Cp4.1LG06g05870.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g05870.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein MODIFYING WALL LIGNIN-2-like
Location	Cp4.1LG06: 3680735 .. 3682565 (+)
Sequence length	882
RNA-Seq Expression	Cp4.1LG06g05870.1
Synteny	Cp4.1LG06g05870.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAAAATTCTCCCTTTCTCTCTCTCCCTCTCTCTCTCCCTCTCTCTCTCTCCCCCTTCCCTCGTATTTGACCAGTGATGAAGATGAAAAACGAGAGATTTGATTCGAAAAAAGTCTCGACTTTCACAAGTCAAGAGAGAAAATGATGAATTTTCCACCACTAACCTCCAAGGGTCTTTTCCCGTGATTTAAACTCCCATTGCTTCTTCGATCTTCTGGCCGCCATGGAAAAGCCTCCTTCCAGTTTCGTGATAAGCTTTTCCATTGTCGCCGTCCTCACCCTCGCCTCCTTCGCATCATGTATGGCTGCTGAATTCAACAGAACAAAAGTAAGTTTCTTTCAATTTCTTTCCCATTTACAATATGAATTCTTCGTACAAATTAAAGCTTCCTCGAACATCATAATCGGAATCTATTGTAGAAAAAGGACCTGAAGTTGAACGGCAGATTCTGCTTCCTGCCTGAAAGTGAAGCATTCAAATTGGGAGTCGCAGGTATAGTCTGTTTAATAATGGCTCATATCATCGGAAACACCATAATCTGCCACACCTATTGGCCAAAAGAGCACAGAAAGAGTTGCAGTGTCAAAAGGCCTCTGCTTTCAACCACCCTTCTCATTTCTTGGTAAGTAATTGTTTTTTCACAATAATCTTCTTCTTTCTTTCCTTTTTTTTCTGTATTTCTCAGTTCATTTGGGGAAATTTTGGTAGTAACAGTAACCCTTTTTGGTATTTATTGTTACTGTGCCCAAATTTTTAGACAACTTTCAGAAAAAAAAAAGTTAGAGAAATTCAATTAATGAATTATAAAAGGAATAACAGAGCTGGTCACCGGAGGGAGAGAGGAAACTAAAAAGATAATATACTAAAGGAACGTGGCCAGCTTTGAGGTGTTTCGGATTCCTATACATGGGATCCATGATCTAATTAATTACTAGACAACAATATTATTATTAATAAAACAATTATAGTACGAGAGAATTATTTCAAGAATAAAGTAATATTGTCAAAAAAGAAAGGCATACAGTAATTTTAAAACTTACCTTACAACCATAACCATTCTTTAAATAGTGGTAAAAGTAAAACGAAAAGAAGTCTTTCCGTTCAGCCTTTTATGTTTTAATATTTTCAATGTGTCCTTCCATGAATGTCAAAATTAATTAATGTAAGCTTATAAGAAAAACGATTCTTAGCAAGTTGCATAGATATAAATTAAAGCACTTAAAGAATCTTAGAAAAAGGGATTATAAATTTTCTTCTCTCAGCTAGTATAATTTTTCTAATAATTCTTTCCTAAGTTTCAACTCAACCAATTTCAACTATCTAACTGAAAACTGAAAAATGTAACGAACATTGAAGAATAAATTAAAAAAGAAGTTCTAATATGGAATAAATTTAAAACGCCCTTCAATATTAAAGCATATATTTAGGTAAAAAAATTAATAAACAGAGGCTAAAATGGTAAATAAAATGAAATACCAGGGTCAGCTTCGGAATTGCGGTGGCGATGATGATGGGAGCAACCAGCATGAGCAGGAGACAGGAGTATGGGAAGGGGTGGGTGGAAGGAGAATGCTATTTGGTCAAAGACGGAGTATTTGTTGGCGCGGCCCTCTTGGTTCTCATTAATGGAGGGTCCACCATAGGTTCGGCTGCCATTGGAAGGAGGCGGCGCGCTAAAGGGCCCAATCAAGTACATGCACAAATTGGATAACAAGACTGGTTATACATCATCAAAATATTTCCCTTCTTTTTTCCTTTTTGCATTTATTGTATGATGAATAATGAAAATGCCTCATATTCCCACTTATAGTTCTTAATTTATTTTTCTT

mRNA sequence

TGGAAAATTCTCCCTTTCTCTCTCTCCCTCTCTCTCTCCCTCTCTCTCTCTCCCCCTTCCCTCGTATTTGACCAGTGATGAAGATGAAAAACGAGAGATTTGATTCGAAAAAAGTCTCGACTTTCACAAGTCAAGAGAGAAAATGATGAATTTTCCACCACTAACCTCCAAGGGTCTTTTCCCGTGATTTAAACTCCCATTGCTTCTTCGATCTTCTGGCCGCCATGGAAAAGCCTCCTTCCAGTTTCGTGATAAGCTTTTCCATTGTCGCCGTCCTCACCCTCGCCTCCTTCGCATCATGTATGGCTGCTGAATTCAACAGAACAAAAAAAAAGGACCTGAAGTTGAACGGCAGATTCTGCTTCCTGCCTGAAAGTGAAGCATTCAAATTGGGAGTCGCAGGTATAGTCTGTTTAATAATGGCTCATATCATCGGAAACACCATAATCTGCCACACCTATTGGCCAAAAGAGCACAGAAAGAGTTGCAGTGTCAAAAGGCCTCTGCTTTCAACCACCCTTCTCATTTCTTGGGTCAGCTTCGGAATTGCGGTGGCGATGATGATGGGAGCAACCAGCATGAGCAGGAGACAGGAGTATGGGAAGGGGTGGGTGGAAGGAGAATGCTATTTGGTCAAAGACGGAGTATTTGTTGGCGCGGCCCTCTTGGTTCTCATTAATGGAGGGTCCACCATAGGTTCGGCTGCCATTGGAAGGAGGCGGCGCGCTAAAGGGCCCAATCAAGTACATGCACAAATTGGATAACAAGACTGGTTATACATCATCAAAATATTTCCCTTCTTTTTTCCTTTTTGCATTTATTGTATGATGAATAATGAAAATGCCTCATATTCCCACTTATAGTTCTTAATTTATTTTTCTT

Coding sequence (CDS)

ATGGAAAAGCCTCCTTCCAGTTTCGTGATAAGCTTTTCCATTGTCGCCGTCCTCACCCTCGCCTCCTTCGCATCATGTATGGCTGCTGAATTCAACAGAACAAAAAAAAAGGACCTGAAGTTGAACGGCAGATTCTGCTTCCTGCCTGAAAGTGAAGCATTCAAATTGGGAGTCGCAGGTATAGTCTGTTTAATAATGGCTCATATCATCGGAAACACCATAATCTGCCACACCTATTGGCCAAAAGAGCACAGAAAGAGTTGCAGTGTCAAAAGGCCTCTGCTTTCAACCACCCTTCTCATTTCTTGGGTCAGCTTCGGAATTGCGGTGGCGATGATGATGGGAGCAACCAGCATGAGCAGGAGACAGGAGTATGGGAAGGGGTGGGTGGAAGGAGAATGCTATTTGGTCAAAGACGGAGTATTTGTTGGCGCGGCCCTCTTGGTTCTCATTAATGGAGGGTCCACCATAGGTTCGGCTGCCATTGGAAGGAGGCGGCGCGCTAAAGGGCCCAATCAAGTACATGCACAAATTGGATAA

Protein sequence

MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAGIVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMSRRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQIG

Homology

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BLAST of Cp4.1LG06g05870.1 vs. ExPASy Swiss-Prot
Match: A2RVU1 (Protein MODIFYING WALL LIGNIN-1 OS=Arabidopsis thaliana OX=3702 GN=MWL1 PE=1 SV=2)

HSP 1 Score: 116.3 bits (290), Expect = 3.5e-25
Identity = 60/152 (39.47%), Postives = 88/152 (57.89%), Query Frame = 0


Query: 20  LASFASCMAAEFNRTKK----------KDLKLNGRFCFLPESEAFKLGVAGIVCLIMAHI 79
           LA+F  C++AEF + K           KDLK +G  C+LPE+ AF LG+A +VC+ +A I
Sbjct: 8   LAAFFLCLSAEFQKAKALLRAQVFLKGKDLKWDGESCYLPENRAFGLGIAALVCVSVAQI 67

Query: 80  IGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMSRRQEYGKGW 139
           +GN +IC  +   +  ++           LL SWV+F +AV ++    SM+R Q YGKGW
Sbjct: 68  VGNVVICRGFTKTDKTRTTI----FCIILLLFSWVNFAVAVTLISVGASMNREQIYGKGW 127

Query: 140 VEGECYLVKDGVFVGAALLVLINGGSTIGSAA 162
           +  ECYLVKDGVF  +  L +    + +G+ A
Sbjct: 128 LNRECYLVKDGVFAASGFLSVTTMAAILGAFA 155

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BLAST of Cp4.1LG06g05870.1 vs. ExPASy Swiss-Prot
Match: O65708 (Protein MODIFYING WALL LIGNIN-2 OS=Arabidopsis thaliana OX=3702 GN=MWL2 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-24
Identity = 61/152 (40.13%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 12  FSIVAVLTLASFASCMAAEFNRTKKKDLKLN-GRFCFLPESEAFKLGVAGIVCLIMAHII 71
           +S+V  L L SF +C AAEF RT+K+D++ +  R C++P S AF LG A ++C  +A I+
Sbjct: 7   YSVVFSLGLVSFITCFAAEFKRTQKEDIRWDTERNCYVPGSHAFGLGSAAVLCFCLAQIV 66

Query: 72  GNTIICHTYWPKEHRKSCSVKRPLLSTT--LLISWVSFGIAVAMMMGATSMSRRQEYGKG 131
           GN ++   +  +  R+       L   T  LL+SW +F + V ++  A SMSR Q YG+G
Sbjct: 67  GNIVVFRNHRTRTKREDGYKITDLTLPTVLLLLSWSNFVVVVLILSTAISMSRAQAYGEG 126

Query: 132 WVEGECYLVKDGVFVGAALLVLINGGSTIGSA 161
           W++ +CYLVKDGVF  +  L ++  G+   SA
Sbjct: 127 WLDEDCYLVKDGVFAASGCLAILGLGALTISA 158

[Close]

BLAST of Cp4.1LG06g05870.1 vs. NCBI nr
Match: XP_023535227.1 (uncharacterized protein LOC111796718 [Cucurbita pepo subsp. pepo] >KAG6591859.1 Protein MODIFYING WALL LIGNIN-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024724.1 hypothetical protein SDJN02_13542, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 360 bits (924), Expect = 1.88e-125
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG 60
           MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG
Sbjct: 1   MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG 60

Query: 61  IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMS 120
           IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMS
Sbjct: 61  IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMS 120

Query: 121 RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQIG 179
           RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQIG
Sbjct: 121 RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQIG 179

[Close]

BLAST of Cp4.1LG06g05870.1 vs. NCBI nr
Match: XP_022937014.1 (uncharacterized protein LOC111443438 [Cucurbita moschata])

HSP 1 Score: 358 bits (919), Expect = 1.09e-124
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG 60
           MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG
Sbjct: 1   MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG 60

Query: 61  IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMS 120
           IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMS
Sbjct: 61  IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMS 120

Query: 121 RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQI 178
           RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQI
Sbjct: 121 RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQI 178

[Close]

BLAST of Cp4.1LG06g05870.1 vs. NCBI nr
Match: XP_022976861.1 (uncharacterized protein LOC111477105 [Cucurbita maxima])

HSP 1 Score: 348 bits (894), Expect = 6.82e-121
Identity = 175/178 (98.31%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG 60
           ME PPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG
Sbjct: 1   MENPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG 60

Query: 61  IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMS 120
           IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLL TTLLISWVSFGIAVAM+MGATSMS
Sbjct: 61  IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLL-TTLLISWVSFGIAVAMIMGATSMS 120

Query: 121 RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQI 178
           RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQI
Sbjct: 121 RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQI 177

[Close]

BLAST of Cp4.1LG06g05870.1 vs. NCBI nr
Match: XP_022139149.1 (uncharacterized protein LOC111010123 isoform X1 [Momordica charantia])

HSP 1 Score: 322 bits (826), Expect = 1.65e-110
Identity = 158/179 (88.27%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 1   MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG 60
           MEK PS F ISFSIVA LTL SFASCMAAEFNRTKKKDLKL+GRFCFLPESEAFKLGVA 
Sbjct: 1   MEKHPSGFAISFSIVAFLTLVSFASCMAAEFNRTKKKDLKLSGRFCFLPESEAFKLGVAS 60

Query: 61  IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMS 120
           +VCL+MA IIGNTIICH+YWPKE RKSCSVKRPLLSTTLLISWVSFGIAVAMM GATSMS
Sbjct: 61  LVCLVMAQIIGNTIICHSYWPKEKRKSCSVKRPLLSTTLLISWVSFGIAVAMMSGATSMS 120

Query: 121 RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQIG 179
           RRQEYGKGWVEGECY+VKDG+FVGAALLVLINGGSTIGSAAIGRR    GP+Q+HAQIG
Sbjct: 121 RRQEYGKGWVEGECYVVKDGIFVGAALLVLINGGSTIGSAAIGRRSHVTGPSQIHAQIG 179

[Close]

BLAST of Cp4.1LG06g05870.1 vs. NCBI nr
Match: XP_022139157.1 (uncharacterized protein LOC111010123 isoform X2 [Momordica charantia])

HSP 1 Score: 316 bits (809), Expect = 6.21e-108
Identity = 157/179 (87.71%), Postives = 165/179 (92.18%), Query Frame = 0


Query: 1   MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG 60
           MEK PS F ISFSIVA LTL SFASCMAAEFNRTKK DLKL+GRFCFLPESEAFKLGVA 
Sbjct: 1   MEKHPSGFAISFSIVAFLTLVSFASCMAAEFNRTKK-DLKLSGRFCFLPESEAFKLGVAS 60

Query: 61  IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMS 120
           +VCL+MA IIGNTIICH+YWPKE RKSCSVKRPLLSTTLLISWVSFGIAVAMM GATSMS
Sbjct: 61  LVCLVMAQIIGNTIICHSYWPKEKRKSCSVKRPLLSTTLLISWVSFGIAVAMMSGATSMS 120

Query: 121 RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQIG 179
           RRQEYGKGWVEGECY+VKDG+FVGAALLVLINGGSTIGSAAIGRR    GP+Q+HAQIG
Sbjct: 121 RRQEYGKGWVEGECYVVKDGIFVGAALLVLINGGSTIGSAAIGRRSHVTGPSQIHAQIG 178

[Close]

BLAST of Cp4.1LG06g05870.1 vs. ExPASy TrEMBL
Match: A0A6J1F9Y8 (uncharacterized protein LOC111443438 OS=Cucurbita moschata OX=3662 GN=LOC111443438 PE=4 SV=1)

HSP 1 Score: 358 bits (919), Expect = 5.27e-125
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG 60
           MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG
Sbjct: 1   MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG 60

Query: 61  IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMS 120
           IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMS
Sbjct: 61  IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMS 120

Query: 121 RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQI 178
           RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQI
Sbjct: 121 RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQI 178

[Close]

BLAST of Cp4.1LG06g05870.1 vs. ExPASy TrEMBL
Match: A0A6J1II23 (uncharacterized protein LOC111477105 OS=Cucurbita maxima OX=3661 GN=LOC111477105 PE=4 SV=1)

HSP 1 Score: 348 bits (894), Expect = 3.30e-121
Identity = 175/178 (98.31%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG 60
           ME PPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG
Sbjct: 1   MENPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG 60

Query: 61  IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMS 120
           IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLL TTLLISWVSFGIAVAM+MGATSMS
Sbjct: 61  IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLL-TTLLISWVSFGIAVAMIMGATSMS 120

Query: 121 RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQI 178
           RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQI
Sbjct: 121 RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQI 177

[Close]

BLAST of Cp4.1LG06g05870.1 vs. ExPASy TrEMBL
Match: A0A6J1CC41 (uncharacterized protein LOC111010123 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010123 PE=4 SV=1)

HSP 1 Score: 322 bits (826), Expect = 7.98e-111
Identity = 158/179 (88.27%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 1   MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG 60
           MEK PS F ISFSIVA LTL SFASCMAAEFNRTKKKDLKL+GRFCFLPESEAFKLGVA 
Sbjct: 1   MEKHPSGFAISFSIVAFLTLVSFASCMAAEFNRTKKKDLKLSGRFCFLPESEAFKLGVAS 60

Query: 61  IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMS 120
           +VCL+MA IIGNTIICH+YWPKE RKSCSVKRPLLSTTLLISWVSFGIAVAMM GATSMS
Sbjct: 61  LVCLVMAQIIGNTIICHSYWPKEKRKSCSVKRPLLSTTLLISWVSFGIAVAMMSGATSMS 120

Query: 121 RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQIG 179
           RRQEYGKGWVEGECY+VKDG+FVGAALLVLINGGSTIGSAAIGRR    GP+Q+HAQIG
Sbjct: 121 RRQEYGKGWVEGECYVVKDGIFVGAALLVLINGGSTIGSAAIGRRSHVTGPSQIHAQIG 179

[Close]

BLAST of Cp4.1LG06g05870.1 vs. ExPASy TrEMBL
Match: A0A6J1CD79 (uncharacterized protein LOC111010123 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010123 PE=4 SV=1)

HSP 1 Score: 316 bits (809), Expect = 3.01e-108
Identity = 157/179 (87.71%), Postives = 165/179 (92.18%), Query Frame = 0


Query: 1   MEKPPSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAG 60
           MEK PS F ISFSIVA LTL SFASCMAAEFNRTKK DLKL+GRFCFLPESEAFKLGVA 
Sbjct: 1   MEKHPSGFAISFSIVAFLTLVSFASCMAAEFNRTKK-DLKLSGRFCFLPESEAFKLGVAS 60

Query: 61  IVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMS 120
           +VCL+MA IIGNTIICH+YWPKE RKSCSVKRPLLSTTLLISWVSFGIAVAMM GATSMS
Sbjct: 61  LVCLVMAQIIGNTIICHSYWPKEKRKSCSVKRPLLSTTLLISWVSFGIAVAMMSGATSMS 120

Query: 121 RRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRRAKGPNQVHAQIG 179
           RRQEYGKGWVEGECY+VKDG+FVGAALLVLINGGSTIGSAAIGRR    GP+Q+HAQIG
Sbjct: 121 RRQEYGKGWVEGECYVVKDGIFVGAALLVLINGGSTIGSAAIGRRSHVTGPSQIHAQIG 178

[Close]

BLAST of Cp4.1LG06g05870.1 vs. ExPASy TrEMBL
Match: A0A1S3B9G0 (uncharacterized protein LOC103487629 OS=Cucumis melo OX=3656 GN=LOC103487629 PE=4 SV=1)

HSP 1 Score: 307 bits (787), Expect = 8.07e-105
Identity = 154/183 (84.15%), Postives = 167/183 (91.26%), Query Frame = 0


Query: 1   MEKPPSS-FVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVA 60
           MEKP SS FVISFSIVA+LTLASFASC+AAEFNRTKK+DLKLNG+FCFLPESEAFKLG+ 
Sbjct: 1   MEKPSSSSFVISFSIVAILTLASFASCLAAEFNRTKKEDLKLNGKFCFLPESEAFKLGIG 60

Query: 61  GIVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSM 120
           G+VCLIMA IIG+T+I H+YWPKEHRKSCSVK+PLLS  LLISWVSF IAV MM GATSM
Sbjct: 61  GLVCLIMAQIIGSTLIYHSYWPKEHRKSCSVKKPLLSIALLISWVSFVIAVIMMSGATSM 120

Query: 121 SRRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAAIGRRRR---AKGPNQVHA 179
           SRRQEY +GWVEGECYLVKDG+FVGAALLVLINGGSTIGSAAIGRRRR    K PNQ+HA
Sbjct: 121 SRRQEYARGWVEGECYLVKDGIFVGAALLVLINGGSTIGSAAIGRRRRNHVVKAPNQIHA 180

[Close]

BLAST of Cp4.1LG06g05870.1 vs. TAIR 10
Match: AT1G31720.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 118.6 bits (296), Expect = 5.1e-27
Identity = 64/167 (38.32%), Postives = 95/167 (56.89%), Query Frame = 0


Query: 5   PSSFVISFSIVAVLTLASFASCMAAEFNRTKK----------KDLKLNGRFCFLPESEAF 64
           P SF+  F  + +  LA+F  C++AEF + K           KDLK +G  C+LPE+ AF
Sbjct: 13  PKSFLF-FMFIFLFGLAAFFLCLSAEFQKAKALLRAQVFLKGKDLKWDGESCYLPENRAF 72

Query: 65  KLGVAGIVCLIMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMM 124
            LG+A +VC+ +A I+GN +IC  +   +  ++           LL SWV+F +AV ++ 
Sbjct: 73  GLGIAALVCVSVAQIVGNVVICRGFTKTDKTRTTI----FCIILLLFSWVNFAVAVTLIS 132

Query: 125 GATSMSRRQEYGKGWVEGECYLVKDGVFVGAALLVLINGGSTIGSAA 162
              SM+R Q YGKGW+  ECYLVKDGVF  +  L +    + +G+ A
Sbjct: 133 VGASMNREQIYGKGWLNRECYLVKDGVFAASGFLSVTTMAAILGAFA 174

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BLAST of Cp4.1LG06g05870.1 vs. TAIR 10
Match: AT4G19370.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 114.4 bits (285), Expect = 9.5e-26
Identity = 61/152 (40.13%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 12  FSIVAVLTLASFASCMAAEFNRTKKKDLKLN-GRFCFLPESEAFKLGVAGIVCLIMAHII 71
           +S+V  L L SF +C AAEF RT+K+D++ +  R C++P S AF LG A ++C  +A I+
Sbjct: 7   YSVVFSLGLVSFITCFAAEFKRTQKEDIRWDTERNCYVPGSHAFGLGSAAVLCFCLAQIV 66

Query: 72  GNTIICHTYWPKEHRKSCSVKRPLLSTT--LLISWVSFGIAVAMMMGATSMSRRQEYGKG 131
           GN ++   +  +  R+       L   T  LL+SW +F + V ++  A SMSR Q YG+G
Sbjct: 67  GNIVVFRNHRTRTKREDGYKITDLTLPTVLLLLSWSNFVVVVLILSTAISMSRAQAYGEG 126

Query: 132 WVEGECYLVKDGVFVGAALLVLINGGSTIGSA 161
           W++ +CYLVKDGVF  +  L ++  G+   SA
Sbjct: 127 WLDEDCYLVKDGVFAASGCLAILGLGALTISA 158

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BLAST of Cp4.1LG06g05870.1 vs. TAIR 10
Match: AT4G21310.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 45.8 bits (107), Expect = 4.2e-05
Identity = 32/119 (26.89%), Postives = 55/119 (46.22%), Query Frame = 0


Query: 15  VAVLTLASFASC----MAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVAGIVCLIMAHII 74
           + +L LA   S     + AE  + K K LK+    C  P   AFK G+A  + L++AH+ 
Sbjct: 9   ICILILAMDVSAGILGIEAEIAQNKVKHLKMWIFECRDPSYTAFKYGLAACILLVLAHVT 68

Query: 75  GNTI-ICHTYWPKEHRKSCSVKRPLLSTTLLISWVSFGIAVAMMMGATSMSRRQEYGKG 129
            N +  C     ++  +  S  + L   +L+ +W+   IA +M++  T  + R     G
Sbjct: 69  ANFLGGCLCVASRQDLEKSSANKQLAVASLIFTWIILAIAFSMLIVGTMANSRSRKNCG 127

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g05870.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVU1	3.5e-25	39.47	Protein MODIFYING WALL LIGNIN-1 OS=Arabidopsis thaliana OX=3702 GN=MWL1 PE=1 SV=...	[more]
O65708	1.3e-24	40.13	Protein MODIFYING WALL LIGNIN-2 OS=Arabidopsis thaliana OX=3702 GN=MWL2 PE=2 SV=...	[more]

BLAST of Cp4.1LG06g05870.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535227.1	1.88e-125	100.00	uncharacterized protein LOC111796718 [Cucurbita pepo subsp. pepo] >KAG6591859.1 ...	[more]
XP_022937014.1	1.09e-124	100.00	uncharacterized protein LOC111443438 [Cucurbita moschata]	[more]
XP_022976861.1	6.82e-121	98.31	uncharacterized protein LOC111477105 [Cucurbita maxima]	[more]
XP_022139149.1	1.65e-110	88.27	uncharacterized protein LOC111010123 isoform X1 [Momordica charantia]	[more]
XP_022139157.1	6.21e-108	87.71	uncharacterized protein LOC111010123 isoform X2 [Momordica charantia]	[more]

BLAST of Cp4.1LG06g05870.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F9Y8	5.27e-125	100.00	uncharacterized protein LOC111443438 OS=Cucurbita moschata OX=3662 GN=LOC1114434...	[more]
A0A6J1II23	3.30e-121	98.31	uncharacterized protein LOC111477105 OS=Cucurbita maxima OX=3661 GN=LOC111477105...	[more]
A0A6J1CC41	7.98e-111	88.27	uncharacterized protein LOC111010123 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CD79	3.01e-108	87.71	uncharacterized protein LOC111010123 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A1S3B9G0	8.07e-105	84.15	uncharacterized protein LOC103487629 OS=Cucumis melo OX=3656 GN=LOC103487629 PE=...	[more]

BLAST of Cp4.1LG06g05870.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31720.1	5.1e-27	38.32	Protein of unknown function (DUF1218)	[more]
AT4G19370.1	9.5e-26	40.13	Protein of unknown function (DUF1218)	[more]
AT4G21310.1	4.2e-05	26.89	Protein of unknown function (DUF1218)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009606	Modifying wall lignin-1/2	PFAM	PF06749	DUF1218	coord: 61..151 e-value: 2.3E-16 score: 60.0
None	No IPR available	PANTHER	PTHR31769:SF6	PROTEIN MODIFYING WALL LIGNIN-1	coord: 7..163
None	No IPR available	PANTHER	PTHR31769	OS07G0462200 PROTEIN-RELATED	coord: 7..163
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..26 score: 5.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG06g05870	Cp4.1LG06g05870	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g05870.1:five_prime_utr:001	Cp4.1LG06g05870.1:five_prime_utr:001	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g05870.1:exon:001	Cp4.1LG06g05870.1:exon:001	exon
Cp4.1LG06g05870.1:exon:002	Cp4.1LG06g05870.1:exon:002	exon
Cp4.1LG06g05870.1:exon:003	Cp4.1LG06g05870.1:exon:003	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g05870.1:cds:001	Cp4.1LG06g05870.1:cds:001	CDS
Cp4.1LG06g05870.1:cds:002	Cp4.1LG06g05870.1:cds:002	CDS
Cp4.1LG06g05870.1:cds:003	Cp4.1LG06g05870.1:cds:003	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g05870.1:three_prime_utr:001	Cp4.1LG06g05870.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g05870.1	Cp4.1LG06g05870.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane