Cp4.1LG11g06210.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGCCTCCCTAGGGTTTCAACTGCTTCAATGGTGCTTCTTCTTCCCCGACATTTCTACTTCTCTCTCTTTCCAATTACCTTGCCGCCATTGCAGAGCTGATTCAATTGCCGTTTCCATTTTTATTATTATTATGAACAAAGGCATTGGTGGTGGAACTGGCCCCACCGCTGCGGCTGCTGCGGCGGCAGCTCAGAAACAGAAACTGCTTCTTCAGAGAGTCGAAACCGATATAGCCAACATTGTCGACAATTTCACCCATCTTGTCAACGTCTCAAGGGTAACGCTCCTCTTTCCTTTTCTTTTTTGCTTTTGCTTCATTGTTTTCTCAACTCAATTCTTCTTCTACGACTTGGAATAGGAAATTTGTCATGTAATTCTCTTTGGTTGGTTGTTTTCCTGTTCTTGATTGAACGATCCCTTGTTTGGAATCCATAATTCGAACTTAGCGTTCTCGTTTCCTTAGGTGAACGATCCACCTGTTAGGAATTCACAGGAATCTTTCATGATGGAAATGCGTGCGTCCAGAATGGTAAGATAATGATTCTTCCTTTTTTTGTTTACCTACTGTTTTTGCCAAGCTTATTTTAAGTTAATTTCTGGATAGATAGCTCTCTGTTTCCTTCCTCAATTGAATGATAATCATCTTATATGTTATTTGAAGCCTTGATTCCTAGGGAGTTACTGATTTTTCAATAAAATCAGATGCTTCTGCATCTCTTCTAGTATGTATTTCTTCTCCTTCACCAGCAATTCCGAGCAAATTCTCTTCTTTAATTAACGTCTATGGTCTTCAAATTCGTAACCCTCCGGCGCTACCAATTGGTTCTTCACATAAATTTACTTGAGTTACCTTTTTAGCTTGAGCAGTGAAAGTTATCTCGTGGAATACTAGAGGCCTTGGGGATCGTTCTAAAAGAACAACATTGAAAAACTCATTCAATGTCACTGTCTTGATATGGTGTTAGTTCATGAGACAAAGATTGCTTTCTTTCTTTTTTTTTCTTTTTACTGAAAAGTTATCAAATCTTTATGGTGCTCCAAAGAAATTGGTTGGATTAATGTTGGATCTATTGAGACATCAGGTGGTTTACTGACTTTGCGGGATACTAGTAAGATAAATGTGAGATCCCACATCGGTTGGGGAGGAGAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGATGTGTTTTAAAAACCATGAGGGAAATCTCGGAAGAGAAAGCCCAAAGAGGACAATATCTGCTAGTGTGGGCTTGGGCCGTTACAACAAAAATCTTGGAGTTTCTTAAAGGAGGCTCCACCCTCTCAATTGAAATATTTTTCCAGAACAAGTGAATTTGTTGGGAAACACACATTTGTCTTCGGAATGAATGCGGTCTTTATTCTCTCATACTGTGAAGGAGCCTTGGTGCATTGGTGGCAATTTTTACATAACTCGTTGGGTTCATGAAAGATCACCATTAGGATGAAAAGCCAAAAGTTGGGAGATAATTCATAGCACTCTTTGATCAATAGCTTTTTTTGTTTCGTAGGAATAAGAATAATTATTTGATGATTCAACAGTATAATGACAAGCTCAGATTTTTTTATTGAGCTCTATCCTTTACTCTCTGAAGCTGGACGTTTTGTTTGGGTCTTATCCCACTTTAGATTTTAAATCAGTTGGCTACAAATATCAGTTTGTGAGGTCATCATCAGGGAAGCTCTTTCCATAGATTTTCGTGTTGATGCCTTTGTGGAATTCAGTTGTTTAGATCTTTTTTGGTGAAAGAATTTTGGCCAGCTTTTATTAGTATTGGCTCTTGTTGTCAGCTGTTGCTTTTCGAGGTTTCTCAGCAGTCGAATTTGGTTTGATGGGTCTTGTTTCGTTTCTTGACAATTCTCATTTGATTGTAATTGTTTTAAAATCTTGTTCAATTTTTTCTTTCATTCCCACATAAGATTTTAGGCAATAATAAATTTGGGATCTGTTCTTTTTTGTTCTTATCAGCTCGATATAGATGATAGCATTTCATTATAATCATAATGGCTACTAATTTAGAGTTTTTTACTTGTTTCTAAACAGGTTCAGGCAGCTGATTCTCTGCTTAAGTTGGTTTCAGAACTTAAGCAGACAGCAATCTTTTCTGGATTTGCTTCACTAAACGACCACGTGGAGCAAAGAATCGTGGAATTCAATCAGCAGGCGGAGCAGACCGACCGTGTCCTATCTAAAATTGGTGAAGAAGCTGCCGTAGGGCTTAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGGACTAGTCAGAACAGCCTGACATGATTTGTAAGTAGTGAATGTAAATAAGGATGTGATATTGTTGGCTTCTGAACTCAATTTCTCGCTAACATGGATAGTAAAACATAACCGAACTCTTCTAGCCTATGTTCTTAGCATTTTTCTTTGGCTTTTATTGTTTTGGCATGCTAGATATGCAGGAACTAGCAGAAGGGTTTGGTGTCTTTTCTTACTCAGCTTTTTAGAAGAGTAATTAGGATGGGGAAGAAGGGCTTGACAAGGATGTAAAACATTATTTGGGAAATATGAACAATCAGAATATTATTGTTCAAACTAATGTTATGGCTGAGGACTATGGTGGCAAAAATGGCCGAGCTTGTAGAAGCTCAAAATAACAAATAAAAACTCATAGATTCATTGATGAATGTCCCAAATATTACTTAAACCTTGGGTACGTGAGGAAACATATTATTATTGTAACCGTCCAAGTCTACTACTTCTAGATATTGTTCGATTTAGTTTGTTACATGTCACTGTCAGCTTCACAATTTTAAAACGTGTCTGCTAAGTAGAAGTTTTTATATTTTTATAAGGAGAAACTTCAATTGATTTTGGATTTCACAATCTACCCCCTTGGGGGTTCAATGTTCTTGTTTGCACATCGTCCAATGTCTGGCTTTGATGCCATTTGTAACTGCCTAAGCCCACCGTTAGTAGATATTGTTCGCTTTGGTTTCTTATGTATTATCATCAGCCTCACGGTTTTAAAACGTGTCTATTAGGTTGAGTTTTTCACATCTTTATAAAGAATATTTCATTCCCATTTTCAAGGTTGATCTCACAATTATACCTCTTTATAAATATAAGATTTCATAAGAAGAATCCTTCCTATTGGACTAAAATCGTTGGAAATGGTCTAGAATCAGGACTCTGATAACTATTACTTTTTTTTATTTTTTTTTGAACTTTATACGGTTAATTTTGTTTTCGTCATAACAGGTTGTCTAGCAGCCATTCCAGCTGCATTGCTAGTTCAGTCTCCACCAATGGTTTCATCACTTAGCTCTGGTGGTCTTAGTGAGGGCAATCTCCATGTGCCCTAATCTTCTCCATCCTCGTAGCATTAAAATGTGTTAATGTTGGAAAATTGAGATTGTGTAAAGTCATATGTTGTGATATGATGAAGATATTGATGATGAAGAGAATTTTTTGAGAATAAATTTTTGGATTGACCGGACCCGTCTTCAAGTATGAACATTGTTAGACTGTGAAGTATGATGTTTAACTATTTGAGTTAAATGAGTAATGAGTTT AGCCTCCCTAGGGTTTCAACTGCTTCAATGGTGCTTCTTCTTCCCCGACATTTCTACTTCTCTCTCTTTCCAATTACCTTGCCGCCATTGCAGAGCTGATTCAATTGCCGTTTCCATTTTTATTATTATTATGAACAAAGGCATTGGTGGTGGAACTGGCCCCACCGCTGCGGCTGCTGCGGCGGCAGCTCAGAAACAGAAACTGCTTCTTCAGAGAGTCGAAACCGATATAGCCAACATTGTCGACAATTTCACCCATCTTGTCAACGTCTCAAGGGTGAACGATCCACCTGTTAGGAATTCACAGGAATCTTTCATGATGGAAATGCGTGCGTCCAGAATGGTTCAGGCAGCTGATTCTCTGCTTAAGTTGGTTTCAGAACTTAAGCAGACAGCAATCTTTTCTGGATTTGCTTCACTAAACGACCACGTGGAGCAAAGAATCGTGGAATTCAATCAGCAGGCGGAGCAGACCGACCGTGTCCTATCTAAAATTGGTGAAGAAGCTGCCGTAGGGCTTAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGGACTAGTCAGAACAGCCTGACATGATTTGTTGTCTAGCAGCCATTCCAGCTGCATTGCTAGTTCAGTCTCCACCAATGGTTTCATCACTTAGCTCTGGTGGTCTTAGTGAGGGCAATCTCCATGTGCCCTAATCTTCTCCATCCTCGTAGCATTAAAATGTGTTAATGTTGGAAAATTGAGATTGTGTAAAGTCATATGTTGTGATATGATGAAGATATTGATGATGAAGAGAATTTTTTGAGAATAAATTTTTGGATTGACCGGACCCGTCTTCAAGTATGAACATTGTTAGACTGTGAAGTATGATGTTTAACTATTTGAGTTAAATGAGTAATGAGTTT ATGAACAAAGGCATTGGTGGTGGAACTGGCCCCACCGCTGCGGCTGCTGCGGCGGCAGCTCAGAAACAGAAACTGCTTCTTCAGAGAGTCGAAACCGATATAGCCAACATTGTCGACAATTTCACCCATCTTGTCAACGTCTCAAGGGTGAACGATCCACCTGTTAGGAATTCACAGGAATCTTTCATGATGGAAATGCGTGCGTCCAGAATGGTTCAGGCAGCTGATTCTCTGCTTAAGTTGGTTTCAGAACTTAAGCAGACAGCAATCTTTTCTGGATTTGCTTCACTAAACGACCACGTGGAGCAAAGAATCGTGGAATTCAATCAGCAGGCGGAGCAGACCGACCGTGTCCTATCTAAAATTGGTGAAGAAGCTGCCGTAGGGCTTAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGGACTAGTCAGAACAGCCTGACATGA MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRVLSKIGEEAAVGLKELESHYYSSTQRTSQNSLT Homology
BLAST of Cp4.1LG11g06210.1 vs. ExPASy Swiss-Prot
Match: Q8LCH5 (Mediator of RNA polymerase II transcription subunit 22b OS=Arabidopsis thaliana OX=3702 GN=MED22B PE=1 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 3.6e-55 Identity = 112/140 (80.00%), Postives = 130/140 (92.86%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. ExPASy Swiss-Prot
Match: Q9SA42 (Mediator of RNA polymerase II transcription subunit 22a OS=Arabidopsis thaliana OX=3702 GN=MED22A PE=1 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 5.2e-54 Identity = 110/147 (74.83%), Postives = 134/147 (91.16%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. ExPASy Swiss-Prot
Match: Q54XB0 (Putative mediator of RNA polymerase II transcription subunit 22 OS=Dictyostelium discoideum OX=44689 GN=med22 PE=3 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 2.8e-15 Identity = 45/143 (31.47%), Postives = 88/143 (61.54%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. ExPASy Swiss-Prot
Match: Q62276 (Mediator of RNA polymerase II transcription subunit 22 OS=Mus musculus OX=10090 GN=Med22 PE=1 SV=2) HSP 1 Score: 83.2 bits (204), Expect = 2.8e-15 Identity = 49/137 (35.77%), Postives = 83/137 (60.58%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. ExPASy Swiss-Prot
Match: A0JPN6 (Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus OX=10116 GN=Med22 PE=2 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 2.8e-15 Identity = 49/137 (35.77%), Postives = 83/137 (60.58%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. NCBI nr
Match: XP_023545554.1 (mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo subsp. pepo] >XP_023545555.1 mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo subsp. pepo] >XP_023545556.1 mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 279 bits (713), Expect = 3.15e-94 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. NCBI nr
Match: KAG7029838.1 (Mediator of RNA polymerase II transcription subunit 22b [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 278 bits (712), Expect = 4.48e-94 Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. NCBI nr
Match: XP_022929626.1 (mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita moschata] >XP_022929627.1 mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita moschata] >XP_022929628.1 mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita moschata]) HSP 1 Score: 276 bits (705), Expect = 5.23e-93 Identity = 147/150 (98.00%), Postives = 149/150 (99.33%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. NCBI nr
Match: XP_022996928.1 (mediator of RNA polymerase II transcription subunit 22b-like isoform X1 [Cucurbita maxima] >XP_022996929.1 mediator of RNA polymerase II transcription subunit 22b-like isoform X1 [Cucurbita maxima] >XP_022996930.1 mediator of RNA polymerase II transcription subunit 22b-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 273 bits (697), Expect = 8.68e-92 Identity = 146/150 (97.33%), Postives = 147/150 (98.00%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. NCBI nr
Match: XP_004145443.1 (mediator of RNA polymerase II transcription subunit 22b [Cucumis sativus] >KGN66872.1 hypothetical protein Csa_007213 [Cucumis sativus]) HSP 1 Score: 269 bits (687), Expect = 2.91e-90 Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. ExPASy TrEMBL
Match: A0A6J1EN95 (mediator of RNA polymerase II transcription subunit 22b-like OS=Cucurbita moschata OX=3662 GN=LOC111436153 PE=4 SV=1) HSP 1 Score: 276 bits (705), Expect = 2.53e-93 Identity = 147/150 (98.00%), Postives = 149/150 (99.33%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. ExPASy TrEMBL
Match: A0A6J1K851 (mediator of RNA polymerase II transcription subunit 22b-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492015 PE=4 SV=1) HSP 1 Score: 273 bits (697), Expect = 4.20e-92 Identity = 146/150 (97.33%), Postives = 147/150 (98.00%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. ExPASy TrEMBL
Match: A0A0A0M174 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701970 PE=4 SV=1) HSP 1 Score: 269 bits (687), Expect = 1.41e-90 Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. ExPASy TrEMBL
Match: A0A1S3C993 (mediator of RNA polymerase II transcription subunit 22b-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498265 PE=4 SV=1) HSP 1 Score: 266 bits (680), Expect = 1.64e-89 Identity = 141/150 (94.00%), Postives = 147/150 (98.00%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. ExPASy TrEMBL
Match: A0A6J1DR20 (mediator of RNA polymerase II transcription subunit 22b-like OS=Momordica charantia OX=3673 GN=LOC111022360 PE=4 SV=1) HSP 1 Score: 266 bits (679), Expect = 2.33e-89 Identity = 141/150 (94.00%), Postives = 146/150 (97.33%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. TAIR 10
Match: AT1G07950.1 (Surfeit locus protein 5 subunit 22 of Mediator complex ) HSP 1 Score: 215.7 bits (548), Expect = 2.5e-56 Identity = 112/140 (80.00%), Postives = 130/140 (92.86%), Query Frame = 0
BLAST of Cp4.1LG11g06210.1 vs. TAIR 10
Match: AT1G16430.1 (Surfeit locus protein 5 subunit 22 of Mediator complex ) HSP 1 Score: 211.8 bits (538), Expect = 3.7e-55 Identity = 110/147 (74.83%), Postives = 134/147 (91.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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