Cp4.1LG09g06590.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g06590.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Acyl-CoA--sterol O-acyltransferase 1-like
Location	Cp4.1LG09: 5168839 .. 5169144 (-)
Sequence length	306
RNA-Seq Expression	Cp4.1LG09g06590.1
Synteny	Cp4.1LG09g06590.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATATCATTACGCTTTCACTCAGCAATCACCGCAGCGGTGATTCTTATGACGGCCATCTGCCTGACTTCCCCTTGCCCGGCCGACGCCAAGCAGTGCGGGGACTGCATCAGGGACAGGATGGCGCTGCACTGCCCAGCCTGCGCACCGCCTCTGCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGGTTCAAGGTGGAGGTGCGTTAAGCAGTGCGACGGCGGAGGTCAATGGGCGAGGCTGTCCACTTGTAAGCGTTGCATGTGGAGTTGCAAGTGCAGTTGTACCTCTTCTTCTTCTTAG

mRNA sequence

ATGGAGATATCATTACGCTTTCACTCAGCAATCACCGCAGCGGTGATTCTTATGACGGCCATCTGCCTGACTTCCCCTTGCCCGGCCGACGCCAAGCAGTGCGGGGACTGCATCAGGGACAGGATGGCGCTGCACTGCCCAGCCTGCGCACCGCCTCTGCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGGTTCAAGGTGGAGGTGCGTTAAGCAGTGCGACGGCGGAGGTCAATGGGCGAGGCTGTCCACTTGTAAGCGTTGCATGTGGAGTTGCAAGTGCAGTTGTACCTCTTCTTCTTCTTAG

Coding sequence (CDS)

ATGGAGATATCATTACGCTTTCACTCAGCAATCACCGCAGCGGTGATTCTTATGACGGCCATCTGCCTGACTTCCCCTTGCCCGGCCGACGCCAAGCAGTGCGGGGACTGCATCAGGGACAGGATGGCGCTGCACTGCCCAGCCTGCGCACCGCCTCTGCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGGTTCAAGGTGGAGGTGCGTTAAGCAGTGCGACGGCGGAGGTCAATGGGCGAGGCTGTCCACTTGTAAGCGTTGCATGTGGAGTTGCAAGTGCAGTTGTACCTCTTCTTCTTCTTAG

Protein sequence

MEISLRFHSAITAAVILMTAICLTSPCPADAKQCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRWRCVKQCDGGGQWARLSTCKRCMWSCKCSCTSSSS

Homology

[Close]

BLAST of Cp4.1LG09g06590.1 vs. NCBI nr
Match: KAG6573550.1 (hypothetical protein SDJN03_27437, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199 bits (507), Expect = 2.20e-64
Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 0


Query: 1   MEISLRFHSAITAAVILMTAICLTSPCPADAKQCGDCIRDRMALHCPACAPPLRCMAQCL 60
           M+ISLRF+SAITAAVILMTAICLTSPCPADAK CGDCIRDRMALHCPACAPPLRCMAQCL
Sbjct: 1   MDISLRFYSAITAAVILMTAICLTSPCPADAKLCGDCIRDRMALHCPACAPPLRCMAQCL 60

Query: 61  WGGGSRWRCVKQCDGGGQWARLSTCKRCMWSCKCSCTSSSS 101
           WGGGSR RCVKQCD GG WARL +CKRCMWSCKCSCTSSSS
Sbjct: 61  WGGGSRSRCVKQCDSGGAWARLWSCKRCMWSCKCSCTSSSS 101

[Close]

BLAST of Cp4.1LG09g06590.1 vs. NCBI nr
Match: KAG6573554.1 (hypothetical protein SDJN03_27441, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197 bits (501), Expect = 1.81e-63
Identity = 92/101 (91.09%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MEISLRFHSAITAAVILMTAICLTSPCPADAKQCGDCIRDRMALHCPACAPPLRCMAQCL 60
           M+ISLRFHSAITA VILMT ICLTSPC ADAK CGDCIRDRMALHCPACAPPLRCMAQCL
Sbjct: 1   MDISLRFHSAITATVILMTGICLTSPCLADAKLCGDCIRDRMALHCPACAPPLRCMAQCL 60

Query: 61  WGGGSRWRCVKQCDGGGQWARLSTCKRCMWSCKCSCTSSSS 101
           WGGGSR RCVKQCDGGG WARL +CKRCMWSCKCSCTSSSS
Sbjct: 61  WGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS 101

[Close]

BLAST of Cp4.1LG09g06590.1 vs. NCBI nr
Match: KAG7012656.1 (hypothetical protein SDJN02_25409, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186 bits (471), Expect = 2.70e-58
Identity = 85/94 (90.43%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 8   HSAITAAVILMTAICLTSPCPADAKQCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRW 67
            + ITAAVILMTAICLTSPCP DAK CGDCIRDRMALHCPACAPPLRCMAQCLWGGGSR 
Sbjct: 51  ENTITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRS 110

Query: 68  RCVKQCDGGGQWARLSTCKRCMWSCKCSCTSSSS 101
           RCVKQCDGGG WARL +CKRCMWSCKCSCTSSSS
Sbjct: 111 RCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS 144

[Close]

BLAST of Cp4.1LG09g06590.1 vs. NCBI nr
Match: KAF7120202.1 (hypothetical protein RHSIM_Rhsim13G0146200 [Rhododendron simsii])

HSP 1 Score: 99.8 bits (247), Expect = 1.00e-24
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 1   MEISLRFHSAITAAVILM--TAICLTSP---CPADAKQCGDCIRDRMALHCPACAPPLRC 60
           ME  ++  S  TA  IL+  T   ++SP   C +D+ QC +CI DR    CP C P LRC
Sbjct: 1   MEEKMKHSSTTTALFILLLITVWIMSSPVLGCASDSSQCRNCILDRFKYDCPPCVPILRC 60

Query: 61  MAQCLWGGGSRWRCVKQCDGGGQWARLSTCKRCMWSCKCSC 96
           M++CLWGG +R +CVK+CD    + RLS CK+CM  CKCSC
Sbjct: 61  MSRCLWGGSARAKCVKKCDCNSGYPRLSDCKKCMSECKCSC 101

[Close]

BLAST of Cp4.1LG09g06590.1 vs. NCBI nr
Match: KAG9144894.1 (hypothetical protein Leryth_021302 [Lithospermum erythrorhizon])

HSP 1 Score: 99.4 bits (246), Expect = 1.23e-24
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 11  ITAAVILMTAICLTSPCPADAKQCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRWRCV 70
           I   +IL+  +  T  CP+D K C  CI ++M  +CP C P +RCMA CLWGG  +++C+
Sbjct: 10  IMCLLILLQMLLSTQGCPSDGKGCSSCITNQMKNNCPGCVPIMRCMATCLWGGNDKFKCI 69

Query: 71  KQCDGGGQWARLSTCKRCMWSCKCSCTSSS 100
           K+CD  G + R   CK+C+  CKCSCT SS
Sbjct: 70  KKCDCNGGYPRPEDCKKCLAKCKCSCTRSS 99

[Close]

BLAST of Cp4.1LG09g06590.1 vs. ExPASy TrEMBL
Match: A0A0A0LW71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G186620 PE=4 SV=1)

HSP 1 Score: 134 bits (337), Expect = 1.01e-38
Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 11  ITAAVILMTAICLTSPCPADAKQCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRWRCV 70
           IT  VILMTA+ LT  CPA+ K C DCIR+RM   CPACAPPLRCMAQCLWGG SR RCV
Sbjct: 8   ITEVVILMTAVWLTVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCV 67

Query: 71  KQCDGGGQWARLSTCKRCMWSCKCSCTSSS 100
            +CD GG WA L++CK+C+  CKC C+SSS
Sbjct: 68  NRCDSGGAWASLASCKQCITKCKCRCSSSS 97

[Close]

BLAST of Cp4.1LG09g06590.1 vs. ExPASy TrEMBL
Match: A0A6P3ZGK3 (uncharacterized protein LOC107414952 OS=Ziziphus jujuba OX=326968 GN=LOC107414952 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.31e-24
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 15 VILMTAICLTSP---CPADAKQCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRWRCVK 74
          ++L+  + + SP   CP+D ++C  CI ++M   CPACAP LRCMA+CLW G SR  C+K
Sbjct: 15 MLLVVWLMMISPAKGCPSDGRECKTCIVNQMKFGCPACAPILRCMARCLWSGSSRRNCIK 74

Query: 75 QCDGGGQWARLSTCKRCMWSCKCSC 96
          +CD GG   +LS CK+CM  CKCSC
Sbjct: 75 RCDCGGGTPKLSDCKKCMSRCKCSC 99

[Close]

BLAST of Cp4.1LG09g06590.1 vs. ExPASy TrEMBL
Match: A0A438FE46 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_111219 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.96e-24
Identity = 47/99 (47.47%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 1   MEISLRFHSAITAAVILMTAICLTSP---CPADAKQCGDCIRDRMALHCPACAPPLRCMA 60
           ME + +  +     ++L+    + SP   CP+D  +C DCI ++M   CP+CAP LRCMA
Sbjct: 4   MEKNKQLSTMAAVLMLLLVFWLMISPALGCPSDGSECKDCIVNQMRNGCPSCAPVLRCMA 63

Query: 61  QCLWGGGSRWRCVKQCDGGGQWARLSTCKRCMWSCKCSC 96
           +CLWGG S+ +CVK+CD  G   RLS CK+CM  CKCSC
Sbjct: 64  RCLWGGTSKSKCVKRCDCYGGKPRLSDCKKCMSRCKCSC 102

[Close]

BLAST of Cp4.1LG09g06590.1 vs. ExPASy TrEMBL
Match: A0A438JGC2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_014623 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.60e-23
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 9   SAITAAVILMTAICLT-SP---CPADAKQCGDCIRDRMALHCPACAPPLRCMAQCLWGGG 68
           S + A ++L     LT SP   CP+D  +C DCI ++M   CP+CAP L CMA+CLWGG 
Sbjct: 11  STMAAVLMLQLVFWLTISPALSCPSDGSECKDCIVNQMRNVCPSCAPVLSCMARCLWGGA 70

Query: 69  SRWRCVKQCDGGGQWARLSTCKRCMWSCKCSC 96
           S+ +CVK+CD  G   RLS CK+CM  CKCSC
Sbjct: 71  SKSKCVKRCDCYGGKPRLSDCKKCMSRCKCSC 102

[Close]

BLAST of Cp4.1LG09g06590.1 vs. ExPASy TrEMBL
Match: A0A166H086 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002220 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.03e-23
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 27 CPADAKQCGDCIRDRMALHCPACAPPLRCMAQCLWGGG-SRWRCVKQCDGGGQWARLSTC 86
          CPAD  +C DCI +RM   CPACAP +RCMAQCLW  G S+ +CVK+CD  G + R+S C
Sbjct: 28 CPADGSECKDCIANRMKSDCPACAPIMRCMAQCLWDKGMSQKQCVKKCDCDGGYPRVSDC 87

Query: 87 KRCMWSCKCSCT 97
          K+C+  CKCSC+
Sbjct: 88 KKCLLQCKCSCS 99

[Close]

BLAST of Cp4.1LG09g06590.1 vs. TAIR 10
Match: AT1G12064.1 (unknown protein; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-11
Identity = 31/73 (42.47%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 28  PADAKQCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRWRCVK--QCDGGGQWARLSTC 87
           P     C  C+ ++M   CP C P LRCMA+CLWGG ++ +C    +CD   +   L  C
Sbjct: 38  PPSQNSCKTCMAEQMKYDCPKCVPVLRCMARCLWGGVTQRKCTTTCRCDTAAK-PSLLEC 97

Query: 88  KRCMWSCKCSCTS 99
           KRC+  CKCSC +
Sbjct: 98  KRCVSRCKCSCAA 109

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g06590.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g06590.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573550.1	2.20e-64	92.08	hypothetical protein SDJN03_27437, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6573554.1	1.81e-63	91.09	hypothetical protein SDJN03_27441, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7012656.1	2.70e-58	90.43	hypothetical protein SDJN02_25409, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAF7120202.1	1.00e-24	48.51	hypothetical protein RHSIM_Rhsim13G0146200 [Rhododendron simsii]	[more]
KAG9144894.1	1.23e-24	46.67	hypothetical protein Leryth_021302 [Lithospermum erythrorhizon]	[more]

BLAST of Cp4.1LG09g06590.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW71	1.01e-38	67.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G186620 PE=4 SV=1	[more]
A0A6P3ZGK3	1.31e-24	51.76	uncharacterized protein LOC107414952 OS=Ziziphus jujuba OX=326968 GN=LOC10741495...	[more]
A0A438FE46	3.96e-24	47.47	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_111219 PE=4 SV=1	[more]
A0A438JGC2	1.60e-23	52.17	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_014623 PE=4 SV=1	[more]
A0A166H086	2.03e-23	58.33	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002220 ...	[more]

BLAST of Cp4.1LG09g06590.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12064.1	1.7e-11	42.47	unknown protein; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG09g06590	Cp4.1LG09g06590	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g06590.1:exon:001	Cp4.1LG09g06590.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g06590.1:cds:001	Cp4.1LG09g06590.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g06590.1	Cp4.1LG09g06590.1-protein	polypeptide