Cp4.1LG05g02890.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g02890.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Superoxide dismutase [Cu-Zn]
Location	Cp4.1LG05: 2231666 .. 2235398 (+)
Sequence length	1033
RNA-Seq Expression	Cp4.1LG05g02890.1
Synteny	Cp4.1LG05g02890.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGATGCATCAGATAAAAGCTTTTGCTGCAAAGTGGCACACATCTACTAGAAGCCTCCATTTTTCGTTATCCCTTCTCCATCGACAGTTCCCCATAGCAAATGCAAGCAGTTCTCGCAGCCATGGCGGCGCAATCCCTCATCTCTGCCTCCCCTTCCACCTACATCCAAGTGTCCCCCTTCTCAATTTCTTCCCCTCCGCCTTCCCTAATCTCCTCCTTCCATGGCGCCTCTCTCAAGCTACCTCGCCACTCCCTCTCCCTAGCAGCCTCCGTCGCCCCCAAGCCTTTTGTTGTCGTTGCCGCTACAAAGAAAGCCGTCGCCGTTCTCAAGGGTACTTCCAATGTTGAAGGCGTCGTCACGCTGACCCAAGAAGACGATGGTCTGTACACACTCTATCAATAGCTCTTTTGCCTCATCGTATCGTAGTGGGTTTCTCGTAGTTTAGGATTGAGGGTTCGAATCGATATTTGGTATTTGATTTATGGGGGATTGAATTAAATGGCTGGGGTAATTGGAGTTGCCGTGGGGATTTTGAGGTTTATTTGGCGCCTAATTTCGAAGATTGACGTTGACTTTATTTGGAATGTGATTGAGCTTAGTGGAGTTTTTTTAATTTCTGCCTGCGTTGCTTTCTTCTTGACTGTTCTGTTATTTTTTGTCATAATGTATTAGTATGCGCGTAAGTTGACTTTTAAAAATAAACGAATATGATTGTTTTGATTTTATGATGTTTACTTCTCGTAGGATTCTGTTGTCTTGTTGGCCTGTACACTATGATTATTCTAGAACCAAAAAGCTTTTGAGGGCACATCCCCTTCAGAAAATTTCAACTATTAAGGCAATAATACTGTTAGGATTATTGAGAGGAGTAGTCCCAAGTTGAGTAATTAAGAGAAAGATCATTGGTTTATAAGTAAGGAACACTATCTTCATTGAGTGAAGCCTTTTAGGGAAACTAAAAGCAAAACCATGAGAGCTTATGTGCAAAGTGGACAATATCATAGCATTGTGGAGGTTCGTGGTTTCTAACAATGACAACAATGACAACAATGACGATTAGAATGAAAATGATAATAGTAATAGTAGTTGCAATATTGTGATTCTGAAAAATGTTGTATTGTTTCTAGGTCCAACAACAGTAAATGTTCGTATTACCGGGCTCACGGAAGGGCTTCATGGATTCCATCTTGTAAGTAATTTGGCATTGACTGACATGATCTATGGGCTTGTTGTTTTAATCAATCTACCTTCTTGTTTCCTTCTGTAGCATGAGTATGGAGACACAACAAATGGATGCATTTCTACAGGTAGTGTATGATCCATTGTCCATATTTGATTTTGATCCTTCTGTACCAAGAAGTTTTATTCTATCTAGCGAGGTTGTATTTTTGTCTCTCTTCAATTGTTTATGTATGATTTTCAATTATAGGACCACATTTCAATCCTAATAAGTTAACTCATGGAGCTCCTGAGGACGAAATCCGTCATGCGGGTGACCTGGGAAACATTGTTGCCAAGGCTGATGGTATCTGCTTCTTCTTTCTGAAAGGTTCTTTTATTTTATGTTTCATGGATTTGTAACTTCTAATGCACCAATATATTGTTTCTTGATATACAGGAGTAGCGGAGGCAACCATTGTAGATAATCAGGTACCTCTATTCGATCCGTATCTGTCATCATCACAATCCATATGCTCAGAATTATTGCTGTCTTTCATCATGAATGGCATCGCAATAACTATAAATGTTGATGGTGGCAATGCCGCTGATAAAACTTCTTATATATATTGTACATGCATGTATTCATGACTGCAATTACCTTAGTATTGACAAGTTCAAAGGAAAAATTATGTTCAAGCCTTTATTTTAGATCTGCCCCTCTAACATACTCAGTTATTAATTCCTGATCTGTAGATTCCTCTCAGTGGCCCCAACTCCGTAGTTGGAAGAGCCTTTGTGGTACATGAGCTTGCGGATGATCTTGGAAAAGGTATGTTCTGTTCGTCGTTTCCATTTAGTTACATTTTTCACCTCCTTTTCGTTCCTTTTCATTTGATTAACCTACTCTAGCGATTTATCAAACAAACTAAAAGAATTGAAAATAAGTTAATTTATGTTCTTGTTATCTTAGCTTCAGTTGTGTTTAATAGAATAAAATGTAGTGCTATTAATTAAATTATGAGAAAAAAATATTTTAGTTCCCTTTTATAGATAGAACTGCAATATAGCTGCTGATAGCGATGTCTGCACCACTTACCCTCGGATTTTTTTTGCTTGACTATCAAAATTCAATATTTGTTCTCATTTCTTCTGGTTATGATTATGTAGGAGGTCATGAACTCAGTTCAACCACAGGCAACGCTGGTGGAAGATTGGCATGTGGTATGCAAACATAAACTTCTTTTTTCTTCTCTCTCAAGAGTCCCGTGTTCTTTTTTCCCCATGCATGCCATGGCATATATCTTTATAAGACTGCTTTGGTGATCAATTTGTTCGATTTAAATAGAATATATAAGTTATAAACATGGGTGAACTATTCGACTATTTAAATTCTTTCTTATATCTGGTGGGTTTCATTTCCTTTAATACTTTCCAGCGGATTTCATCCCTATCTCATATCATCCCAAAGAACAAGAATTTCAGATTTCAAACAATGTTCCATTTCCTCCTCCTCCTTCCCAATTTCATTAGTTAATATTGCAGAAAGAACAAAGTTATTACTTGTTCAAAAAGAACTAACTTGTTACTGGTGACTTGGTGGATGTTGAAGGCCTACGGTATACATTACTGAACTGATCTACCTTATTGAATACTGACTGACCTCTGGCTCTACGATGCAAGGAGATTCATAGCTTTATTTCAAATTCTCAGTCCTTATAATCATTTTGCTGTTGTGTATGCCTCATGCCCTGTGTGCTCTTTAATATGCAAGGAAGCTGAGTGAATACAGTATGCTTTAATTCAAATTCTCAGCTATGCATAGAGACCATGTGGTTTTCTTGTATATTTTATGAATTGCACGGCTTATTTCATTTATCAGACCCTTTGTGTAGGTAGATATGTGGTCTAAAAGTCTCTGCGCTGGCTATTGTTCTGATAGCCTGGCATGACATTTTTCCACCTTGTAGAAGTACTTTCAATAGAATCTAGTAACTTAGAAATGGGTTAATCAAGTTAAAATACTTCTGCTGAATGCATCAACATAGTTAACGTATAACTGTTCTAAACGCTTACATTAGCAGCTAATCAAACTGTCAACCTATTGCTTTGCTTGAGTGCCATGGTAGTAAACCACTGGCAATAGTAAAATCCAGACATTCCCTATTTGCTTCTAGATGCCTAAATATTGTCTTCTCAATGGTTTTTCATCCAGAATATGTGCTAACTGCTGATACAAGAGAATCTCAATCTTTTTTCTACCTATTTCTCGTCTTTGCAGGTGTCGTCGGGCTGACTCCCGTGTAATGGCAACATACGAACTGCTAGCCTACAAGGTCATGAGCTATACGGGCACTGTTGGCAGCTTGTTGTCACCCGCTTCTCCACAGGCATGAGTTTCTTTTCTCTTGCCTAGCACATATATTGCCTTGGGAAGACGGTTCAATTGTTTTCACGTTGATATCTGTTTTACTGTGGCTTCCATTAGTTGAATAAAATTGACTTGCTACTTCTGAGATATAATGATCTTCCTTTCACCTTGGCTGGATATCCCACCTCACTGCTTCTCTCCTCC

mRNA sequence

CGATGCATCAGATAAAAGCTTTTGCTGCAAAGTGGCACACATCTACTAGAAGCCTCCATTTTTCGTTATCCCTTCTCCATCGACAGTTCCCCATAGCAAATGCAAGCAGTTCTCGCAGCCATGGCGGCGCAATCCCTCATCTCTGCCTCCCCTTCCACCTACATCCAAGTGTCCCCCTTCTCAATTTCTTCCCCTCCGCCTTCCCTAATCTCCTCCTTCCATGGCGCCTCTCTCAAGCTACCTCGCCACTCCCTCTCCCTAGCAGCCTCCGTCGCCCCCAAGCCTTTTGTTGTCGTTGCCGCTACAAAGAAAGCCGTCGCCGTTCTCAAGGGTACTTCCAATGTTGAAGGCGTCGTCACGCTGACCCAAGAAGACGATGGTCCAACAACAGTAAATGTTCGTATTACCGGGCTCACGGAAGGGCTTCATGGATTCCATCTTCATGAGTATGGAGACACAACAAATGGATGCATTTCTACAGGACCACATTTCAATCCTAATAAGTTAACTCATGGAGCTCCTGAGGACGAAATCCGTCATGCGGGTGACCTGGGAAACATTGTTGCCAAGGCTGATGGAGTAGCGGAGGCAACCATTGTAGATAATCAGATTCCTCTCAGTGGCCCCAACTCCGTAGTTGGAAGAGCCTTTGTGGTACATGAGCTTGCGGATGATCTTGGAAAAGGAGGTCATGAACTCAGTTCAACCACAGGCAACGCTGGTGGAAGATTGGCATGTGGTGTCGTCGGGCTGACTCCCGTGTAATGGCAACATACGAACTGCTAGCCTACAAGGTCATGAGCTATACGGGCACTGTTGGCAGCTTGTTGTCACCCGCTTCTCCACAGGCATGAGTTTCTTTTCTCTTGCCTAGCACATATATTGCCTTGGGAAGACGGTTCAATTGTTTTCACGTTGATATCTGTTTTACTGTGGCTTCCATTAGTTGAATAAAATTGACTTGCTACTTCTGAGATATAATGATCTTCCTTTCACCTTGGCTGGATATCCCACCTCACTGCTTCTCTCCTCC

Coding sequence (CDS)

ATGCAAGCAGTTCTCGCAGCCATGGCGGCGCAATCCCTCATCTCTGCCTCCCCTTCCACCTACATCCAAGTGTCCCCCTTCTCAATTTCTTCCCCTCCGCCTTCCCTAATCTCCTCCTTCCATGGCGCCTCTCTCAAGCTACCTCGCCACTCCCTCTCCCTAGCAGCCTCCGTCGCCCCCAAGCCTTTTGTTGTCGTTGCCGCTACAAAGAAAGCCGTCGCCGTTCTCAAGGGTACTTCCAATGTTGAAGGCGTCGTCACGCTGACCCAAGAAGACGATGGTCCAACAACAGTAAATGTTCGTATTACCGGGCTCACGGAAGGGCTTCATGGATTCCATCTTCATGAGTATGGAGACACAACAAATGGATGCATTTCTACAGGACCACATTTCAATCCTAATAAGTTAACTCATGGAGCTCCTGAGGACGAAATCCGTCATGCGGGTGACCTGGGAAACATTGTTGCCAAGGCTGATGGAGTAGCGGAGGCAACCATTGTAGATAATCAGATTCCTCTCAGTGGCCCCAACTCCGTAGTTGGAAGAGCCTTTGTGGTACATGAGCTTGCGGATGATCTTGGAAAAGGAGGTCATGAACTCAGTTCAACCACAGGCAACGCTGGTGGAAGATTGGCATGTGGTGTCGTCGGGCTGACTCCCGTGTAA

Protein sequence

MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV

Homology

[Close]

BLAST of Cp4.1LG05g02890.1 vs. ExPASy Swiss-Prot
Match: P07505 (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea OX=3562 GN=SODCP PE=1 SV=2)

HSP 1 Score: 314.7 bits (805), Expect = 8.3e-85
Identity = 169/223 (75.78%), Postives = 188/223 (84.30%), Query Frame = 0


Query: 8   MAAQSLISASPS--TYIQVSPFSISSPPPSL-----ISSFHGASLKL--PRHSLSLAASV 67
           MAA ++++++PS  T+  +SPFS S+P  +L      SSF+G S KL     SLSL+ S 
Sbjct: 1   MAAHTILASAPSHTTFSLISPFS-STPTNALSSSLQSSSFNGLSFKLSPTTQSLSLSTSA 60

Query: 68  APKPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYG 127
           A KP  +VAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRI+GL  G HGFHLHE+G
Sbjct: 61  ASKPLTIVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFG 120

Query: 128 DTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNS 187
           DTTNGC+STGPHFNP+K THGAPEDE+RHAGDLGNIVA  DGVAEATIVDNQIPL+GPNS
Sbjct: 121 DTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNS 180

Query: 188 VVGRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           VVGRA VVHEL DDLGKGGHELS TTGNAGGRLACGVVGLTPV
Sbjct: 181 VVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGLTPV 222

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BLAST of Cp4.1LG05g02890.1 vs. ExPASy Swiss-Prot
Match: P10792 (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida OX=4102 GN=SODCP PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 9.2e-84
Identity = 163/219 (74.43%), Postives = 183/219 (83.56%), Query Frame = 0


Query: 8   MAAQSLISASPSTYIQVSPFSIS--SPPPSLISSFHGASLKLPR---HSLSLAASVAPKP 67
           MAA ++ + + +T   + P + S  +  PSL SSFHG SLK+      SL+L++  +PKP
Sbjct: 1   MAAHTIFTTTSTTNSFLFPIASSNTNSAPSLSSSFHGVSLKVKSKTPQSLTLSSVTSPKP 60

Query: 68  FVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTN 127
           F+V AATKKAVAVLKGTSNVEGVVTLTQ+DDGPTTV VRITGL  GLHGFHLHE+GDTTN
Sbjct: 61  FIVFAATKKAVAVLKGTSNVEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTN 120

Query: 128 GCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGR 187
           GC+STGPHFNPN LTHGAP DE+RHAGDLGNI A A GVAEAT+VDNQIPLSGPNSVVGR
Sbjct: 121 GCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGR 180

Query: 188 AFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           A VVHEL DDLGKGGHELS TTGNAGGRLACGVVGLTP+
Sbjct: 181 ALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 219

[Close]

BLAST of Cp4.1LG05g02890.1 vs. ExPASy Swiss-Prot
Match: O65199 (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera OX=29760 GN=SODCP PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 9.2e-84
Identity = 160/214 (74.77%), Postives = 178/214 (83.18%), Query Frame = 0


Query: 8   MAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVA 67
           MA  +L+S +PS      P    +P P L S FHG SLKL R S+ LA   APKP  VVA
Sbjct: 1   MAVNTLLSTAPSRVFLSFPNPSPNPSPQLHSQFHGLSLKLTRQSIPLA--TAPKPLSVVA 60

Query: 68  ATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCIST 127
            TKKAVAVLKGTS+VEGVVTL+QEDDGPTTV+VRITGLT G HGFHLHE+GDTTNGC+ST
Sbjct: 61  VTKKAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMST 120

Query: 128 GPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVH 187
           G HFNPN +THGAPED++RHAGDLGNI+A A+GVAEATIVD QIPLSGPN+V+GRA VVH
Sbjct: 121 GAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVH 180

Query: 188 ELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           EL DDLGKGGHELS TTGNAGGRLACGVVGLTP+
Sbjct: 181 ELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 212

[Close]

BLAST of Cp4.1LG05g02890.1 vs. ExPASy Swiss-Prot
Match: O04997 (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra OX=59294 GN=SODCP PE=2 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.2e-83
Identity = 169/221 (76.47%), Postives = 187/221 (84.62%), Query Frame = 0


Query: 8   MAAQSLISASPSTYIQVSPFSISSPPPSL---ISSFHGASLK--LPRHSLSL--AASVAP 67
           MAA  ++ +SP+    +  F IS+P  ++    SSFHG SLK  + R SL+L  AAS AP
Sbjct: 1   MAAHCILFSSPAATTSLI-FPISNPNTAVSLPSSSFHGVSLKSTINRQSLTLSAAASAAP 60

Query: 68  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 127
           KP  V AATKKAVAVLKGTS+VEGVVTLTQE+DGPTTVNV+ITGLT G HGFHLHE+GDT
Sbjct: 61  KPLTVFAATKKAVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDT 120

Query: 128 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 187
           TNGCISTGPHFNPN  THGAPEDE RHAGDLGNI+A ADGVAEATIVDNQIPL+GPN+VV
Sbjct: 121 TNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVV 180

Query: 188 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           GRAFVVHELADDLGKGGHELS +TGNAGGRLACGVVGLTPV
Sbjct: 181 GRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGLTPV 220

[Close]

BLAST of Cp4.1LG05g02890.1 vs. ExPASy Swiss-Prot
Match: P14831 (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum OX=4081 GN=SODCP.2 PE=1 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 3.5e-83
Identity = 163/217 (75.12%), Postives = 178/217 (82.03%), Query Frame = 0


Query: 8   MAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPR---HSLSLAASVAPKPFV 67
           MAA S+ + + +T   + P S SS  P++ SSF G SL +      SL+L A   PKP  
Sbjct: 1   MAAHSIFTTTSTTNSFLYPISSSSSSPNINSSFLGVSLNVNAKFGQSLTLYAVTTPKPLT 60

Query: 68  VVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGC 127
           V AATKKAVAVLKG SNVEGVVTL+Q+DDGPTTVNVRITGL  GLHGFHLHEYGDTTNGC
Sbjct: 61  VFAATKKAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGC 120

Query: 128 ISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAF 187
           +STG HFNPNKLTHGAP DEIRHAGDLGNIVA ADGVAE T+VDNQIPL+GPNSVVGRA 
Sbjct: 121 MSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRAL 180

Query: 188 VVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           VVHEL DDLGKGGHELS TTGNAGGRLACGVVGLTP+
Sbjct: 181 VVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 217

[Close]

BLAST of Cp4.1LG05g02890.1 vs. NCBI nr
Match: XP_023534101.1 (superoxide dismutase [Cu-Zn], chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 422 bits (1084), Expect = 1.87e-148
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60
           MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP
Sbjct: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60

Query: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120
           KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT
Sbjct: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120

Query: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180
           TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV
Sbjct: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180

Query: 181 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221
           GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV
Sbjct: 181 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221

[Close]

BLAST of Cp4.1LG05g02890.1 vs. NCBI nr
Match: AWW05327.1 (superoxide dismutase [Cu-Zn] 1 [Cucurbita pepo])

HSP 1 Score: 421 bits (1081), Expect = 5.36e-148
Identity = 220/221 (99.55%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60
           MQAVLAAMAAQSLISASPSTYIQVSPFSIS+PPPSLISSFHGASLKLPRHSLSLAASVAP
Sbjct: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISAPPPSLISSFHGASLKLPRHSLSLAASVAP 60

Query: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120
           KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT
Sbjct: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120

Query: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180
           TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV
Sbjct: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180

Query: 181 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221
           GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV
Sbjct: 181 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221

[Close]

BLAST of Cp4.1LG05g02890.1 vs. NCBI nr
Match: XP_022958658.1 (superoxide dismutase [Cu-Zn], chloroplastic [Cucurbita moschata] >XP_022996071.1 superoxide dismutase [Cu-Zn], chloroplastic [Cucurbita maxima] >KAG6606030.1 Superoxide dismutase [Cu-Zn], chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 418 bits (1075), Expect = 4.40e-147
Identity = 219/221 (99.10%), Postives = 220/221 (99.55%), Query Frame = 0


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60
           MQAVLAAMAAQSLISASPS+YIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP
Sbjct: 1   MQAVLAAMAAQSLISASPSSYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60

Query: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120
           KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT
Sbjct: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120

Query: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180
           TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV
Sbjct: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180

Query: 181 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221
           GRAFVVHEL DDLGKGGHELSSTTGNAGGRLACGVVGLTPV
Sbjct: 181 GRAFVVHELEDDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221

[Close]

BLAST of Cp4.1LG05g02890.1 vs. NCBI nr
Match: APO14279.1 (superoxide dismutase 3 [Luffa aegyptiaca])

HSP 1 Score: 389 bits (998), Expect = 2.40e-135
Identity = 203/221 (91.86%), Postives = 208/221 (94.12%), Query Frame = 0


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60
           MQA+LAAMAAQ+LISASPS YI + PFS SSPPPSL SSFHGASLKLPRHSLSLAAS AP
Sbjct: 1   MQALLAAMAAQTLISASPSHYIALPPFSNSSPPPSLTSSFHGASLKLPRHSLSLAASAAP 60

Query: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120
           KP  VVAATKKAVAVLKGTSNV+GVVTLTQEDDGPTTVNVR+TGL EGLHGFHLHEYGDT
Sbjct: 61  KPLAVVAATKKAVAVLKGTSNVDGVVTLTQEDDGPTTVNVRVTGLAEGLHGFHLHEYGDT 120

Query: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180
           TNGCISTG HFNPNKLTHGAPEDEIRHAGDLGNIVA ADGVAEATIVDNQIPLSGPNSVV
Sbjct: 121 TNGCISTGAHFNPNKLTHGAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNSVV 180

Query: 181 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221
           GRAFVVHEL DDLGKGGHELS TTGNAGGRLACGVVGLTPV
Sbjct: 181 GRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 221

[Close]

BLAST of Cp4.1LG05g02890.1 vs. NCBI nr
Match: XP_038902141.1 (superoxide dismutase [Cu-Zn], chloroplastic [Benincasa hispida])

HSP 1 Score: 383 bits (983), Expect = 4.64e-133
Identity = 201/221 (90.95%), Postives = 206/221 (93.21%), Query Frame = 0


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60
           MQA+LAAMAAQSL+S SPS YI + PFS SS PPS  SSFHGASLKLPRHSLSLAASVAP
Sbjct: 1   MQAILAAMAAQSLLSVSPSHYIPLPPFSNSSSPPSPSSSFHGASLKLPRHSLSLAASVAP 60

Query: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120
           KP  VVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVR+TGLTEGLHGFHLHEYGDT
Sbjct: 61  KPLAVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRVTGLTEGLHGFHLHEYGDT 120

Query: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180
           TNGCISTG HFNPNKLTHGAPEDEIRHAGDLGNI+A A GVAEATIVDNQIPLSGPNSVV
Sbjct: 121 TNGCISTGAHFNPNKLTHGAPEDEIRHAGDLGNIIANAVGVAEATIVDNQIPLSGPNSVV 180

Query: 181 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221
           GRAFVVHEL DDLGKGGHELS TTGNAGGRLACGVVGLTPV
Sbjct: 181 GRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 221

[Close]

BLAST of Cp4.1LG05g02890.1 vs. ExPASy TrEMBL
Match: A0A2Z4GT64 (Superoxide dismutase [Cu-Zn] OS=Cucurbita pepo OX=3663 PE=2 SV=1)

HSP 1 Score: 421 bits (1081), Expect = 2.60e-148
Identity = 220/221 (99.55%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60
           MQAVLAAMAAQSLISASPSTYIQVSPFSIS+PPPSLISSFHGASLKLPRHSLSLAASVAP
Sbjct: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISAPPPSLISSFHGASLKLPRHSLSLAASVAP 60

Query: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120
           KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT
Sbjct: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120

Query: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180
           TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV
Sbjct: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180

Query: 181 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221
           GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV
Sbjct: 181 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221

[Close]

BLAST of Cp4.1LG05g02890.1 vs. ExPASy TrEMBL
Match: A0A6J1K3P0 (Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111491386 PE=3 SV=1)

HSP 1 Score: 418 bits (1075), Expect = 2.13e-147
Identity = 219/221 (99.10%), Postives = 220/221 (99.55%), Query Frame = 0


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60
           MQAVLAAMAAQSLISASPS+YIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP
Sbjct: 1   MQAVLAAMAAQSLISASPSSYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60

Query: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120
           KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT
Sbjct: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120

Query: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180
           TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV
Sbjct: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180

Query: 181 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221
           GRAFVVHEL DDLGKGGHELSSTTGNAGGRLACGVVGLTPV
Sbjct: 181 GRAFVVHELEDDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221

[Close]

BLAST of Cp4.1LG05g02890.1 vs. ExPASy TrEMBL
Match: A0A6J1H3P6 (Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111459815 PE=3 SV=1)

HSP 1 Score: 418 bits (1075), Expect = 2.13e-147
Identity = 219/221 (99.10%), Postives = 220/221 (99.55%), Query Frame = 0


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60
           MQAVLAAMAAQSLISASPS+YIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP
Sbjct: 1   MQAVLAAMAAQSLISASPSSYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60

Query: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120
           KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT
Sbjct: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120

Query: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180
           TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV
Sbjct: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180

Query: 181 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221
           GRAFVVHEL DDLGKGGHELSSTTGNAGGRLACGVVGLTPV
Sbjct: 181 GRAFVVHELEDDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221

[Close]

BLAST of Cp4.1LG05g02890.1 vs. ExPASy TrEMBL
Match: A0A1L5JHV7 (Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 389 bits (998), Expect = 1.16e-135
Identity = 203/221 (91.86%), Postives = 208/221 (94.12%), Query Frame = 0


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60
           MQA+LAAMAAQ+LISASPS YI + PFS SSPPPSL SSFHGASLKLPRHSLSLAAS AP
Sbjct: 1   MQALLAAMAAQTLISASPSHYIALPPFSNSSPPPSLTSSFHGASLKLPRHSLSLAASAAP 60

Query: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120
           KP  VVAATKKAVAVLKGTSNV+GVVTLTQEDDGPTTVNVR+TGL EGLHGFHLHEYGDT
Sbjct: 61  KPLAVVAATKKAVAVLKGTSNVDGVVTLTQEDDGPTTVNVRVTGLAEGLHGFHLHEYGDT 120

Query: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180
           TNGCISTG HFNPNKLTHGAPEDEIRHAGDLGNIVA ADGVAEATIVDNQIPLSGPNSVV
Sbjct: 121 TNGCISTGAHFNPNKLTHGAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNSVV 180

Query: 181 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221
           GRAFVVHEL DDLGKGGHELS TTGNAGGRLACGVVGLTPV
Sbjct: 181 GRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 221

[Close]

BLAST of Cp4.1LG05g02890.1 vs. ExPASy TrEMBL
Match: A0A6J1CH19 (Superoxide dismutase [Cu-Zn] OS=Momordica charantia OX=3673 GN=LOC111011351 PE=3 SV=1)

HSP 1 Score: 372 bits (955), Expect = 4.46e-129
Identity = 198/223 (88.79%), Postives = 203/223 (91.03%), Query Frame = 0


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASL--KLPRHSLSLAASV 60
           MQAVLA MAAQS+ISASPS YI + PFS  +PPPSL SSFHGASL  K PRHSLSLAAS 
Sbjct: 1   MQAVLAVMAAQSVISASPSHYIALFPFSNPAPPPSLHSSFHGASLNLKFPRHSLSLAASA 60

Query: 61  APKPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYG 120
           APKP  VVAATKKAVAVLKG S VEGVVTLTQ+DDGPTTVNVRITGL EGLHGFHLHEYG
Sbjct: 61  APKPLAVVAATKKAVAVLKGNSVVEGVVTLTQDDDGPTTVNVRITGLAEGLHGFHLHEYG 120

Query: 121 DTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNS 180
           DTTNGCISTG HFNPNKLTHGAPEDEIRHAGDLGNI+A ADGVAEATIVDNQIPLSGPNS
Sbjct: 121 DTTNGCISTGAHFNPNKLTHGAPEDEIRHAGDLGNIIANADGVAEATIVDNQIPLSGPNS 180

Query: 181 VVGRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 221
           VVGRAFVVHEL DDLGKGGHELS TTGNAGGRLACGVVGLTPV
Sbjct: 181 VVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 223

[Close]

BLAST of Cp4.1LG05g02890.1 vs. TAIR 10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2 )

HSP 1 Score: 292.4 bits (747), Expect = 3.2e-79
Identity = 157/217 (72.35%), Postives = 174/217 (80.18%), Query Frame = 0


Query: 9   AAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASL---KLPR-HSLSLAASVAPKPFV 68
           A  ++++ S  + + + P   SS P +L SSF G SL    L R  S+S A     K   
Sbjct: 3   ATNTILAFSSPSRLLIPP---SSNPSTLRSSFRGVSLNNNNLHRLQSVSFAVKAPSKALT 62

Query: 69  VVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGC 128
           VV+A KKAVAVLKGTS+VEGVVTLTQ+D GPTTVNVRITGLT G HGFHLHE+GDTTNGC
Sbjct: 63  VVSAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGC 122

Query: 129 ISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAF 188
           ISTGPHFNPN +THGAPEDE RHAGDLGNI A ADGVAE TIVDNQIPL+GPNSVVGRAF
Sbjct: 123 ISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAF 182

Query: 189 VVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           VVHEL DDLGKGGHELS TTGNAGGRLACGV+GLTP+
Sbjct: 183 VVHELKDDLGKGGHELSLTTGNAGGRLACGVIGLTPL 216

[Close]

BLAST of Cp4.1LG05g02890.1 vs. TAIR 10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 204.5 bits (519), Expect = 8.6e-53
Identity = 99/148 (66.89%), Postives = 112/148 (75.68%), Query Frame = 0


Query: 71  KAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCISTGPH 130
           K VAVL  +  V G +  TQE DG TTV+  ++GL  GLHGFH+H  GDTTNGC+STGPH
Sbjct: 3   KGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62

Query: 131 FNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELA 190
           FNP+  THGAPED  RHAGDLGNI    DG A  TI D QIPL+GPNS+VGRA VVH   
Sbjct: 63  FNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADP 122

Query: 191 DDLGKGGHELSSTTGNAGGRLACGVVGL 219
           DDLGKGGHELS  TGNAGGR+ACG++GL
Sbjct: 123 DDLGKGGHELSLATGNAGGRVACGIIGL 150

[Close]

BLAST of Cp4.1LG05g02890.1 vs. TAIR 10
Match: AT1G08830.2 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 204.5 bits (519), Expect = 8.6e-53
Identity = 99/148 (66.89%), Postives = 112/148 (75.68%), Query Frame = 0


Query: 71  KAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCISTGPH 130
           K VAVL  +  V G +  TQE DG TTV+  ++GL  GLHGFH+H  GDTTNGC+STGPH
Sbjct: 3   KGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62

Query: 131 FNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELA 190
           FNP+  THGAPED  RHAGDLGNI    DG A  TI D QIPL+GPNS+VGRA VVH   
Sbjct: 63  FNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADP 122

Query: 191 DDLGKGGHELSSTTGNAGGRLACGVVGL 219
           DDLGKGGHELS  TGNAGGR+ACG++GL
Sbjct: 123 DDLGKGGHELSLATGNAGGRVACGIIGL 150

[Close]

BLAST of Cp4.1LG05g02890.1 vs. TAIR 10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 187.2 bits (474), Expect = 1.4e-47
Identity = 88/148 (59.46%), Postives = 110/148 (74.32%), Query Frame = 0


Query: 71  KAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCISTGPH 130
           +AVA++ G +NV G +   Q+  G T V  +I+GL+ G HGFH+H +GDTTNGCISTGPH
Sbjct: 9   RAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPH 68

Query: 131 FNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELA 190
           FNP    HG P +E RHAGDLGNI+A ++GVAE  I D  IPLSG  S++GRA VVH   
Sbjct: 69  FNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADP 128

Query: 191 DDLGKGGHELSSTTGNAGGRLACGVVGL 219
           DDLGKGGH+LS +TGNAG R+ CG++GL
Sbjct: 129 DDLGKGGHKLSKSTGNAGSRVGCGIIGL 156

[Close]

BLAST of Cp4.1LG05g02890.1 vs. TAIR 10
Match: AT5G18100.2 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-37
Identity = 74/126 (58.73%), Postives = 91/126 (72.22%), Query Frame = 0


Query: 71  KAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCISTGPH 130
           +AVA++ G +NV G +   Q+  G T V  +I+GL+ G HGFH+H +GDTTNGCISTGPH
Sbjct: 9   RAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPH 68

Query: 131 FNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELA 190
           FNP    HG P +E RHAGDLGNI+A ++GVAE  I D  IPLSG  S++GRA VVH   
Sbjct: 69  FNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADP 128

Query: 191 DDLGKG 197
           DDLGKG
Sbjct: 129 DDLGKG 134

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g02890.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P07505	8.3e-85	75.78	Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea OX=3562 GN=SODC...	[more]
P10792	9.2e-84	74.43	Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida OX=4102 GN=SODCP ...	[more]
O65199	9.2e-84	74.77	Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera OX=29760 GN=SODCP ...	[more]
O04997	1.2e-83	76.47	Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra O...	[more]
P14831	3.5e-83	75.12	Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum OX=4081 GN=S...	[more]

BLAST of Cp4.1LG05g02890.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534101.1	1.87e-148	100.00	superoxide dismutase [Cu-Zn], chloroplastic [Cucurbita pepo subsp. pepo]	[more]
AWW05327.1	5.36e-148	99.55	superoxide dismutase [Cu-Zn] 1 [Cucurbita pepo]	[more]
XP_022958658.1	4.40e-147	99.10	superoxide dismutase [Cu-Zn], chloroplastic [Cucurbita moschata] >XP_022996071.1...	[more]
APO14279.1	2.40e-135	91.86	superoxide dismutase 3 [Luffa aegyptiaca]	[more]
XP_038902141.1	4.64e-133	90.95	superoxide dismutase [Cu-Zn], chloroplastic [Benincasa hispida]	[more]

BLAST of Cp4.1LG05g02890.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2Z4GT64	2.60e-148	99.55	Superoxide dismutase [Cu-Zn] OS=Cucurbita pepo OX=3663 PE=2 SV=1	[more]
A0A6J1K3P0	2.13e-147	99.10	Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111491386 PE=3 SV...	[more]
A0A6J1H3P6	2.13e-147	99.10	Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111459815 PE=3 ...	[more]
A0A1L5JHV7	1.16e-135	91.86	Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca OX=3670 PE=2 SV=1	[more]
A0A6J1CH19	4.46e-129	88.79	Superoxide dismutase [Cu-Zn] OS=Momordica charantia OX=3673 GN=LOC111011351 PE=3...	[more]

BLAST of Cp4.1LG05g02890.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28190.1	3.2e-79	72.35	copper/zinc superoxide dismutase 2	[more]
AT1G08830.1	8.6e-53	66.89	copper/zinc superoxide dismutase 1	[more]
AT1G08830.2	8.6e-53	66.89	copper/zinc superoxide dismutase 1	[more]
AT5G18100.1	1.4e-47	59.46	copper/zinc superoxide dismutase 3	[more]
AT5G18100.2	1.0e-37	58.73	copper/zinc superoxide dismutase 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 191..217 score: 75.3 coord: 166..188 score: 60.6 coord: 147..156 score: 76.39 coord: 111..133 score: 77.32
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 79..216 e-value: 1.7E-45 score: 154.6
IPR001424	Superoxide dismutase, copper/zinc binding domain	CDD	cd00305	Cu-Zn_Superoxide_Dismutase	coord: 70..213 e-value: 1.2664E-62 score: 189.779
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	GENE3D	2.60.40.200	Superoxide dismutase, copper/zinc binding domain	coord: 66..220 e-value: 1.3E-64 score: 219.0
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	SUPERFAMILY	49329	Cu,Zn superoxide dismutase-like	coord: 71..218
None	No IPR available	PANTHER	PTHR10003:SF79	SUPEROXIDE DISMUTASE [CU-ZN] 1	coord: 69..219
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 69..219
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00332	SOD_CU_ZN_2	coord: 205..216
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00087	SOD_CU_ZN_1	coord: 111..121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG05g02890	Cp4.1LG05g02890	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g02890.1:five_prime_utr:001	Cp4.1LG05g02890.1:five_prime_utr:001	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g02890.1:exon:001	Cp4.1LG05g02890.1:exon:001	exon
Cp4.1LG05g02890.1:exon:002	Cp4.1LG05g02890.1:exon:002	exon
Cp4.1LG05g02890.1:exon:003	Cp4.1LG05g02890.1:exon:003	exon
Cp4.1LG05g02890.1:exon:004	Cp4.1LG05g02890.1:exon:004	exon
Cp4.1LG05g02890.1:exon:005	Cp4.1LG05g02890.1:exon:005	exon
Cp4.1LG05g02890.1:exon:006	Cp4.1LG05g02890.1:exon:006	exon
Cp4.1LG05g02890.1:exon:007	Cp4.1LG05g02890.1:exon:007	exon
Cp4.1LG05g02890.1:exon:008	Cp4.1LG05g02890.1:exon:008	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g02890.1:cds:008	Cp4.1LG05g02890.1:cds:008	CDS
Cp4.1LG05g02890.1:cds:007	Cp4.1LG05g02890.1:cds:007	CDS
Cp4.1LG05g02890.1:cds:006	Cp4.1LG05g02890.1:cds:006	CDS
Cp4.1LG05g02890.1:cds:005	Cp4.1LG05g02890.1:cds:005	CDS
Cp4.1LG05g02890.1:cds:004	Cp4.1LG05g02890.1:cds:004	CDS
Cp4.1LG05g02890.1:cds:003	Cp4.1LG05g02890.1:cds:003	CDS
Cp4.1LG05g02890.1:cds:002	Cp4.1LG05g02890.1:cds:002	CDS
Cp4.1LG05g02890.1:cds:001	Cp4.1LG05g02890.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g02890.1:three_prime_utr:001	Cp4.1LG05g02890.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g02890.1	Cp4.1LG05g02890.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006801	superoxide metabolic process
biological_process	GO:0019430	removal of superoxide radicals
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0004784	superoxide dismutase activity