Cp4.1LG14g05290.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g05290.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG14: 1154633 .. 1154839 (+)
Sequence length	207
RNA-Seq Expression	Cp4.1LG14g05290.1
Synteny	Cp4.1LG14g05290.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACGGCCAGGCGCAGTACCCAGGGCACTGAGATTCCGAGTTCCCAACCCACACATAAGCGGTTCGTGCGCTTCTCCGACCCACCGGAACCGACCCATGAGTACCGCACCGGCTGCGGCAGAATCCATCCACGGCAACATCCTTCGCCGTCAGCACCACGTTTACCGAATTCAACTGATTGACCTTGGTCGCCAACGCCCTTAG

mRNA sequence

ATGGAACGGCCAGGCGCAGTACCCAGGGCACTGAGATTCCGAGTTCCCAACCCACACATAAGCGGTTCGTGCGCTTCTCCGACCCACCGGAACCGACCCATGAGTACCGCACCGGCTGCGGCAGAATCCATCCACGGCAACATCCTTCGCCGTCAGCACCACGTTTACCGAATTCAACTGATTGACCTTGGTCGCCAACGCCCTTAG

Coding sequence (CDS)

ATGGAACGGCCAGGCGCAGTACCCAGGGCACTGAGATTCCGAGTTCCCAACCCACACATAAGCGGTTCGTGCGCTTCTCCGACCCACCGGAACCGACCCATGAGTACCGCACCGGCTGCGGCAGAATCCATCCACGGCAACATCCTTCGCCGTCAGCACCACGTTTACCGAATTCAACTGATTGACCTTGGTCGCCAACGCCCTTAG

Protein sequence

MERPGAVPRALRFRVPNPHISGSCASPTHRNRPMSTAPAAAESIHGNILRRQHHVYRIQLIDLGRQRP

Homology

[Close]

BLAST of Cp4.1LG14g05290.1 vs. NCBI nr
Match: RLN11920.1 (hypothetical protein C2845_PM09G08830 [Panicum miliaceum])

HSP 1 Score: 49.3 bits (116), Expect = 1.20e-04
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   MERPGAVPRALRFRVPNPHISGSCASPTHRNRPMSTAPAAAESIHGNILRRQHH--VYRI 60
           +ERP A+PRALR RV +P +  + A+   R  P+  APA AE++H ++LRR+H     R+
Sbjct: 133 VERPRALPRALRGRVAHPRVRRAGAAAAER--PVVPAPARAEALHRHVLRREHQRDAARL 192

Query: 61  QLIDLGRQR 67
           +    GR+R
Sbjct: 193 RGARRGRER 199

[Close]

BLAST of Cp4.1LG14g05290.1 vs. ExPASy TrEMBL
Match: A0A3L6RYU9 (Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PM09G08830 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.80e-05
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   MERPGAVPRALRFRVPNPHISGSCASPTHRNRPMSTAPAAAESIHGNILRRQHH--VYRI 60
           +ERP A+PRALR RV +P +  + A+   R  P+  APA AE++H ++LRR+H     R+
Sbjct: 133 VERPRALPRALRGRVAHPRVRRAGAAAAER--PVVPAPARAEALHRHVLRREHQRDAARL 192

Query: 61  QLIDLGRQR 67
           +    GR+R
Sbjct: 193 RGARRGRER 199

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g05290.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g05290.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RLN11920.1	1.20e-04	42.03	hypothetical protein C2845_PM09G08830 [Panicum miliaceum]	[more]

BLAST of Cp4.1LG14g05290.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3L6RYU9	5.80e-05	42.03	Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PM09G08830 PE=4 SV...	[more]

BLAST of Cp4.1LG14g05290.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..40

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG14g05290	Cp4.1LG14g05290	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG14g05290.1:exon:001	Cp4.1LG14g05290.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG14g05290.1:cds:001	Cp4.1LG14g05290.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG14g05290.1	Cp4.1LG14g05290.1-protein	polypeptide