Cp4.1LG06g06440.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TAAACAGACCTTTTCTGATTGGGCTATTTTTCACCATCCATCGAGAACCAGAGGGCGAAGAACAAAACATGGCAACGCTTTACGAAGATGCCGAAGCTTGGAACGCAGTAAGCCGTTTCCGGATGCTATCAAATGTCCAATCCATGGCGTCGGTAAGAAACTCCTTATTGTTGATTTCGGATTGAATTGCATGAGAGCCACGATTCATTTGTAGAGACAGTCATGGAATTGTTTACGAGTATGAACTTAGGTGATTTCTCAGAAATCTGTTCAGGTGTAATCGTATTGTGTGGTTTGAATTTGTGGTGATTGTTCGTATTGTTTTACTTTGTTTGTCGTAAGCTGCCTCTCTCGGAGGCGCTGTGGCTAACCATTTCGAGATTTGGAACTGTCTGTCTGATGATCTTCGCCGAAACGGCTTGGTTCTGGCAGAGTACTGTTCTCGACTACGACGAAGATGATAATGCCACTTCGCCTACCATCTCTGTGCTGGCAAGTTGTTGCGTGTGATTGATCATTTGCCTATCTATAATTTTTGTGATTTTTCCGTTTTGATGTTCGGCGGACAAATGTGAGGTCTACTTGCGGCAAGAATCTTCCCGCGAGAAAAATGCGAGTGGTGGATTCGGATTTTCGACCGAAGAACCTGGAATCTACACGGCCTGTTTCGCGGAAGATGGCGGCAACCGCGACGGAGAGGAGAGCAGCTCCCATGATATAAATAGCCTCGGTATTCTCGTTTATATTAAAACTAATAATAATAAGAATAAAGAACAATAATAATAGCAATTAAGTCTAAAAATGGAAATTAAATTTTGGAAAGCCATTTTTCTCAGCTGGGGGATTCTCAATCGAAAGAATCCAATTCCACTTCCCAATCTCCGGGCAACGCGAGACTCACCTGTAAGAATGATATCTATAGCTGCTACGATAGTCACGCGACCTTCTTCTTCATAATTACTGCTCAAAGCGCAAACAGCCCGTCGGATTTTGACTCCTTCGGCTTCATTATCGCAAACTGATTCTTTACTTGAAGCCCGGATGCTGTTTGTGCGATGGTCTCAAAGAAAAACTGCAAGCCGCCTATCTGATCGCCGGCTCCGATTCTCTCCACGATGTTGGTTTGCAGGCACTCACTTCACAGCCCCCTTTCATTGTATTTGTAGTTCCTTTACTGTTGTAAGCGCTTTAATTTGATATGTGATGTTTATTTTCAAGTAGGTGAGGGATATCACTACTAACCCAGAATGGGAGAGAGCTGACCAGTATGGGATTCCCGTGCTCGCGAAAGTGCTCTCCGATGGCTCGGAGGTTGGTCATATTCATTCATTCTTGTGATTCTGATTAGTATGAACATGTATTTTGGTTGTTTTAGCTTATTTGGAAGGAATGTCGATTTCAGATTTGCGGAGCTCTTCCTGGGGCTTTTAGTCTAGAATTATGCTTATGGATTTATAAAATGATCAAATGTTTGTGCACTGCTTGTTTCCGTCCCCTGGTTGTTTTTAAATCCTTGGCTGGTGTTGTACTGAAATTCTATTTTCCAGGCACTAGATTAGTAATCCCTTGTTCTTGCATTTAACGTTGGAGTTTGAGGTTCCAATGATTTGGTCACCTCGTCTTCTGTCTTCATTTAAGTTATTGGATGACTATAATTATGAATCCTGTTGGGTTTGTGATTAATCCAACAAGGAAGGCTTTTATCAATGTACTGGTAACTGTGTTCCATCTGCTTGATTCAAGTACTTTCGTCCTATTTTGTGTAATTTGTTTATTGACTGTTATGAGTATTTTGTTTCCTAGGTTTTGTCTCTTCCTATTCTTTCTTGCCATAGGCATCCGGTATAATGTGGAAATAAGCCAGTAATAGAGTGCCTAAAGTCATATTAAGTGAAGTAAGATTAAAAGAATAATAACAAAAATAAAAGGGAAATAGAAAACCTTGCAATCTAGGATTCTGAACCACTGAATAGTTCATTTCTTCAATTAAGATTTGATATGCTATGTATCCTGACCTTATCTACATAGAAGGCTTCCTCTAAAAATACGTTTCTTTGGTGTCTGAAACTGAGACAGTCAGCGTTGGTTGTCTTATTGCATTTTAGGAATCAGTATGGGATAAAAACGCGTTTAAATCTTAATATTCTTGTCCTGTTTTATCAAAGAAACCTACTGAATCAATATGACATGCAACAAAAGAAGTCTTCTGGGGATGGCTTTCAGCTCACTTGGATCTATCCATAATAACATCCCTGATAAACATTTATTGAATGCCAGTGAATCAAAAGGGCTTTACCGATGATGGCTTGTTGAAAGTATGGTAACGTTTGAATGAACTCGATAGATTTGCACGTTTTTGTAGATCTTATGAATATTCTAAATTACCTGACATCTTAAACTAAGGGATTGGGTTGTTAATATGAATACTATATTGTTAAACATGTAGAGGCCTATTCCAATTGAAACTCCTGTGTGGAAAAGATAGACCTGAAGCAGAAGCCTCATATACTATCAAAGTTGCACATGGTTACTTCTACTTCCATTTCCTGTGCTTAAATGTGCTGTAAACTAAGCTAGCTAGACCTATACCTTCCTGGAATTCTTACTATGAACGAAGGAGATATGGGTTTCTTTCTTAGAGAGGAAAATATGAAACGAGTAAGCTGTTGGGAGGGTTTTACTGTGAACTGTCAAAATCAAAATAACGAACAAGGTGGCTATATGGTAAAGAAAAACACAATTAATATGAAGATGCAAGTAACATAGAGATCCATACATTCTAAATATTCTCTCATATTAGTTCCATCACTCTGTTAGTAGCAAGTTAGCATTTGGAAAGCTCTAAGTAGTGAATTTATCTCTCTCCTTAATCACCCCTCAACCTTCGGAGGAGTGTGGGTGAAATTGAGTTTGTCGCCTAAGTGGCATCTATAAAGAAAATAAAGCAAAGATAATCTGACACAAACTGTTGAACTATTCTTTTTTGTTTTTGCTGGATGCGAAAACTTAAAAACCCTCCTTTCGAGCATGGGGAGTACCCGACTGAGGAGGTGCATTACTCATGTTCAATTATTCTCGTACAACTCTTTTCTAGTTTGACTGAGAGGGAATTGTTGCAAAATAGGTGTCACTTAGAGGTTTTGCCTTTTGATTGAAAAGAATAAGAGGAAAGGGCTATGATCACAAAAATCAGTTACCAAAGAAGACGAGAGATCTCCCTATTAATCAAGTAACTTACAAATATGCATCTCGATTGGCATGAATCAAAGGAAAGGCTATAACTCTGCAATTTTTGAAAGTATTTCAGCAGTCCATTTACACTATGCCATCATGAGGATACTTCAATGGTTAAGACATTTCTACTTCCTTGAAGAAGTTATAGGTTCAAATCTCCACCTCCAGCTGCGTTGTAATATCGCCAATACAGTTATTAAAAGTGGGAAATATTAGTGTACTTATTTAAAGAACACTGTCACTTTTTAAGACCTTTTAAGTTCAAAATTCTTCAAGCCAGATGGAGTATGCCTTTTGTTTTTCCTGACGAGGTAGCCTGATATGGGGTTGCTGGTACATTTATAACCTTATTGTTTCTTCTCCCAAATTGTATGACGAATATCTCACTTACTTTACTATGTTCACTTTATCTTTCCTTTTCCTTTTACGAAGGGGGGAGTTGAAAAGTAGTTTTTATTTTACTTTATTTACAGGAATAATTTTTCATCTGATATTTTTTTTTTATAATATACTGACTTGGATAGTTATTGTTTATTCTGATACTTGTTCCTGGTCAGATTTTGAGAAAATAAATTAAACAAGCTTGCAATCCCAGAAAATAAATAACTATGCAGTGTGGTTCTTGAAATTATATATTCTATAATTGAATTCAACTACTGCACGTTCCCTTGGGATATGTTTGATTATAAGATGTTGTATCTGGAACAAATGTTCATTTTTTCTTTTAGTTTTTGTGTATTCCTGCAGACTTATATATGCCGTGCTTCTGTTTACTTAGGTTCAATGTCTTCATCTTTTTCTGTCTTCTTTTGGACTCTCTTTATATGATGCCTTACACGATTTGAGTTTGTGTTGATAGTTTAGTTTAATTTTCTTTCTCCATCTTAACGTCATTCCGAACTTTATGAACATTTTCCATCATTAAGATTATTCAGTGGATACATTGTCTTTTCTTGAAGTTCCTGTAAAATTTGTTTCAATTACTTTATGGATGTTATGTAGCACGAAAGTTTCCATAGTTAAGACAACCTACTTACTTAAAGTAATCATGTGATTAGCTTCACACATGCTTATCTACAAAAGCTTCTCTTTTAAATGATAGCATTCGAGATTACCATTCCTTTGATGTTTGACCTCTAACCCTCAAAAGTAGTTAGAATTCTTGTACTTGCTAATATCCCACGTGTGATAGCTGCAGATTTATAGATCTAGGTCATCTGTTTTTCTGTAATTTATTTAAGCAGTCGCGTATCGTGTATTTCTAGTATCTCGTAAGAGATAGCAGCAGAGTTAGAAATCTAGGTCAGGTGTATTAATTGTACTATACACCTTTATGTATGTTGTGTTATACACTGGTTTTATTATTTAATAGAGCTCAGGATAAACAAATGTTTATATTTTATATCTAGAAAACTGTTCTCCTTTTTACTAGATACCAAGTAATATTCTCAATTATTCGATTTGGGTTACTTGGCATTAGAGATATCTAGATGTATGTAGAGTTTATCTATCTTTATTTGCTTTTTTATTTCTTTTTGTCTTCCATTTCTATCTCAAGTAGTCCTTTTCAGATAATACTTAGTTACGCAGACGGCAAGTTAGCTTATTAATCTAGTTTCTATGATTTTTGTTCATTGCTCTCTTATATTTTGGGGTCAGGAGATTTCCTTATGTTGTGTACTGTTTCCTGATGTCATGAACTAATATGCACTAGAAACACAAAAGCAATTACAGACAATTGCTGATCCTGACTCATTGCTCACTGATGGATGTGGATTCCATTTTTTGTATTATTGTTCATCTTTTGGCCCAATTTTCATTCAAGGAAGCTTGCTTTCAATTGATGGAATTCTCTTTAACACCAGTCCACGTGTCAATTGAAGAAAATTGATGCAATATTTGTGTTCGAAAGTTCTTCTTAGACTCTGGAGATATACTGTCCTTTCATCTTTCCTTTTCCTCTCTTTTGGGTGCTTTTGCTTGGCTGAACATTTTTTAGTAATGCTACACACATTGCTTCCCTTTTTCATGTGCAATTCAATTATTCTTGAATCTGAAATTCATAGAGAAACTTTATACACTTGTTATTAAAATTCTGATCTCCACAGGCTGTAATGTAATAAATAAATAAATACTTTATTCCATCAACTTGAGATAAAAAAAACAAGGACCATTGATGCATCGTGTGGCTTCTTTTCTTCACCAAAAGAAATTTATGTCGTTTTCACTTTCTAATATACCATGTTTGACCATGTTTCTCTTTGCATGAAATTATTGACGGTCATTATCATAATGTGTTCAAATACGCCATCGATTCCCACTCTTTCTTTCTTTCTTTCATTTATTTTTCTTTTAGTGAAAGTGAAAAGTCGTCCATTTATGCTTCAGAAAGGGTTTGCAAAAGAAGGTTTGGCCGTGGAGGGGAAAAAGGGCAGAAAAGTAGAGATTTTGACCTGGTCAAAAGTTGTAAACATGAACAAACACAACATTCATTTGAAGGTTTTGTAGGTTTCTTATCTCCACATGATTACCAGAGTTCCAAACTTGTAAGTTAACTCAATCTCTTCTGGGTTCATTGCAAAAACCTCTCTTTTTGTTATAATTGATCTGTTCTTATATTGTGACAGCTCAAAAAAGAAAAGGCCCTGATAGTTCTGTTCATGAAGGGGAGGATCATTCATTTACCCGACTTCCCCGGCCGACCACTTGATCTGTTTTGGTAAACCTCAAATTTAACTGTTAGATTCTGTTTGTTCTTTATGATTGCTTGATTGATGATTCTGAATCTCCCAATGGCAAATGAATCTCCTGTACTCTTTTTGAAATCTGATTCAAGATTTACCTTGCCACACTCAAGCTAGGCTGTCTTGCTTTCCTCCTTTATTGCTCCTCTGACTGGCTTTACCGTGTCAATCAATCACCAAACACTTGCTGCCAAAACAAAGGCGCTTTTTGCTTTCTTTCTTTTGGGTGTATTGCAATGACAAGGTTTGGTTTGGTTTGATTTCTTTTGTAACTGTCCAAGCCCACTACTAGTAGATATTATCTTCAAGGTTTTTAAAATGTGTTTGTTAGGGGAGGTTTCCACACCCTTATAAAAAATGTTTCGTTTTCTTCTTCAACGGTTGTGTAATCTCACAATCCACCCACTTTCAGAACTCAGCATCCTCGCTCGCACTCATTCCTCTCTTAAATCGATGTGTGAGATCTCACAATCCACCTCACTTCAGGGCCTAGTATCCTTGTGGCACTCGTTCCTCTCTAATCGAAGTGGGATCTCACATCTTTGATCCCTACACCAAACAAACTCCAATTTTTTTCCATTTCCTCTTGAGAAAAGGATGAACAAACTTTATATCAATGGGGTCTCTTGCTTTGGAGTTGTTATTTCTTGTTTTACACAATCAAAGTGCCCAATAATTAGATTAGATTCCTTTAGTAGCACTTGGGATTTGTAATTTAATGGCAAACTTATTTTCATACAACTTTTAACAACTCTCACTTTATAACAATTCTTTCTTTCTTGATCATGTAGTGTATGTATATCTTGTTTGCCAGAGCTTTCTTCAAGCTTTTCCCTTTTTATTTTCATTTTTTTTAGGGTTTTTGGTGTGTTCTTACAAAGACATCTACT TAAACAGACCTTTTCTGATTGGGCTATTTTTCACCATCCATCGAGAACCAGAGGGCGAAGAACAAAACATGGCAACGCTTTACGAAGATGCCGAAGCTTGGAACGCAGTAAGCCGTTTCCGGATGCTATCAAATGTCCAATCCATGGCGTCGGTCTACTTGCGGCAAGAATCTTCCCGCGAGAAAAATGCGAGTGGTGGATTCGGATTTTCGACCGAAGAACCTGGAATCTACACGGCCTGTTTCGCGGAAGATGGCGGCAACCGCGACGGAGAGGAGAGCAGCTCCCATGATATAAATAGCCTCGCGCAAACAGCCCGTCGGATTTTGACTCCTTCGGCTTCATTATCGCAAACTGATTCTTTACTTGAAGCCCGGATGCTGTTTGTGCGATGGTCTCAAAGAAAAACTGCAAGCCGCCTATCTGATCGCCGGCTCCGATTCTCTCCACGATGTTGGGATATCACTACTAACCCAGAATGGGAGAGAGCTGACCAGTATGGGATTCCCGTGCTCGCGAAAGTGCTCTCCGATGGCTCGGAGGGTTTTTGGTGTGTTCTTACAAAGACATCTACT ATGGCAACGCTTTACGAAGATGCCGAAGCTTGGAACGCAGTAAGCCGTTTCCGGATGCTATCAAATGTCCAATCCATGGCGTCGGTCTACTTGCGGCAAGAATCTTCCCGCGAGAAAAATGCGAGTGGTGGATTCGGATTTTCGACCGAAGAACCTGGAATCTACACGGCCTGTTTCGCGGAAGATGGCGGCAACCGCGACGGAGAGGAGAGCAGCTCCCATGATATAAATAGCCTCGCGCAAACAGCCCGTCGGATTTTGACTCCTTCGGCTTCATTATCGCAAACTGATTCTTTACTTGAAGCCCGGATGCTGTTTGTGCGATGGTCTCAAAGAAAAACTGCAAGCCGCCTATCTGATCGCCGGCTCCGATTCTCTCCACGATGTTGGGATATCACTACTAACCCAGAATGGGAGAGAGCTGACCAGTATGGGATTCCCGTGCTCGCGAAAGTGCTCTCCGATGGCTCGGAGGGTTTTTGGTGTGTTCTTACAAAGACATCTACT MATLYEDAEAWNAVSRFRMLSNVQSMASVYLRQESSREKNASGGFGFSTEEPGIYTACFAEDGGNRDGEESSSHDINSLAQTARRILTPSASLSQTDSLLEARMLFVRWSQRKTASRLSDRRLRFSPRCWDITTNPEWERADQYGIPVLAKVLSDGSEGFWCVLTKTST Homology
BLAST of Cp4.1LG06g06440.1 vs. NCBI nr
Match: KAG6591898.1 (hypothetical protein SDJN03_14244, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 167 bits (423), Expect = 6.82e-49 Identity = 105/179 (58.66%), Postives = 116/179 (64.80%), Query Frame = 0
BLAST of Cp4.1LG06g06440.1 vs. NCBI nr
Match: KAG7024772.1 (hypothetical protein SDJN02_13590, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 54.3 bits (129), Expect = 2.01e-06 Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0
BLAST of Cp4.1LG06g06440.1 vs. NCBI nr
Match: XP_023522644.1 (uncharacterized protein LOC111786639 [Cucurbita pepo subsp. pepo] >XP_023522650.1 uncharacterized protein LOC111786639 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 55.8 bits (133), Expect = 2.13e-06 Identity = 41/93 (44.09%), Postives = 48/93 (51.61%), Query Frame = 0
BLAST of Cp4.1LG06g06440.1 vs. NCBI nr
Match: XP_022981072.1 (uncharacterized protein LOC111480330 [Cucurbita maxima] >XP_022981073.1 uncharacterized protein LOC111480330 [Cucurbita maxima]) HSP 1 Score: 55.5 bits (132), Expect = 2.80e-06 Identity = 44/93 (47.31%), Postives = 51/93 (54.84%), Query Frame = 0
BLAST of Cp4.1LG06g06440.1 vs. NCBI nr
Match: XP_011653807.1 (uncharacterized protein LOC101215760 [Cucumis sativus] >KGN54576.1 hypothetical protein Csa_012382 [Cucumis sativus]) HSP 1 Score: 55.5 bits (132), Expect = 2.91e-06 Identity = 45/92 (48.91%), Postives = 52/92 (56.52%), Query Frame = 0
BLAST of Cp4.1LG06g06440.1 vs. ExPASy TrEMBL
Match: A0A6J1ISY9 (Glutaredoxin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111480330 PE=3 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.35e-06 Identity = 44/93 (47.31%), Postives = 51/93 (54.84%), Query Frame = 0
BLAST of Cp4.1LG06g06440.1 vs. ExPASy TrEMBL
Match: A0A0A0L383 (Glutaredoxin-like protein OS=Cucumis sativus OX=3659 GN=Csa_4G365550 PE=3 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.41e-06 Identity = 45/92 (48.91%), Postives = 52/92 (56.52%), Query Frame = 0
BLAST of Cp4.1LG06g06440.1 vs. ExPASy TrEMBL
Match: A0A2C9U191 (Glutaredoxin-like protein OS=Manihot esculenta OX=3983 GN=MANES_18G075800 PE=3 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.91e-06 Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0
BLAST of Cp4.1LG06g06440.1 vs. ExPASy TrEMBL
Match: A0A2Z6PUB7 (Glutaredoxin-like protein OS=Trifolium subterraneum OX=3900 GN=TSUD_134090 PE=3 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 3.68e-06 Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 0
BLAST of Cp4.1LG06g06440.1 vs. ExPASy TrEMBL
Match: A0A5A7TPX6 (Glutaredoxin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00650 PE=3 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 5.19e-06 Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 0
BLAST of Cp4.1LG06g06440.1 vs. TAIR 10
Match: AT4G08280.1 (Thioredoxin superfamily protein ) HSP 1 Score: 50.4 bits (119), Expect = 1.6e-06 Identity = 23/28 (82.14%), Postives = 23/28 (82.14%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
|