATGAATAAAAGGATAGATAAGATGCTCCATAGGTTTCCATGATTGAGATTTATAAATTTTGGATACATAGATACACTTGGTTGGGTTAACATTTATTTATAACAATGATATGAAGGAAGGGGTTAACATCTAATGTTGGGTTAAAATTTATTCATAACAATGATATGAACTAAACGGTAACAATGACTGAAAGGATTGATAAGATGCTGCATAGGTTCCCATGATTGAGAGTTATAAATTTTGGATAAATAGAAACATTTGATTGGGTTTACATTTATTCAGAACAATGATATGAAGGTCTTTTTTGTTTGAATTAAAATCTGTCTTCTATTTGTCTCGTCTTTTAGCCGGGTATGCGGTAATCCTCATGGGTTGATCAGAAAGTACGGCCTTATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGGTAAAAATTTTACGTTCTTGTTTCTTTTGAACTAAATTCATATCAAGACTTTTTCAATGTCTTCTGACCCTGTTGAACCCCTCAACTCTTCTTGCAGTACCGCTAAATGGTGAAATTTTGCCTCTCCTGCCTCTCCCATTAGAGAATGTTTGATGGATAGAATATGGTTGCTGGATTTGCTTATATAAAAGAAAGAACCTTGAACTTCTTTTCTGTCCCTAGTTCATTATTTCCTTGAACCTCGTGTTGATTGTTGAACTTAGGCTACTACAATGTTTACTGATTTTGAAGATTAAGTTAGTGCGTTTCATTTGTCCGAGTATTCTTGTTTTCCTCTCGTTCCTTCCTTTTTCCCCCCTAATGGTATTGCTTCATAAAATGTGCGGATTAGAGTAGAAATCGAGTTGACCATCATAGTTTGTTTGGTCTAGCGGGAAATGGTCCATCTACCTTAAAGGACTTGGAAGAAATGAATAAGGTTTTGTCCTAACAGTATCACTTTTATATGTACGGATTAAATTAGAAATCGAGTTAAACCATCATGGTTTGGTCTAGCGGAAAAGGGTCTATCAGGCAGAAATGAATTCAAGTCATGGTCACTATCTAGTTAGGTCTATTTAGGATTTAATATCGTATAAGGTTTTGTCCTAATGGTATTACTTTATAAATGTACAGATTAAAGTAGAAATCGAGTTAACCATCATGGTTTGGTCTAGTGGAAAAGGGTCCATCTACTTGAATTTAAGTCATGTCACTATCTATTTAGGATTTAATATCCCATAAGGTATAGCTAATGCATTGACCGAACACGTATGAAGTAAGGACCTAGCCACACTACTACTGATTGGTGTCCCTACTATGATGGTATTTCAAATGGGGTCCTCCCCATTAGGCATTAATGCATGCTAAATTCAGTCTGAAACAGGGTCTGGTCTGAACTTATTAATCATGTTGTTGTTACTGGTAATTTGTGCATAGTTTTTAGTGATCTGTGGACCATTTATCAATTGCTTGGGCTGACCAGGGGACAGTCAACAATCTTGAAGGCTTGAATATTCGCTCTTGGGACACTTTGTAGACCAGGCCCCTTTCCTTTTCCTCATAGCTTTGGTGAAATATTTATTTTTGTCTTGCAAATTTAAATGATTTAATTATGATATCTATAAAAGTTCATTGAATTTAAATAATAATGTAGGTAGAGGTGGATATAGGTTTTGAGATTTTAGTTCAGACACTTTATGAATGAAATACTTTTTTAGCATTAAATTTTCAGGAGGTTAAATGGATTTGTAAGTGAATTTAGGGGCGGGTTGGTTGGTGACTCCGAGCAATTTGAATAGTTATATGCAGTAAGCCGTTGTTGTTGTCGTTTACTTACATTCCCTAATAACACTAATTTCAATTTCTCAAATCTTGCTTTCAAAACTCTTTTTTGAAATCTCTCTGCCCCGTTTTCTAAAACTTTTTTCTTGAACTGGGGCCAAAAGCTCGAGCATACGTCGCTTGGCCGTAGGTGACGTAAGAACGAGTAGGCTTAACTCATTTGTTGTTGAAAAGTGAGTGTCGAAGAATTTCTCGAGAATCCTACAAGATCCATTTGTTCTTTTTTCTCTATGGTTAGAACTTCATATGGGTTTGAATCCTATTGAGAGGTTCACTAGAGATGAGAAATTGTTGAAGAAAGAACAAGATGTTTCTTTTGTCCCTTCCAAGCGGTCGGAAATTAAAGAAATAGTTAATATATTCAAGATTTCATTCTTGAACAAAAATTCATTTCTTTATTTATTTCATATATTCCATGACGGGAACCGGAGGGGATACACGTTACACCACAATTTTGAATCAAGAGAGAGATTTCAATTGCAAGTTCGCTATCATCAAAGAGCGATTGTGACAAGTGGTATGATTTCAAGTGCAAGTTCACTGCCATCAAAGAGCGATTGTGACAAGGGGTATCGTTCATCTCAAATCTTAATTATTTTTTTATAAAAAAAAAATTAATCCACATTTATTGTTACTTTAGTAACTAAAATCTCTGAAGTTTTAAATATAAGTCTAAGATCGGTTGCAAATGTTACATATTCTTAATCTTTTTGAAGGTAGGATTAAGTATGGTTACAACGAACCAGAT

mRNA sequence

TTTAAACATTTATGAATATATTATACAAATTATGTATTATATTTGGAAATTATATTAAATTATTTTCGGTACACGCTAGGGTTTCGTCTCTGATCGCCGCTATAAATACTTACTTTTCCTACTAACGATCGTTCGTCATAAGGATTTTGCCGCTTCTTGGAATTTTTGAAGCCCTAACGAGCTCAACAGATTTCCATCTCGTAGGCGATCCAATCATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAGCTATGGTCCCGGCTCTCGCACCTGCCGGGTATGCGGTAATCCTCATGGGTTGATCAGAAAGTACGGCCTTATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGATTAAAGTAGAAATCGAGTTAACCATCATGGTTTGGTCTAGTGGAAAAGGGTCCATCTACTTGAATTTAAGTCATGTAGAGGTGGATATAGGTAGGATTAAGTATGGTTACAACGAACCAGAT

Coding sequence (CDS)

ATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAGCTATGGTCCCGGCTCTCGCACCTGCCGGGTATGCGGTAATCCTCATGGGTTGATCAGAAAGTACGGCCTTATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGATTAAAGTAGAAATCGAGTTAACCATCATGGTTTGGTCTAGTGGAAAAGGGTCCATCTACTTGAATTTAAGTCATGTAGAGGTGGATATAGGTAGGATTAAGTATGGTTACAACGAACCAGAT

Protein sequence

MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIKVEIELTIMVWSSGKGSIYLNLSHVEVDIGRIKYGYNEPD

Homology

[Close]

BLAST of Cp4.1LG15g04590.1 vs. ExPASy Swiss-Prot
Match: Q680P8 (40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-25
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIK 57
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK +
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of Cp4.1LG15g04590.1 vs. ExPASy Swiss-Prot
Match: Q5I7K3 (40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.1e-25
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIK 57
          MGHSNVWNSHPK+YG GSR CRVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK +
Sbjct: 1  MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKYR 56

[Close]

BLAST of Cp4.1LG15g04590.1 vs. ExPASy Swiss-Prot
Match: Q7XYB0 (40S ribosomal protein S29 OS=Griffithsia japonica OX=83288 GN=RPS29 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.6e-19
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIK 57
          MGH N+W SHP+ YG GSR+C++CGN HGLIRKY +  CRQCFR  AK+IGFIK +
Sbjct: 1  MGHQNIWYSHPRKYGKGSRSCKICGNKHGLIRKYSMNICRQCFREYAKDIGFIKYR 56

[Close]

BLAST of Cp4.1LG15g04590.1 vs. ExPASy Swiss-Prot
Match: Q4PM47 (40S ribosomal protein S29 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-18
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKI 56
          MGH N+W SHP+ YGPGSR CRVC N HGLIRKYGL  CR+CFR  A +IGF K+
Sbjct: 1  MGHENIWYSHPRKYGPGSRYCRVCANHHGLIRKYGLNICRRCFRQYAADIGFKKL 55

[Close]

BLAST of Cp4.1LG15g04590.1 vs. ExPASy Swiss-Prot
Match: Q6F473 (40S ribosomal protein S29 OS=Plutella xylostella OX=51655 GN=RpS29 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.4e-18
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKI 56
          MGH+N+W SHP+ YG GSR+CR C N HGLIRKYGL  CRQCFR  A +IGF K+
Sbjct: 1  MGHANIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKKL 55

[Close]

BLAST of Cp4.1LG15g04590.1 vs. NCBI nr
Match: APR64012.1 (hypothetical protein [Populus tomentosa])

HSP 1 Score: 130 bits (327), Expect = 3.49e-37
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIKVEIE 60
          MGHSN+WNSHPKSYGPGSRTCRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK++ +  
Sbjct: 1  MGHSNIWNSHPKSYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKVRRQKY 60

Query: 61 LTIMVW 66
          L I+V+
Sbjct: 61 LLILVF 66

[Close]

BLAST of Cp4.1LG15g04590.1 vs. NCBI nr
Match: TQE05330.1 (hypothetical protein C1H46_009023 [Malus baccata])

HSP 1 Score: 129 bits (323), Expect = 6.60e-37
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIKVEIE 60
          MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK+K    
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVKASRT 60

Query: 61 LT 62
          L+
Sbjct: 61 LS 62

[Close]

BLAST of Cp4.1LG15g04590.1 vs. NCBI nr
Match: KAG4984403.1 (hypothetical protein JHK87_029152 [Glycine soja] >KAG4998453.1 hypothetical protein JHK85_029892 [Glycine max] >KAG5005219.1 hypothetical protein JHK86_029358 [Glycine max] >KAG5128411.1 hypothetical protein JHK82_029246 [Glycine max] >KAG5153016.1 hypothetical protein JHK84_029488 [Glycine max])

HSP 1 Score: 130 bits (326), Expect = 7.30e-37
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIKVEIE 60
          MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK+ + + 
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVHLNVL 60

Query: 61 LTIMVWSSGKGSIYLNLSHV 80
            I V+   +    L+L  +
Sbjct: 61 FLIFVFELVQFEFTLSLKEL 80

[Close]

BLAST of Cp4.1LG15g04590.1 vs. NCBI nr
Match: KAG6784461.1 (hypothetical protein POTOM_010157 [Populus tomentosa])

HSP 1 Score: 129 bits (324), Expect = 8.64e-37
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIKVEIE 60
          MGHSNVWNSHPK+YGPGSRTCRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK++V+  
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKVRVQKH 60

[Close]

BLAST of Cp4.1LG15g04590.1 vs. NCBI nr
Match: RZB89157.1 (40S ribosomal protein S29 [Glycine soja])

HSP 1 Score: 129 bits (325), Expect = 1.04e-36
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIKVEIE 60
          MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK+ + + 
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVHLNVL 60

Query: 61 LTIMVW 66
            I V+
Sbjct: 61 FLIFVF 66

[Close]

BLAST of Cp4.1LG15g04590.1 vs. ExPASy TrEMBL
Match: A0A1L6K5A9 (Uncharacterized protein OS=Populus tomentosa OX=118781 PE=2 SV=1)

HSP 1 Score: 130 bits (327), Expect = 1.69e-37
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIKVEIE 60
          MGHSN+WNSHPKSYGPGSRTCRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK++ +  
Sbjct: 1  MGHSNIWNSHPKSYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKVRRQKY 60

Query: 61 LTIMVW 66
          L I+V+
Sbjct: 61 LLILVF 66

[Close]

BLAST of Cp4.1LG15g04590.1 vs. ExPASy TrEMBL
Match: A0A540N498 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_009023 PE=3 SV=1)

HSP 1 Score: 129 bits (323), Expect = 3.20e-37
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIKVEIE 60
          MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK+K    
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVKASRT 60

Query: 61 LT 62
          L+
Sbjct: 61 LS 62

[Close]

BLAST of Cp4.1LG15g04590.1 vs. ExPASy TrEMBL
Match: A0A0R0I6D2 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_10G258500 PE=3 SV=1)

HSP 1 Score: 130 bits (326), Expect = 3.53e-37
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIKVEIE 60
          MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK+ + + 
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVHLNVL 60

Query: 61 LTIMVWSSGKGSIYLNLSHV 80
            I V+   +    L+L  +
Sbjct: 61 FLIFVFELVQFEFTLSLKEL 80

[Close]

BLAST of Cp4.1LG15g04590.1 vs. ExPASy TrEMBL
Match: A0A445ISV5 (40S ribosomal protein S29 OS=Glycine soja OX=3848 GN=D0Y65_028154 PE=3 SV=1)

HSP 1 Score: 129 bits (325), Expect = 5.02e-37
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIKVEIE 60
          MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK+ + + 
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVHLNVL 60

Query: 61 LTIMVW 66
            I V+
Sbjct: 61 FLIFVF 66

[Close]

BLAST of Cp4.1LG15g04590.1 vs. ExPASy TrEMBL
Match: A0A7J6V9W7 (40s ribosomal protein s29 OS=Thalictrum thalictroides OX=46969 GN=FRX31_029241 PE=3 SV=1)

HSP 1 Score: 128 bits (322), Expect = 7.30e-37
Identity = 56/80 (70.00%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIKVEIE 60
          MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK++    
Sbjct: 1  MGHSNVWNSHPKTYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVRFTFH 60

Query: 61 LTIMVWSSGKGSIYLNLSHV 80
            +++    +  + L +S V
Sbjct: 61 CKLLLQYDLQTGLVLFISFV 80

[Close]

BLAST of Cp4.1LG15g04590.1 vs. TAIR 10
Match: AT3G43980.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 117.1 bits (292), Expect = 7.8e-27
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIK 57
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK +
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of Cp4.1LG15g04590.1 vs. TAIR 10
Match: AT3G44010.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 117.1 bits (292), Expect = 7.8e-27
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIK 57
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK +
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of Cp4.1LG15g04590.1 vs. TAIR 10
Match: AT4G33865.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 117.1 bits (292), Expect = 7.8e-27
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKIK 57
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK +
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g04590.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q680P8	1.1e-25	89.29	40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2	[more]
Q5I7K3	7.1e-25	85.71	40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1	[more]
Q7XYB0	7.6e-19	66.07	40S ribosomal protein S29 OS=Griffithsia japonica OX=83288 GN=RPS29 PE=3 SV=1	[more]
Q4PM47	3.8e-18	69.09	40S ribosomal protein S29 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1	[more]
Q6F473	8.4e-18	67.27	40S ribosomal protein S29 OS=Plutella xylostella OX=51655 GN=RpS29 PE=3 SV=1	[more]

BLAST of Cp4.1LG15g04590.1 vs. NCBI nr


Match Name	E-value	Identity	Description
APR64012.1	3.49e-37	83.33	hypothetical protein [Populus tomentosa]	[more]
TQE05330.1	6.60e-37	88.71	hypothetical protein C1H46_009023 [Malus baccata]	[more]
KAG4984403.1	7.30e-37	71.25	hypothetical protein JHK87_029152 [Glycine soja] >KAG4998453.1 hypothetical prot...	[more]
KAG6784461.1	8.64e-37	88.52	hypothetical protein POTOM_010157 [Populus tomentosa]	[more]
RZB89157.1	1.04e-36	83.33	40S ribosomal protein S29 [Glycine soja]	[more]

BLAST of Cp4.1LG15g04590.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1L6K5A9	1.69e-37	83.33	Uncharacterized protein OS=Populus tomentosa OX=118781 PE=2 SV=1	[more]
A0A540N498	3.20e-37	88.71	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_009023 PE=3 SV=1	[more]
A0A0R0I6D2	3.53e-37	71.25	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_10G258500 PE=3 SV=1	[more]
A0A445ISV5	5.02e-37	83.33	40S ribosomal protein S29 OS=Glycine soja OX=3848 GN=D0Y65_028154 PE=3 SV=1	[more]
A0A7J6V9W7	7.30e-37	70.00	40s ribosomal protein s29 OS=Thalictrum thalictroides OX=46969 GN=FRX31_029241 P...	[more]

BLAST of Cp4.1LG15g04590.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G43980.1	7.8e-27	89.29	Ribosomal protein S14p/S29e family protein	[more]
AT3G44010.1	7.8e-27	89.29	Ribosomal protein S14p/S29e family protein	[more]
AT4G33865.1	7.8e-27	89.29	Ribosomal protein S14p/S29e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001209	Ribosomal protein S14	PFAM	PF00253	Ribosomal_S14	coord: 7..54 e-value: 2.9E-16 score: 58.9
IPR043140	Ribosomal protein S14/S29	GENE3D	4.10.830.10	30s Ribosomal Protein S14; Chain N	coord: 1..56 e-value: 3.0E-34 score: 118.7
IPR039744	40S ribosomal protein S29/30S ribosomal protein S14 type Z	PANTHER	PTHR12010	40S RIBOSOMAL PROTEIN S29	coord: 1..54
None	No IPR available	PANTHER	PTHR12010:SF14	40S RIBOSOMAL PROTEIN S29	coord: 1..54
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 11..48
IPR023676	Ribosomal protein S14, type Z, archaeal	HAMAP	MF_01364_A	Ribosomal_S14_2_A	coord: 2..57 score: 15.595109

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG15g04590	Cp4.1LG15g04590	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g04590.1:exon:005	Cp4.1LG15g04590.1:exon:005	exon
Cp4.1LG15g04590.1:exon:004	Cp4.1LG15g04590.1:exon:004	exon
Cp4.1LG15g04590.1:exon:003	Cp4.1LG15g04590.1:exon:003	exon
Cp4.1LG15g04590.1:exon:002	Cp4.1LG15g04590.1:exon:002	exon
Cp4.1LG15g04590.1:exon:001	Cp4.1LG15g04590.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g04590.1:cds:001	Cp4.1LG15g04590.1:cds:001	CDS
Cp4.1LG15g04590.1:cds:002	Cp4.1LG15g04590.1:cds:002	CDS
Cp4.1LG15g04590.1:cds:003	Cp4.1LG15g04590.1:cds:003	CDS
Cp4.1LG15g04590.1:cds:004	Cp4.1LG15g04590.1:cds:004	CDS
Cp4.1LG15g04590.1:cds:005	Cp4.1LG15g04590.1:cds:005	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g04590.1:five_prime_utr:001	Cp4.1LG15g04590.1:five_prime_utr:001	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g04590.1	Cp4.1LG15g04590.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008270	zinc ion binding