Cp4.1LG05g14210.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g14210.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
Location	Cp4.1LG05: 9901450 .. 9904610 (-)
Sequence length	768
RNA-Seq Expression	Cp4.1LG05g14210.1
Synteny	Cp4.1LG05g14210.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGAGAAACGGAAGGGAAAAAGGAGGAGGTAGAGGAACAGAGATTAGAGGCGCTTCAAATCAAAGTAGCAGGTGAATTTCGGATTGGATTTTGCCTAAGAGCTGAACTCGTTGGGTGCGCTCAGTCGCCCAATGCTGCTCGCGCGCTTCTTCCCTAGCGCTGCGTAATGCCATAATAAGGTTTCTTTTATTAATTCAAACAATTTTCATCCATTTTCACTATTTTTATTAATTTTCTTTTTATTAAAAAGGCCTTGGTTTATGCATTATTTACTGAAACAAAGGGCCTCGATTTTAGAATTATTACGAAATCACCCCTTTCCAAGGAATTATTCCCACAGTAGAAACCTCTCAGACTGAAAGTAGGGTTTTAGCATTAACCCTCGCAGGCAACGAAGCAAGACTCGAGTTCTTTCAGATTCTATCATTTCTTCTGAGTAACGATGGCCTCAATTGGCGCTAGATCCGTTTTCCGATCACTTTCCGGCTCTGCTCGCCGTGCTGCTGCTCACATTGGTTCTCAAGCCCGTTCATCGTCAGGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGCGTTGACTAAATGCTCTTGCGTCCATGAAAAGCGCGAAAAGATTCCGAGTCTATAGCTGCTTGAGTTTTTTTCTTTTCCTTCTCTTTCTCCAACTGGAGAAATGTTTCAATTATTATGTATGGTGATGTATTTGGCTTATGAAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATAATGCCGTTTCACTCTGCGTCGTCCGCAGCTTTGATGATTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGGTGCGCTAACTGATAATTTAGTTCTCAACTTTCTTGATCTGTCATGAGCTAGATCGATATAGGAAAGGACTATATAATAATTTTGTACAGCTTGTAAGTGACAATTTACGGGAATTTCAGCTTAATAATTATTCTCAAGAATCAAGAAAGGAAGTTGTAGTTCGAGTGGGGGTACTGATCAATTATATTTAGAAGTACTGATATCTGTATTACAGTTTAGTGGATACATTAGCCCCATTAACCGCATGCTTCTGGAGGAAGAAAGATCCATGCTACTATTCTTTGATTAAATTTGCTAACGTCTATGAACCATCAGGAGCTACACCATGAAAATATTTCCTATGGGTTAAATTTAGTGCCAATACGGGTTATCATGCCAAGTAGCTTGTAATTGTTCATAAGAATTTCCTGCGTACATAAAGTTGGATCTGTTAACTCTAGTGATATGATATCTCTTCATGAGCTTTTCTTACTATTAACTTGTAAACATAGATTCTTTATCCCACTCCGTAATTTTCTTGATTTTATGTTTTGAAAGCAGAAGTGGATCTTCTTCTAGGTTGTCTAACTAGTGGATTTTTTTACTCTTGAATTAGGTAGCTAGCACACTTTATAGGCCCATTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGTGAGTTGGTGCCCATGAACTTGTATAAAACAGATACAATTGAACGGAATTATATAATAACATGCATGCATAATAAGTTGATCATTTTTTCCTCCTAGTGGACAGTTTATGACATCAAGTGGCTATCTCAAATTAAGATGCAAACGAGCTTAACAGACAATAATGTTTCATTCTCTCTTTTCTTCGCCCTTCATGTCCCGTACTTGGATCAGATTTAAGACCTAAACCTTCTCTTTGTAGTTTTTTTTTTTTCTTACTAGAATAGGTCATTTATGAGAAAACCTTCCATTCTTTATTCAAATAGTTAATTAAAAAACTACATTCCCCTGTTTTATATGTAGGCAAAGACGAGACTAGATGAGGATCGGGAAGCAGGAAGGAATGACTTGAGTTGTTTTTTGAGTTTCACCTTTTAAGTCCTAGGCGTTGCATACCCCCCTGCCCCGCCCTTCAGACAAAAAAGAATAAAAAAACCATAGGCGATGATATCATCAATAGGTTAGATGAGATTATTGTATTTGGAATGAAGTAATAAACTATGGCATTCTATTCAGTTCTCTGTGTTTGTAGATTGTTGTCTTTTGAAGTGTTAATGGATTATATATACAATTTAATTCTGCAACTATATGGGGTTACAGATTACTAGATCCTTGCCGAAAATTTTTTGCTTCTAAATAGCTTATTGTTTGCTGTTTTGCAAAATTTACTTTGATCTCAAGTATTTGGTTCACTACTTCATATAGATGGGGTGGCAAACTCAATTATATTACTCTGACCATCAAGTACCGTGGAAATAGGAGTGAAATCAGGGATATAAACAAGAACATAGGCTAAACTTTGTTACTTTTTGGACATAAAAAGTATCAATATTTTGGGGGGCTAGATCCCCATCACAAGGTCTGACACGATCCGATCCAGAAACCACTTGAACATTATCAACTTTGTAAGCCTACTTGAGTATTGAGTATATGTAAGAACGGAACTCCGTGCAATGGATAATTATAACTTTGGAAAAAAGAATCTGCTATGCTCACTTTTTTTTTACATTGAATCAATCATTTATTTTATATATGCTTGGACATGGATAAGATGATTTACTTGATGGGCAAGGTCTCTGGTTCAAGTCTAGGATGGCCAAGTTGTCTAATTAAAAATGGAGTTATCCTCTTTACCAGTTTTGAGCTCTTGAAGTCGAGAGATAGTTATCAATGTCACCAAACAAGAAGTTTGCTGTTACGTATTTCTAGTTCTTGCTGTCTGACTGTCCTTTGTTTTGTGTTCTAGGGCGGTGATATTCAATCAGCTTGTCTAACATGAAGGCTTGCCACAATGTTGAACTTGCCATTTTCATCACCTGTCTGTACCTCAAGCTGTCTTAATCTATCTGAGCTGTAACAGAATCTTTCCATATCCCATCTTTTCCCAGACGTTCTAAATTCTGTTTCCTGGCTTTTCATAGGACATGATTCAATATAGATAGATCGTCTGCAACACTCCCTATTACATCTTCTTTTGATATAATACTCAAAATCAGAATCTAGATGTGAGAACAGCATCCGGTTAGTGATTTGTCAAGTTTACTCATTAGACCAAATTTTGTTTCTCTGTTTTTTTGCTCCATGTTCTAATTTCAAGCCAAGTTTATCTC

mRNA sequence

ATCGAGAAACGGAAGGGAAAAAGGAGGAGGTAGAGGAACAGAGATTAGAGGCGCTTCAAATCAAAGTAGCAGTAACGATGGCCTCAATTGGCGCTAGATCCGTTTTCCGATCACTTTCCGGCTCTGCTCGCCGTGCTGCTGCTCACATTGGTTCTCAAGCCCGTTCATCGTCAGGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATAATGCCGTTTCACTCTGCGTCGTCCGCAGCTTTGATGATTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGGTAGCTAGCACACTTTATAGGCCCATTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGGCGGTGATATTCAATCAGCTTGTCTAACATGAAGGCTTGCCACAATGTTGAACTTGCCATTTTCATCACCTGTCTGTACCTCAAGCTGTCTTAATCTATCTGAGCTGTAACAGAATCTTTCCATATCCCATCTTTTCCCAGACGTTCTAAATTCTGTTTCCTGGCTTTTCATAGGACATGATTCAATATAGATAGATCGTCTGCAACACTCCCTATTACATCTTCTTTTGATATAATACTCAAAATCAGAATCTAGATGTGAGAACAGCATCCGGTTAGTGATTTGTCAAGTTTACTCATTAGACCAAATTTTGTTTCTCTGTTTTTTTGCTCCATGTTCTAATTTCAAGCCAAGTTTATCTC

Coding sequence (CDS)

ATGGCCTCAATTGGCGCTAGATCCGTTTTCCGATCACTTTCCGGCTCTGCTCGCCGTGCTGCTGCTCACATTGGTTCTCAAGCCCGTTCATCGTCAGGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATAATGCCGTTTCACTCTGCGTCGTCCGCAGCTTTGATGATTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGGTAGCTAG

Protein sequence

MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLESIMPFHSASSAALMISMLSISRRSCGWLPEGS

Homology

[Close]

BLAST of Cp4.1LG05g14210.1 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-07
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 5  GARSVFRSLSGSARRAAAHIGSQARSSSGSP--FRMATNKPLSHRTFRCAAEMSFCLESI 64
          GARS+ R  + S+R AAA  G  A  +  +P  FR    +       R   E+SFC+ES+
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSASSAALMISMLSISRRSCGWLPE 91
          +P+HSA+++ALM S LSIS ++ GWL +
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of Cp4.1LG05g14210.1 vs. NCBI nr
Match: XP_022947068.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata] >XP_023534318.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171 bits (433), Expect = 2.23e-53
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91
          SIMPFHSASSAALMISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91

[Close]

BLAST of Cp4.1LG05g14210.1 vs. NCBI nr
Match: KAG7026975.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171 bits (434), Expect = 2.35e-53
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEGS 92
          SIMPFHSASSAALMISMLSISRRSCGWLPEG+
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEGA 92

[Close]

BLAST of Cp4.1LG05g14210.1 vs. NCBI nr
Match: XP_023534316.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171 bits (433), Expect = 2.52e-53
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91
          SIMPFHSASSAALMISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91

[Close]

BLAST of Cp4.1LG05g14210.1 vs. NCBI nr
Match: XP_022947067.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 171 bits (433), Expect = 2.52e-53
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91
          SIMPFHSASSAALMISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91

[Close]

BLAST of Cp4.1LG05g14210.1 vs. NCBI nr
Match: XP_022971142.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 168 bits (426), Expect = 2.61e-52
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91
          SIMPFHSASSAA+MISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEG 91

[Close]

BLAST of Cp4.1LG05g14210.1 vs. ExPASy TrEMBL
Match: A0A6J1G5L1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451052 PE=4 SV=1)

HSP 1 Score: 171 bits (433), Expect = 1.08e-53
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91
          SIMPFHSASSAALMISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91

[Close]

BLAST of Cp4.1LG05g14210.1 vs. ExPASy TrEMBL
Match: A0A6J1G5E8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451052 PE=4 SV=1)

HSP 1 Score: 171 bits (433), Expect = 1.22e-53
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91
          SIMPFHSASSAALMISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91

[Close]

BLAST of Cp4.1LG05g14210.1 vs. ExPASy TrEMBL
Match: A0A6J1I155 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1)

HSP 1 Score: 168 bits (426), Expect = 1.26e-52
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91
          SIMPFHSASSAA+MISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEG 91

[Close]

BLAST of Cp4.1LG05g14210.1 vs. ExPASy TrEMBL
Match: A0A6J1I2H5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1)

HSP 1 Score: 168 bits (426), Expect = 1.43e-52
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91
          SIMPFHSASSAA+MISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEG 91

[Close]

BLAST of Cp4.1LG05g14210.1 vs. ExPASy TrEMBL
Match: A0A6J1CIN8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011321 PE=4 SV=1)

HSP 1 Score: 153 bits (387), Expect = 1.09e-46
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MAS+GARSVFRS SGSARRAAAHIGS+AR+SS SPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASLGARSVFRSFSGSARRAAAHIGSEARASS-SPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91
          S+MPFHSASS+ALM SMLSISR SCGWLPEG
Sbjct: 61 SMMPFHSASSSALMTSMLSISRNSCGWLPEG 90

[Close]

BLAST of Cp4.1LG05g14210.1 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-11
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 6  ARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLESIMPF 65
          ARSVFRS  G A  AA        SS+ S F++    PLSHR FR   E+S C+E+++P+
Sbjct: 4  ARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLPY 63

Query: 66 HSASSAALMISMLSISRRSCGWLPEGS 93
          H+A+++AL+ SMLS+S RS  W  +G+
Sbjct: 64 HTATASALLNSMLSVSGRSI-WTFQGT 89

[Close]

BLAST of Cp4.1LG05g14210.1 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 6  ARSVFRSLSGSARRAAAHIGSQAR---SSSGSPFRMATNKPLSHRTFRCAAEMSFCLESI 65
          ARSVFRS +  A   A    +  +   SS+ + FRM    PL++R FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAALMISMLSISRRSCGWLPEG 92
          +P+H+A+++AL+ SMLS+SRR  GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

[Close]

BLAST of Cp4.1LG05g14210.1 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 6  ARSVFRSLSGSARRAAAHIGSQAR---SSSGSPFRMATNKPLSHRTFRCAAEMSFCLESI 65
          ARSVFRS +  A   A    +  +   SS+ + FRM    PL++R FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAALMISMLSISRRSCGWLPEG 92
          +P+H+A+++AL+ SMLS+SRR  GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

[Close]

BLAST of Cp4.1LG05g14210.1 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 6  ARSVFRSLSGSARRAAAHIGSQAR---SSSGSPFRMATNKPLSHRTFRCAAEMSFCLESI 65
          ARSVFRS +  A   A    +  +   SS+ + FRM    PL++R FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAALMISMLSISRRSCGWLPEG 92
          +P+H+A+++AL+ SMLS+SRR  GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

[Close]

BLAST of Cp4.1LG05g14210.1 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 9.9e-11
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 6  ARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLESIMPF 65
          ARSVFRS  G A  AA        SS+ S F++    PLSHR FR   E+S C+E+++P+
Sbjct: 4  ARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLPY 63

Query: 66 HSASSAALMISMLSISRRS 85
          H+A+++AL+ SMLS+S RS
Sbjct: 64 HTATASALLNSMLSVSGRS 82

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g14210.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZJ3	2.9e-07	42.05	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Cp4.1LG05g14210.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947068.1	2.23e-53	100.00	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
KAG7026975.1	2.35e-53	98.91	Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita argyr...	[more]
XP_023534316.1	2.52e-53	100.00	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
XP_022947067.1	2.52e-53	100.00	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
XP_022971142.1	2.61e-52	97.80	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]

BLAST of Cp4.1LG05g14210.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G5L1	1.08e-53	100.00	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
A0A6J1G5E8	1.22e-53	100.00	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A6J1I155	1.26e-52	97.80	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
A0A6J1I2H5	1.43e-52	97.80	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A6J1CIN8	1.09e-46	90.11	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ...	[more]

BLAST of Cp4.1LG05g14210.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33847.2	4.4e-11	45.98	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]
AT1G28395.2	7.6e-11	42.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.1	7.6e-11	42.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.3	7.6e-11	42.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G33847.1	9.9e-11	48.10	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033251	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial	PANTHER	PTHR33156:SF48	PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 3..91
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 3..91

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG05g14210	Cp4.1LG05g14210	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g14210.1:exon:005	Cp4.1LG05g14210.1:exon:005	exon
Cp4.1LG05g14210.1:exon:004	Cp4.1LG05g14210.1:exon:004	exon
Cp4.1LG05g14210.1:exon:003	Cp4.1LG05g14210.1:exon:003	exon
Cp4.1LG05g14210.1:exon:002	Cp4.1LG05g14210.1:exon:002	exon
Cp4.1LG05g14210.1:exon:001	Cp4.1LG05g14210.1:exon:001	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g14210.1:three_prime_utr:001	Cp4.1LG05g14210.1:three_prime_utr:001	three_prime_UTR
Cp4.1LG05g14210.1:three_prime_utr:002	Cp4.1LG05g14210.1:three_prime_utr:002	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g14210.1:cds:001	Cp4.1LG05g14210.1:cds:001	CDS
Cp4.1LG05g14210.1:cds:002	Cp4.1LG05g14210.1:cds:002	CDS
Cp4.1LG05g14210.1:cds:003	Cp4.1LG05g14210.1:cds:003	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g14210.1:five_prime_utr:001	Cp4.1LG05g14210.1:five_prime_utr:001	five_prime_UTR
Cp4.1LG05g14210.1:five_prime_utr:002	Cp4.1LG05g14210.1:five_prime_utr:002	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g14210.1	Cp4.1LG05g14210.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000741	karyogamy