Cp4.1LG05g06900.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g06900.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
Location	Cp4.1LG05: 4231950 .. 4235983 (+)
Sequence length	1023
RNA-Seq Expression	Cp4.1LG05g06900.1
Synteny	Cp4.1LG05g06900.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCGCAAACCACGTCATCATCCACGTACATCTTCGTTCGATCTGGGAGCGGAATCAAGGCACCTGCTTGCTGAAGCTGAATAGAAAACGAAAATCGAGAGTCGAAAGCGCCGGAACTCCGAGGTAGGGAAATGGCGTCGGTGGTGCGGGGGATTGTGAAGTCGATCAAAGATAAAGGGATCGGCAGTTTCTGGAGAGAGCTCAAGGAAGAAGGCTACTTGTATTATTTTCCTGCCCTATTTTTCTTTTTGATCCGTGGTTTTTTTTTTTTTTAATTAAATCTCTTGAGGAATCTTAGGGTTTGTTACTTTAGGATAATTGTCAAGTTTGAATACGAATTCGTGCCATTTGTTTCTGTTATGCTTAATCAATGTGATGTGTTGGTGTTTCTCTTATTGTTCTGGAAAGGGTTGTTTTAGTGTTCAATCAGTATGGGTATTTCTTTCCTTACATTGGATGTTTCAGACGCCAATAGCTGCGTGAGAAATGCAAATTTTGTTGATTATATACTCTCTCTACGCTCTTAGAGGTAGCTACTTGTGATTGCTTTCGTAGAATTTGTATAGCCATGGAATGTGCTAGATGTTTTTCCACCTCTCTATGGACTTGGTTTTCACTGTTCAATATCGTCTCTGTTTCTAAAGCAATATTGAAAATTGGATTGCGCTAACCATTTTTGTTTAATGTTGCAGGAAATGCTTACCCGATGGAAACCTATTGTAAGTTAAATTTCCATAATATTGAGCTTTCCTTTGAAATGATTTATGATTAACATCCTCTCTTCCCTCCACACACGCACGTACCTGTTTAGAAAAGTCGTTGTCGCCTTCTTTCACATACTGTCTGTGCTAGTTCGTGGATGACCTAGATTGTGCCGACCATGATCACTCACTATAAGCTTGTGTCAAAGAATATCATCCTCCTTAAGAAATCTCCAAATTCATTTTGCCAGATGAGTCATTTTTTAGGTTACTAATTCGAAGACCACCCTTTTCCAACCAGTAAAGCGATCTCTTTCCCATTTAGTTGGTGACTTCCTCCACTGGGATCAGCCCCCTCTTCAGAAAACTATGATTAATTTGGCACTACCTTTTAAGACCATAGTGGGGGGAGAAAAGAAAAAGAATAAAAATGAAAGTTCTTATACAATGCTTCAGTGGGTCATTCGGGAAGTATTGTGATAACTGAAATCACAATGGTCTTCCAAAATAATATATTATGCTAATATACTCAAGAAAGAGAATATGATGTACAGACTTGCTAAACGGTCACTGGTCAGTTCATTCCACTTATAATGTAGGTCTGAAAATGCTTACATGTTTTTCAATCTAAATTGCTGTATATTAAACCAATTCTCTCATTTGTATTTTGTGTTTCTCTTCTTGTGCGTGCCTTTTCTCTCTTGTCTAAGCTTTTTCTATTCCTTAAAATTTCCACAATATTAATATCTAATGTTTTTTAAATGAATGTAAATACACAAATGTTATATTTAAGTCTTGAGCTACTAAAAACTGTATTATCAATTAACTAAACCATGTACTGCAGTTTGTTCCTTGATTCAAATGATTTGTGCAATTATTTTATGATTTTCATGATACTTCTTGGAATTATCCATCCACAATATAACTTTGCACTTTAATTGACGCCAGCCTTTATTTTTGGGGGTCTCATTCATACACTGAATAATTTCCTTTCCTTGCAAACTATGCATTTTATTTGGTTTAGAGAGGCAATCTTAATCATCACTTATTCTGTTTATTTTGCTTATTCAGGCAAACCAAAATTCACAACATTGGTGCGACACTTGTGGGTGTTGATAAGTTTGGCAATAAATATTACCAGAAGCTCGATGAAGAGACTCAATATGGTATTTTTTTTCTGTCTAATTTGTTTTCATTGGAGTTTCACGATGTTACTACCTATACCTATTTTCTCTGGGTCAAGGTTAAGATACATAAACCATTGCTTAAGAAACTTACCATGTTAGGTTTATCTTTTGTCTGGTAGATTAAGTTGCAGGAATGTTTAAACGATAAATATTTTATATGCAGAGAAGGAATGTTTAATTGTTTAAAATTTTTACTCTTTTCTTTTAAAAACTTTGCCATCATATGTAACATTGTTAATTCAAACAGATTGATTATATATCTTGTTACAAACTCATGCAGTAGGTCTACATTCCCTTGCATTACATATAACTAGTTTTTGCTGTTCAAAACTCCCCAAATCCTGTGCTACGTAAAAGGGGATTGTCGCTTCACGTTTTGGAGGAGATTTTGGTGAACTCTTGCTTTCGTGATAGAAGAGTCTTGTGGCAAGCTTGTTCTTTTGCTATTCTGTGAGGGTGTGGCTCGAGACGAGTAGGTTTTAGAGATGGAGAGGGCTTTGGAAGAGGTGTGGAGGGCTGTGAGCCTTAATGCGTCATTATGGTCGTCTGTAAATCAGTCCTTTTGTAATTATCAACTTGGGGAAGCATTTTGGATTGGAGTCCGTTCTAGTTGTTAGTTGAACTCCTTTTGCAGTTCTTTTGTTTGTATGCCCTTGAAAATTCTTTCTCCTCTCAATAAATGCTTAGTTACTTTGGGAAAAAAAAAACCCAATTCCTGCTAATAATATCTAGCTGATAAGAATCCAAGAAAATCTTACTGGAACCCTCAAAAGTAAAAGCAAGAAAGGAAGTTTGAAATATGTAGGATGAGGATGACGCATTTTATATATTGTCCATCAAATTCACACAGGCTTGTTTCATGTTTACGAAAGAATTTGTGAACATTATTAGAACTCTTAATACAATTTTTATCACTGGAAGTGTTCTTTAGCCTTCTCTTTTTTATTTTGGGGAAATCTGAGCTAGCGAATTTGCCATTTCTGTAGGAAGACACAGGTGGGTTGAATATGCAGAGAAGGGTCGATATAATGCTTCTCAGGTGCCACCCGAATGGCATGGCTGGCTCCACTACATTACTGATCAGACAGGAGACGAGGTAATTCCCCTATCCATAATAATAACAATGATAAGGCTATATGTATAAAACAAACCTTAGCCTTTTAGTAATTTCAATCGTCTTCTTTTAAAAAATTTCAATTCTGCTCGCAATGTATTAAAAAAACCTCAATTAGGTCCTATAATAATTTGTTGATTATAAGTTGATATATCATTTTAAAAATACACATGGACGTACTACTTGGATGTCACTTCGACACATAAAATTCAAATCTTCCAATCAACAAAATTTCTTTCTTTCATGTGGCATGCCCATGTGTCCAAGTAAAACAGTAATTTAATGATACATGAGTTTACCTTTAACAAATTTATATATAGCAAAACCTAATCTTTCAAGAAGAAATTAAGAGTTATATAAATTATTATAGACCATATGGTTTCTTTAGCCTAATAATAAAATAGGAGGAGTTTTTTTTTTCACCTTGCGATGTTGTGGTTGATATGAAAAATATTTTGCAGCTTCTGATGCTGAAACCCAGCAGGTATGGAATAGAACATAAGGAAAATTTCTCTGGCGAAGGTGAAGAACTTATCTACCATTCCAAAGGACATGCTCTTAATCCTGGACAGAGAGATTGGACTCGATACCAGTCATGGCAACCAACCAAGTCCTAAGTAATTTGTCTATCAATCCCTTTCTTCAATCTGGAAATCCTTGGGATATTTGGTTGTCTTGTTTCTTCTGAATAAGCGACTTGTTATCTTATGCAAGCTGTGAAACATTCATCTTGTTTTGCTGCACAACACATGCGATGAATTTTTCAGCATGTTTCTGATTTTTGAAATTTTTAACAAATTCATTGTTGTGCCATCTCCTTCGAAACTCTGTTCTTTTGTGCAATGTCTTAGCAACCACTGTGATAGAACAAGTAATTTGGTCTCTCAAAATTTTGATATCTGCATTTGGCTATAATGAAGATCATAGTCAAATTGTGATTTTCATGTATCTTCAAAGATTGCCTAGTTGATAGCCGGACCAATGCCCATTCATCAATTGGATATCCATCTTTGTTGTATTGGTTAGCAATGA

mRNA sequence

TATCGCAAACCACGTCATCATCCACGTACATCTTCGTTCGATCTGGGAGCGGAATCAAGGCACCTGCTTGCTGAAGCTGAATAGAAAACGAAAATCGAGAGTCGAAAGCGCCGGAACTCCGAGGTAGGGAAATGGCGTCGGTGGTGCGGGGGATTGTGAAGTCGATCAAAGATAAAGGGATCGGCAGTTTCTGGAGAGAGCTCAAGGAAGAAGGCTACTTGAAATGCTTACCCGATGGAAACCTATTGCAAACCAAAATTCACAACATTGGTGCGACACTTGTGGGTGTTGATAAGTTTGGCAATAAATATTACCAGAAGCTCGATGAAGAGACTCAATATGGAAGACACAGGTGGGTTGAATATGCAGAGAAGGGTCGATATAATGCTTCTCAGGTGCCACCCGAATGGCATGGCTGGCTCCACTACATTACTGATCAGACAGGAGACGAGCTTCTGATGCTGAAACCCAGCAGGTATGGAATAGAACATAAGGAAAATTTCTCTGGCGAAGGTGAAGAACTTATCTACCATTCCAAAGGACATGCTCTTAATCCTGGACAGAGAGATTGGACTCGATACCAGTCATGGCAACCAACCAAGTCCTAAGTAATTTGTCTATCAATCCCTTTCTTCAATCTGGAAATCCTTGGGATATTTGGTTGTCTTGTTTCTTCTGAATAAGCGACTTGTTATCTTATGCAAGCTGTGAAACATTCATCTTGTTTTGCTGCACAACACATGCGATGAATTTTTCAGCATGTTTCTGATTTTTGAAATTTTTAACAAATTCATTGTTGTGCCATCTCCTTCGAAACTCTGTTCTTTTGTGCAATGTCTTAGCAACCACTGTGATAGAACAAGTAATTTGGTCTCTCAAAATTTTGATATCTGCATTTGGCTATAATGAAGATCATAGTCAAATTGTGATTTTCATGTATCTTCAAAGATTGCCTAGTTGATAGCCGGACCAATGCCCATTCATCAATTGGATATCCATCTTTGTTGTATTGGTTAGCAATGA

Coding sequence (CDS)

ATGGCGTCGGTGGTGCGGGGGATTGTGAAGTCGATCAAAGATAAAGGGATCGGCAGTTTCTGGAGAGAGCTCAAGGAAGAAGGCTACTTGAAATGCTTACCCGATGGAAACCTATTGCAAACCAAAATTCACAACATTGGTGCGACACTTGTGGGTGTTGATAAGTTTGGCAATAAATATTACCAGAAGCTCGATGAAGAGACTCAATATGGAAGACACAGGTGGGTTGAATATGCAGAGAAGGGTCGATATAATGCTTCTCAGGTGCCACCCGAATGGCATGGCTGGCTCCACTACATTACTGATCAGACAGGAGACGAGCTTCTGATGCTGAAACCCAGCAGGTATGGAATAGAACATAAGGAAAATTTCTCTGGCGAAGGTGAAGAACTTATCTACCATTCCAAAGGACATGCTCTTAATCCTGGACAGAGAGATTGGACTCGATACCAGTCATGGCAACCAACCAAGTCCTAA

Protein sequence

MASVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEHKENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS

Homology

[Close]

BLAST of Cp4.1LG05g06900.1 vs. ExPASy Swiss-Prot
Match: Q9M9M9 (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana OX=3702 GN=At3g03100 PE=1 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 9.9e-72
Identity = 118/156 (75.64%), Postives = 138/156 (88.46%), Query Frame = 0


Query: 3   SVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 62
           +V +  +++I++KG+G F R ++EEG+++CLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ
Sbjct: 4   TVAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 63

Query: 63  KLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEHKE 122
           KL  +TQYGRHRWVEYA K RYNASQVP EWHGWLH+ITD TGDELL LKP RYG+EHKE
Sbjct: 64  KLG-DTQYGRHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKE 123

Query: 123 NFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           NFSGEG+  IYHSKGH LNPGQ++WTRYQSW PTK+
Sbjct: 124 NFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKT 158

[Close]

BLAST of Cp4.1LG05g06900.1 vs. ExPASy Swiss-Prot
Match: Q9N2W7 (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Caenorhabditis elegans OX=6239 GN=Y94H6A.8 PE=3 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 4.2e-14
Identity = 56/146 (38.36%), Postives = 76/146 (52.05%), Query Frame = 0


Query: 17  IGSFWRELKEEGYLKCLPDGNLLQ--TKIHNIGATLVGVDKFGNKYYQKLDEETQYGRHR 76
           I  F + +KE G +K +     L   T++     TLVG D FGN+YY+  +      R+R
Sbjct: 12  IQKFGQMVKEIGGVKAVLKKRYLMDATRV----GTLVGSDNFGNRYYE--NNAYFVPRNR 71

Query: 77  WVEYAEKG--RYNASQVPPEWHGWLHYITDQTGDELLMLKP---SRYGIEHKENFSGEGE 136
           WVE+ +K    Y+A+QVPPEWH WLH+ITD        +KP     + +EHKEN S    
Sbjct: 72  WVEFPDKVWLDYDATQVPPEWHSWLHHITDDAPS----VKPPPTQDWVLEHKENTS---- 131

Query: 137 ELIYHSKGHALNPGQRDWTRYQSWQP 156
             IY  K +   P     T+ Q WQP
Sbjct: 132 --IYADKKYV--PYSTTRTKIQGWQP 139

[Close]

BLAST of Cp4.1LG05g06900.1 vs. ExPASy Swiss-Prot
Match: Q54MV7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium discoideum OX=44689 GN=ndufa12 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 2.7e-13
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 49  TLVGVDKFGNKYYQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDEL 108
           TLVGVDK GN+YY+   E   YGRHRWVEY +    + + +PPE+H W+H+++D+   E+
Sbjct: 33  TLVGVDKVGNRYYENRQE--IYGRHRWVEYGDYKSNDPTTIPPEYHSWIHHVSDKLPSEM 92

Query: 109 LMLKPSRYGIEHKENFSG 127
           L   P+ Y   H  N +G
Sbjct: 93  LPFSPT-YKRPHIANPTG 107

[Close]

BLAST of Cp4.1LG05g06900.1 vs. ExPASy Swiss-Prot
Match: Q0MQ85 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pongo pygmaeus OX=9600 GN=NDUFA12 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.8e-12
Identity = 39/94 (41.49%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 49  TLVGVDKFGNKYYQKLDEETQYGRHRWVEYAEK--GR-----YNASQVPPEWHGWLHYIT 108
           TLVG DK+GNKYY+  D +  +GRHRWV Y  +  G+      + S VPPEWH WLH IT
Sbjct: 37  TLVGEDKYGNKYYE--DNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHHWLHSIT 96

Query: 109 DQTGDELLMLKPSRYGIEHKENFSGEGEELIYHS 136
           D       +         HK N +G  E+ + +S
Sbjct: 97  DDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYS 128

[Close]

BLAST of Cp4.1LG05g06900.1 vs. ExPASy Swiss-Prot
Match: O97725 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Bos taurus OX=9913 GN=NDUFA12 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 43/115 (37.39%), Postives = 58/115 (50.43%), Query Frame = 0


Query: 28  GYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLDEETQYGRHRWVEYAEK--GR-- 87
           GYL+ L   N ++        TLVG DK+GNKYY+  D +  +GRHRWV Y  +  G+  
Sbjct: 22  GYLRVLFRANDVRV------GTLVGEDKYGNKYYE--DNKQFFGRHRWVIYTTEMNGKNT 81

Query: 88  ---YNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEHKENFSGEGEELIYHS 136
               + S VPPEWH WLH +TD                 HK N SG  ++ + +S
Sbjct: 82  FWDVDGSMVPPEWHRWLHCMTDDPPTVKPPTARKFIWTNHKFNLSGTPQQYVPYS 128

[Close]

BLAST of Cp4.1LG05g06900.1 vs. NCBI nr
Match: XP_023534747.1 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345 bits (884), Expect = 4.78e-120
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MASVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEH 120
           YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEH
Sbjct: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]

BLAST of Cp4.1LG05g06900.1 vs. NCBI nr
Match: XP_022958111.1 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Cucurbita moschata] >KAG6605691.1 putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035599.1 putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342 bits (876), Expect = 7.94e-119
Identity = 156/158 (98.73%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MASVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGIVKSIKDKGIG+FWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEH 120
           YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITD TGDELLMLKPSRYGIEH
Sbjct: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]

BLAST of Cp4.1LG05g06900.1 vs. NCBI nr
Match: XP_022996140.1 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Cucurbita maxima])

HSP 1 Score: 339 bits (870), Expect = 6.54e-118
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MASVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGIVKSIKDKGIG+FWRELKEEGYLKCLPDGNLLQTKIH IGATLVGVDKFGNKY
Sbjct: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEH 120
           YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITD TGDELLMLKPSRYGIEH
Sbjct: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]

BLAST of Cp4.1LG05g06900.1 vs. NCBI nr
Match: XP_004143640.2 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Cucumis sativus] >KGN50404.1 hypothetical protein Csa_000501 [Cucumis sativus])

HSP 1 Score: 337 bits (865), Expect = 3.78e-117
Identity = 153/158 (96.84%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MASVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGI+KSIKDKGIG+FWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEH 120
           YQK+DEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLH+ITD TGDELLMLKPSRYGIEH
Sbjct: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]

BLAST of Cp4.1LG05g06900.1 vs. NCBI nr
Match: XP_038875755.1 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Benincasa hispida])

HSP 1 Score: 335 bits (858), Expect = 4.42e-116
Identity = 151/158 (95.57%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MASVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGI+KSIKDKGIG+FWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEH 120
           YQ++DEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLH+ITD TGDELLMLKPSRYGIEH
Sbjct: 61  YQRVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158
           KENFSGEGEE IYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEEFIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]

BLAST of Cp4.1LG05g06900.1 vs. ExPASy TrEMBL
Match: A0A6J1H155 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita moschata OX=3662 GN=LOC111459435 PE=3 SV=1)

HSP 1 Score: 342 bits (876), Expect = 3.85e-119
Identity = 156/158 (98.73%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MASVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGIVKSIKDKGIG+FWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEH 120
           YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITD TGDELLMLKPSRYGIEH
Sbjct: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]

BLAST of Cp4.1LG05g06900.1 vs. ExPASy TrEMBL
Match: A0A6J1K5W7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita maxima OX=3661 GN=LOC111491451 PE=3 SV=1)

HSP 1 Score: 339 bits (870), Expect = 3.16e-118
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MASVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGIVKSIKDKGIG+FWRELKEEGYLKCLPDGNLLQTKIH IGATLVGVDKFGNKY
Sbjct: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEH 120
           YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITD TGDELLMLKPSRYGIEH
Sbjct: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]

BLAST of Cp4.1LG05g06900.1 vs. ExPASy TrEMBL
Match: A0A0A0KNC9 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis sativus OX=3659 GN=Csa_5G172840 PE=3 SV=1)

HSP 1 Score: 337 bits (865), Expect = 1.83e-117
Identity = 153/158 (96.84%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MASVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGI+KSIKDKGIG+FWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEH 120
           YQK+DEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLH+ITD TGDELLMLKPSRYGIEH
Sbjct: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]

BLAST of Cp4.1LG05g06900.1 vs. ExPASy TrEMBL
Match: A0A6J1ELZ2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita moschata OX=3662 GN=LOC111435820 PE=3 SV=1)

HSP 1 Score: 332 bits (852), Expect = 1.76e-115
Identity = 151/158 (95.57%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MASVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGI+KSIKDKG+G+F R+LKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGILKSIKDKGLGTFLRDLKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEH 120
           YQKLDE+TQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITD TGDELLMLKPSRYGIEH
Sbjct: 61  YQKLDEQTQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]

BLAST of Cp4.1LG05g06900.1 vs. ExPASy TrEMBL
Match: A0A5A7ULJ6 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00880 PE=3 SV=1)

HSP 1 Score: 332 bits (850), Expect = 3.56e-115
Identity = 150/158 (94.94%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 1   MASVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGI+KSIKDKGIG+FWRELKEEGYLKCL DGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLADGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEH 120
           YQ++DEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLH+ITD TGDELLMLKPSRYGIEH
Sbjct: 61  YQRVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158
           KENFSGEGEE IYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEEFIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]

BLAST of Cp4.1LG05g06900.1 vs. TAIR 10
Match: AT3G03100.1 (NADH:ubiquinone oxidoreductase, 17.2kDa subunit )

HSP 1 Score: 270.8 bits (691), Expect = 7.0e-73
Identity = 118/156 (75.64%), Postives = 138/156 (88.46%), Query Frame = 0


Query: 3   SVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 62
           +V +  +++I++KG+G F R ++EEG+++CLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ
Sbjct: 4   TVAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 63

Query: 63  KLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEHKE 122
           KL  +TQYGRHRWVEYA K RYNASQVP EWHGWLH+ITD TGDELL LKP RYG+EHKE
Sbjct: 64  KLG-DTQYGRHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKE 123

Query: 123 NFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           NFSGEG+  IYHSKGH LNPGQ++WTRYQSW PTK+
Sbjct: 124 NFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKT 158

[Close]

BLAST of Cp4.1LG05g06900.1 vs. TAIR 10
Match: AT3G03100.2 (NADH:ubiquinone oxidoreductase, 17.2kDa subunit )

HSP 1 Score: 268.5 bits (685), Expect = 3.5e-72
Identity = 117/156 (75.00%), Postives = 137/156 (87.82%), Query Frame = 0


Query: 3   SVVRGIVKSIKDKGIGSFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 62
           +V +  +++I++KG+G F R ++EEG+++CLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ
Sbjct: 4   TVAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 63

Query: 63  KLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDQTGDELLMLKPSRYGIEHKE 122
           KL  +TQYG HRWVEYA K RYNASQVP EWHGWLH+ITD TGDELL LKP RYG+EHKE
Sbjct: 64  KLG-DTQYGMHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKE 123

Query: 123 NFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           NFSGEG+  IYHSKGH LNPGQ++WTRYQSW PTK+
Sbjct: 124 NFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKT 158

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g06900.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9M9	9.9e-72	75.64	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabid...	[more]
Q9N2W7	4.2e-14	38.36	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Caenor...	[more]
Q54MV7	2.7e-13	44.87	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium d...	[more]
Q0MQ85	8.8e-12	41.49	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pongo pygmaeus ...	[more]
O97725	1.1e-11	37.39	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Bos taurus OX=9...	[more]

BLAST of Cp4.1LG05g06900.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534747.1	4.78e-120	100.00	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Cucurbit...	[more]
XP_022958111.1	7.94e-119	98.73	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Cucurbit...	[more]
XP_022996140.1	6.54e-118	98.10	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Cucurbit...	[more]
XP_004143640.2	3.78e-117	96.84	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Cucumis ...	[more]
XP_038875755.1	4.42e-116	95.57	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Benincas...	[more]

BLAST of Cp4.1LG05g06900.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H155	3.85e-119	98.73	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita mosch...	[more]
A0A6J1K5W7	3.16e-118	98.10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita maxim...	[more]
A0A0A0KNC9	1.83e-117	96.84	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis sativus...	[more]
A0A6J1ELZ2	1.76e-115	95.57	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita mosch...	[more]
A0A5A7ULJ6	3.56e-115	94.94	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis melo va...	[more]

BLAST of Cp4.1LG05g06900.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03100.1	7.0e-73	75.64	NADH:ubiquinone oxidoreductase, 17.2kDa subunit	[more]
AT3G03100.2	3.5e-72	75.00	NADH:ubiquinone oxidoreductase, 17.2kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007763	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	PFAM	PF05071	NDUFA12	coord: 49..155 e-value: 8.5E-26 score: 90.8
IPR007763	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	PANTHER	PTHR12910	NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.2	coord: 4..157
None	No IPR available	PANTHER	PTHR12910:SF10	NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 12	coord: 4..157

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG05g06900	Cp4.1LG05g06900	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g06900.1:five_prime_utr:001	Cp4.1LG05g06900.1:five_prime_utr:001	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g06900.1:exon:001	Cp4.1LG05g06900.1:exon:001	exon
Cp4.1LG05g06900.1:exon:002	Cp4.1LG05g06900.1:exon:002	exon
Cp4.1LG05g06900.1:exon:003	Cp4.1LG05g06900.1:exon:003	exon
Cp4.1LG05g06900.1:exon:004	Cp4.1LG05g06900.1:exon:004	exon
Cp4.1LG05g06900.1:exon:005	Cp4.1LG05g06900.1:exon:005	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g06900.1:cds:001	Cp4.1LG05g06900.1:cds:001	CDS
Cp4.1LG05g06900.1:cds:002	Cp4.1LG05g06900.1:cds:002	CDS
Cp4.1LG05g06900.1:cds:003	Cp4.1LG05g06900.1:cds:003	CDS
Cp4.1LG05g06900.1:cds:004	Cp4.1LG05g06900.1:cds:004	CDS
Cp4.1LG05g06900.1:cds:005	Cp4.1LG05g06900.1:cds:005	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g06900.1:three_prime_utr:001	Cp4.1LG05g06900.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g06900.1	Cp4.1LG05g06900.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0016020	membrane
cellular_component	GO:0005747	mitochondrial respiratory chain complex I