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Cp4.1LG09g11320.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCAGACTGATCGGAGAGATTGGCAGCGTTAATGGAAGTTTTCGCCTCTCCGGTGACATTTCTTGCCTCTTCTTGGCGGCTCTGTTTACACTCTGTATTATCTCCCTTATAACTTTCTCTTGCTCCGATGGCATCTCAAAGGAGAGGAATTCCACGGCAGACGTTGAGCTGTACGGCGGCGGTTGCGCCGCCGGGTGTGGTGCTTGA ATGGCCAGACTGATCGGAGAGATTGGCAGCGTTAATGGAAGTTTTCGCCTCTCCGGTGACATTTCTTGCCTCTTCTTGGCGGCTCTGTTTACACTCTGTATTATCTCCCTTATAACTTTCTCTTGCTCCGATGGCATCTCAAAGGAGAGGAATTCCACGGCAGACGTTGAGCTGTACGGCGGCGGTTGCGCCGCCGGGTGTGGTGCTTGA ATGGCCAGACTGATCGGAGAGATTGGCAGCGTTAATGGAAGTTTTCGCCTCTCCGGTGACATTTCTTGCCTCTTCTTGGCGGCTCTGTTTACACTCTGTATTATCTCCCTTATAACTTTCTCTTGCTCCGATGGCATCTCAAAGGAGAGGAATTCCACGGCAGACGTTGAGCTGTACGGCGGCGGTTGCGCCGCCGGGTGTGGTGCTTGA MARLIGEIGSVNGSFRLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYGGGCAAGCGA Homology
BLAST of Cp4.1LG09g11320.1 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 134 bits (337), Expect = 1.94e-39 Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0
BLAST of Cp4.1LG09g11320.1 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 105 bits (261), Expect = 8.85e-28 Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0
BLAST of Cp4.1LG09g11320.1 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus]) HSP 1 Score: 99.0 bits (245), Expect = 5.34e-25 Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 0
BLAST of Cp4.1LG09g11320.1 vs. NCBI nr
Match: PON38946.1 (hypothetical protein PanWU01x14_308610 [Parasponia andersonii]) HSP 1 Score: 77.8 bits (190), Expect = 6.08e-17 Identity = 41/71 (57.75%), Postives = 46/71 (64.79%), Query Frame = 0
BLAST of Cp4.1LG09g11320.1 vs. NCBI nr
Match: KAF3438595.1 (hypothetical protein FNV43_RR21358 [Rhamnella rubrinervis]) HSP 1 Score: 77.0 bits (188), Expect = 1.13e-16 Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0
BLAST of Cp4.1LG09g11320.1 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 1.18e-25 Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 0
BLAST of Cp4.1LG09g11320.1 vs. ExPASy TrEMBL
Match: A0A2P5AQX4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 2.94e-17 Identity = 41/71 (57.75%), Postives = 46/71 (64.79%), Query Frame = 0
BLAST of Cp4.1LG09g11320.1 vs. ExPASy TrEMBL
Match: A0A6P3ZT85 (uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC107418606 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.49e-16 Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0
BLAST of Cp4.1LG09g11320.1 vs. ExPASy TrEMBL
Match: A0A803R005 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.66e-16 Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 0
BLAST of Cp4.1LG09g11320.1 vs. ExPASy TrEMBL
Match: A0A803R004 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.66e-16 Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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