Cp4.1LG05g00660.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAGAGAGGGAGAGGAACTCGCCGGAGCAGGTTTTATGAGTGGTGAGTTTATAAGCGAGGATGAGAAGACCAGCCGCGTGAATGGTTTCACTCGCGATGAACAAGTAATTATGATTCGTAACCGTGTGCTTCAAAACAAACATCGCAGCCACCGCCGCCGCCACCGCAAGACCGATCTTCGACGCCGTGGATCTCCGCCTCAGCCAATCGCCCGCGGCCTGGAACGCTCTCCTCCTATTCGGACGCCTCTTCGACTCATCGCCGTCGCTCGTGGTCGGAACCCTACCGGAACCGAAACTGATCGGGTAAGAACCTAACGCTTCCATCTACAGAGAGAGAGGGAGAAAATTGAATCGATGAATCGATTGAGAGAAAAAAAGAGAGAGAACAGAGGCGTTTTTTTTTTGTTAGGGCAAAATTGGGGATGATTTGTGGTGAAATTGATTTGACCATTGATTCAACGCCACTGAAACGGTTACCAAATATGGATGAATGAAGAATGAATTAATTGAAAATCCTTACAGATTTGGTGGATGAAATGGTCCGGATTTGTTCTTAAATGTTGAAAATCCGACGATCTGATGGCGGTAGTGTTCGTCGGAATGTGGACTCCGCTGCTGCCGTTTTCAATTGTTTTCTTTGATTTACTTATTTTTTTCTCCTCCAATGTAATGTTTAAATCGTGTTTTTAATTTTAGTTTTAATCCTATTTTGGTATATTCTGTCTTTGCCATTGATTTTAAAGCTGCCTATTTTAGTTTATGATTAAAAATATCAATGGTTTTAGTTCAAATTTTAGTTATTTGTTTTTATTGTTTTTTTTTTTTTTTTGTTAAATTTTAATTTTAATGTCGGACACACATTTAGATGTTTATTTAACCTACTGAGGGACAGAGTGAAAAAATATTTTCTATCTGATAGCTAAATAAAACAGGAGACGGGATTATATTTTCCATCGACCATCTCTTTTCCGCCCATTTCGACCTATTTTTTTATATATATATACCAAATAAAATATTATACTTTAAGATTAAAATTTGAATTATTGGTATTATATATATATATATATATTTTTTTTTTTCTTATAAAATATTATTGTTTAATAGAAATTATTATTAAAAATGAAATTGATTCCTTGAAAGAATCTTTGAAATTAATATATTTTTTAAGAATATATATAAAAAGAAGAAAAAAGAAGGCTTCCTCGTTTAGTTGACTTTTATAGTGTTCTTCCTTCCTCTGCCTCCCCTTCAGCTTGCTTCCTCCTCTCTCCTTCCCCGACAATGTCGCCGTCGCCGTCGCCGTTGCACCACCTTCTTCCACGGCCGCCGTCGATGACACCCTTACAGGAACTCCAGTGTCAGGTTGTTTGGAACTGTCCGAAACCATGGGCGGTTTTCCGTCAACCCAATACCACAATCCGTCCTCCTAAAACTGGCTGCTCTTCACTTTCTCTCTCCACTCGATCCCATAAACCCACTGTTCTCCTCTGTCTTTAGATTAGAATTCTTCAAATTTCTAGGCAATTCTGTTTCTGGGTTTGGTTCTGTTTCCGGAACTAGTAACAGCGAACAGAGAGATTTGGGGGTGGTTTTAATGGGAATTAGTAGTTTAGGCGGCGGCGGTGGGTGGAGTTATCGGTGGTGGAGGGAGGTTTTCCGGGATGAATTTGGCAATGTTGAGATTGGATTTACCGCTTCATTAAATCCCACGAATCCCCGAAATACTCACCAAATACACCACCCTTTTACGGTGTCTTATGTCCCACGCGATCCCCACCACCACAAACAACCGCTTCCGGCCGCCATGAAATACACTTATCCGGCGAAACCAAAGCTGAAGCAGTCGAATCTGAGCGACGACGAGAAGCAGGGGATCACGGCAGATAGCGACAACTGCGATGGAAAGAAGTAAATCTCGCCGTGAAAGAGGATGAAATGGATGGACATTATAGTCCGACTGCTAATCATGGCGGTTACATCGGTGACGAAGGTGGGTCGGAGCCAGCGGACCACACCGGCAAGCAGAAACCGGTGGGGCTTCTGCAGAAGAATGAAATCAGTTTCCAGAGCGACGATGGCAAAAAAATTTCTGTTTCGGCGGTTTCCAGTGGCATCACCGATGGTGACAGGGGAAGGAGGCGGCGCAACGGCGACAACGACGGCGAGATTGCTGTAGAAGGGGAAGTTAACTGCCACGTCATTTTTCGTCAATCAACGGTCAAAGGAGGTCCGGGCTATTTAGAACTAAAAATATTTTTTGTACTAATTTTTTGAGGGAAAGAAAAAAAGAAAAAAAAGAAAAAAAAGAAAAAAAAAAGAAAAAAAGGAATTTATAATTATCCGTACAAAATAATTAGAGGGAAATTTGTCAACTTTGGCGTCAACACATATTTTGCCGGCGAATCGCTTGAAATCACTATTCTTAAGGAAACGCCTCGATTTCTGTAATCCCATTTAACCAATTTTCTCTCTGTTCTTGATTGCCTGACCCTAAAAAAACCCCCCAAAGTTTCATTCATTATTGTCGCTTTGATTCCGTCGATCGGCGATGGGGCCGGGCTTCGTGGCCTTGTCTGGTGCTGCAAAACAGGCCGAGCTTCTCCGAAAAGATGGAAACCACTATTTTCAAAAAGGTAGAATCGGAGCCGCCATTGAAGCCTACACCGAGGTTTTTCTCTATCTCTCGATTTCTTTTCGTTTCTAGTTGCTATTTTGGTTTTGTCAGAATTTGCAGGTAGAACGTTTGGTTGTATTGGATTCTGTAGTTTTATTTGTGTTCGTTGATTTTGGGATGTTCTTGTTGTTTGGACTTGAAGGCGATTACGCTATGCCCGAATGTTGCTGTGTATTTGACGAACCGCGCTTTGTGTCATCGCAAGCGGAAGTATGTACGGGCACCAACCCTAGTTCCTTTCAATTTCTTCATTTTTACATTGTTTCTCTTCTTTTTTACATTGGATTACTTTTTTCTTCTGGTATATAGTGATTGGAAGAAGGTGGAGGAGGATTGCCGGAGAGCCATTCAGATTGATAGCAATTCTGTGAAGGTATTGCTTTAATGTTGAGCGTGATATCAATTCAGCCTCCCCTGCTGCCTCCAACTTATTTACAGTTTTCTTATGCATTTGTCTTATCTTGAATTCTTGATCGATGATCCTTCCTTCTCTATTTCTTTGTATATCACATTTGTTGACAATTTTTTGATGTGCAGGGACATTATATGTTAGGCCTAGCATTAATACAAAATAATGTATATCCAGAAGGAATCAAGCATTTGGAGAAGGTAACTTTTGATTTTTGTATTGTACCCTCTTTTATCCTTTTCATTTGGATACAAAACAATTGATTTCTACGTAGAGATGAAATTGAGTAGAAGATTGGATTGGAGATTCATTTGAATTATGGATTGCACAAATAACTTTTGAAAACTTTTTATATATATATAAAGTTTAGATGTAAAATTTTTCCCTTCCCTATGAAAACTTTTGATTCCATTTTTTGCTTCATGGACTTGATTGCTCTTTGCTCTGTATAATTTTTGAACCCATGAACTTCTACACTTCAAAAAGTACAGCCATTTATGGCTGTTAAAGAAATGCTTCAAATGGGAAATGGATGTCCATTGGATGAAGAACATAGCAAGCCGGAAGTTATTTTAGGTCATGGTGGGTGGATTTCTATAGTTGTTTTGAAGCAATCAGTAGCCACTTTGGAGGCCTAATTAAGGTATCTTCTAGAACCACTAATATCTTGAACTGCAGCTCGATTTTCTTTGAGGTAAAAAGAAATTCTTGTGGTTTCCTTCCTCATCAATCGAAATTAGAGGTAGAAAAGGAGGCAACCTTTTTCTCAGATCGGGGTGCCCACCATCTGTTTCTGCACTGTTCGAAAGGAGACTTGATTTAAGTGAGCTTTTCAAATACCTGGATTTATAACCCACCCTCATCATTCCTTCCAATCCTCAAGTTTAATACCTTGAATCCATATATTGTTCATGTAGATTTTATCGTGTAATTACTGAACCGAGGAAAGGTCAAGGTGCTTGCTTGGAAAAGTTTGGCTAGAGCACCTCATTTGTCACAGCCACCCACTGAACTCCTTTCAAGTTCCTTTACAGATGAGATCCTTTTCCTGTTTTCTGCATAGCTGATTCAACTGTAGTTTGAACAGTTTAGAGAAACGACTACTTGACAGATACACAATGCTTGATTTACATGGGGGACGCCTACTGTGCAGCACAGCAAAGGGATTTTTAGTTTGATAAGAGGAGAGAATATGTGTGCCTTGGATGTCTTTTTGAGAGTTTAGTCTGTCATAGTAGGAGGCGTGGGTTGTAACAGAGAAAGTGATAGCAATTGGTTAGATAAGATGGAAGGTCGAGTACTAATTGAAAAGCAGCTGTCACTTATCTTGACATTACTTTTCTTTATGTTTCAGCTAGATGAAATTTTTTTCCTAAGAATGTGCAAATCTCCTATTCACAACTAGTTCTACAAATGAATCTACAGAATTCTGAATGAAACTTCTGTGGTGTTGACTCATTTCTTCTGAGTAACGTTTCGGTTCAAATAATTTTTTCAATAATGGAAAAAAATATCGGTTTTGAATCTAGAAATATTTTAAACTTTTGGTTCGTGTACGTTGCATCCCTGCCACTGAGCATGTAGTTTTTGTAAGCATGACATGTTTATTATACAAACATAAATTTAATTTCATCTCTTTTTATAGGCTTTGGATCTTGGTAGGGGTGCAAATCCAAAGAGTTATATGGTTGAGGAAATATGGCAGGAGCTTGCAAAAGCAAAATACAGGCAGTGGGAAAAAGCTTCTACCAAACGTTCATGGGAATTACAGACCTTGAAGTTAGTTATTTTTCTGAGTTCAGCCTTTTGGTTTCCAGAGTTTGATGCATGTACACTTTTGTAATTGATAGTTAGGCACACGTTTTTTAGCTGAAAATATTAATGAACCATAACCGTTAAACAAATGGACTTAGGAAATGCGTTTCGAGTCATGGTGACCACTTAGAATTTAATATCTTACGAGTGTACCTAGCAACTAAATATTGTAGGGCTAGGCAGTCGTCACATGAGAATAGTCGAGGTAAGCACAAGTTGCATGAACACTCTTTGATACTAAAAATTTGAGACGGGGGGTTTCTCGATTCTGTTTCCTTTTTTTGATTTTGGTGAATGTATTGTTTTTCAGAGAAGCTTGTGAGGCAGCCCTTGAACAAAAGTATTTTCTTGACCATTCTGAACTAGAAGGGTTTGTAGATGAAGCTGAAATTGCTCATAGGAAACAATTAAAGTCTCTAAGAAGTGTGTTTGAAAAAGTTGGGGAGGCGGATGCGCCATCTGAGGTAATAAGCATGATGGTTGCTATCTTCAATTTTTCATTGTGACAAGCTTTTAGGCATAACATTTGCTGTTTAAATCCTGTGGAGGTACTAATTCAATATTCTCAGGTGCCTGATTATCTTTGTTGTAAAATTACACTTGATATTCTTCGTGATCCCGTTATTACTCCGAGTGGGGTTACGTATGAGAGAGCAGTGATACTCGACCATTTTCGAAAGGTGACAACATTACACCTTCCACTGCCATTTTCCCATGTCTTGTAGCTACAATTTTAACCATTTTCTTCCTTATCTAGGTGGGTAACTTCGATCCCTTAACGCGGGAACTGCTCGATGAGTCACAACTTGTACCGAATTTAGCCATAAAGGAAGCAGTAGAAGCCTTTCTAGATAAGCATGGATGGGCTTATAAGACAGATTAAGTTGAATTTGAAACGGAACTCAATCGAGTTGATGGTTAGGCCTGCACGGTCTCGTGTCTTTAATGGCGTGAGTTTGTCCTCGACTCTTCTGTATGCATTGTCAATTACGGTTTGTCATATGATATCATGCTTTCCATGACATTCTGAGGTGGTAGCGTCAATCATGTATATGATGTCCTGTCTTGATAATTTTATTGTACAGTTATTACTTAAACCTTCATTACGGTTTTAATTGGAAGGCTATGTTCAGCTTCGGTGCGCGTTTGTTCCTTTTTGGCTAAGCCTTGTCGTGTTCAAACCTTTGATCTACTAATCGAGAGTATGTATTAACTAGCTGAGTATTGTTTAAGTTGACATACCTTTTCATATTTAAATTGACGTTGTTCTTGATGGAACCTT TAGAGAGGGAGAGGAACTCGCCGGAGCAGGTTTTATGAGTGGTGAGTTTATAAGCGAGGATGAGAAGACCAGCCGCGTGAATGGTTTCACTCGCGATGAACAAGTAATTATGATTCGTAACCGTGTGCTTCAAAACAAACATCGCAGCCACCGCCGCCGCCACCGCAAGACCGATCTTCGACGCCGTGGATCTCCGCCTCAGCCAATCGCCCGCGGCCTGGAACGCTCTCCTCCTATTCGGACGCCTCTTCGACTCATCGCCGTCGCTCGTGGTCGGAACCCTACCGGAACCGAAACTGATCGGCTTGCTTCCTCCTCTCTCCTTCCCCGACAATGTCGCCGTCGCCGTCGCCGTTGCACCACCTTCTTCCACGGCCGCCGTCGATGACACCCTTACAGGAACTCCAGTGTCAGGTTGTTTGGAACTGTCCGAAACCATGGGCGGTTTTCCGTCAACCCAATACCACAATCCGTCCTCCTAAAACTGGCTGCTCTTCACTTTCTCTCTCCACTCGATCCCATAAACCCACTGTTCTCCTCTGTCTTTAGATTAGAATTCTTCAAATTTCTAGGCAATTCTGTTTCTGGGTTTGGTTCTGTTTCCGGAACTAGTAACAGCGAACAGAGAGATTTGGGGGTGGTTTTAATGGGAATTAGTAGTTTAGGCGGCGGCGGTGGGTGGAGTTATCGGTGGTGGAGGGAGGTTTTCCGGGATGAATTTGGCAATGTTGAGATTGGATTTACCGCTTCATTAAATCCCACGAATCCCCGAAATACTCACCAAATACACCACCCTTTTACGGTGTCTTATGTCCCACGCGATCCCCACCACCACAAACAACCGCTTCCGGCCGCCATGAAATACACTTATCCGGCGAAACCAAAGCTGAAGCAGTCGAATCTGAGCGACGACGAGAAGCAGGGGATCACGGCAGATAGCGACAACTGCGATGGAAAGAAGTAAATCTCGCCGTGAAAGAGGATGAAATGGATGGACATTATAGTCCGACTGCTAATCATGGCGGTTACATCGGTGACGAAGGTGGGTCGGAGCCAGCGGACCACACCGGCAAGCAGAAACCGGTGGGGCTTCTGCAGAAGAATGAAATCAGTTTCCAGAGCGACGATGGCAAAAAAATTTCTGTTTCGGCGGTTTCCAGTGGCATCACCGATGGTGACAGGGGAAGGAGGCGGCGCAACGGCGACAACGACGGCGAGATTGCTGTAGAAGGGGAAGTTAACTGCCACGTCATTTTTCGTCAATCAACGGTCAAAGGAGGTCCGGGCTATTTAGAACTAAAAATATTTTTTGTACTAATTTTTTGAGGGAAAGAAAAAAAGAAAAAAAAGAAAAAAAAGAAAAAAAAAAGAAAAAAAGGAATTTATAATTATCCGTACAAAATAATTAGAGGGAAATTTGTCAACTTTGGCGTCAACACATATTTTGCCGGCGAATCGCTTGAAATCACTATTCTTAAGGAAACGCCTCGATTTCTGTAATCCCATTTAACCAATTTTCTCTCTGTTCTTGATTGCCTGACCCTAAAAAAACCCCCCAAAGTTTCATTCATTATTGTCGCTTTGATTCCGTCGATCGGCGATGGGGCCGGGCTTCGTGGCCTTGTCTGGTGCTGCAAAACAGGCCGAGCTTCTCCGAAAAGATGGAAACCACTATTTTCAAAAAGGTAGAATCGGAGCCGCCATTGAAGCCTACACCGAGGCGATTACGCTATGCCCGAATGTTGCTGTGTATTTGACGAACCGCGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGATTGCCGGAGAGCCATTCAGATTGATAGCAATTCTGTGAAGGGACATTATATGTTAGGCCTAGCATTAATACAAAATAATGTATATCCAGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCAAAGAGTTATATGGTTGAGGAAATATGGCAGGAGCTTGCAAAAGCAAAATACAGGCAGTGGGAAAAAGCTTCTACCAAACGTTCATGGGAATTACAGACCTTGAAAGAAGCTTGTGAGGCAGCCCTTGAACAAAAGTATTTTCTTGACCATTCTGAACTAGAAGGGTTTGTAGATGAAGCTGAAATTGCTCATAGGAAACAATTAAAGTCTCTAAGAAGTGTGTTTGAAAAAGTTGGGGAGGCGGATGCGCCATCTGAGGTGCCTGATTATCTTTGTTGTAAAATTACACTTGATATTCTTCGTGATCCCGTTATTACTCCGAGTGGGGTTACGTATGAGAGAGCAGTGATACTCGACCATTTTCGAAAGGTGGGTAACTTCGATCCCTTAACGCGGGAACTGCTCGATGAGTCACAACTTGTACCGAATTTAGCCATAAAGGAAGCAGTAGAAGCCTTTCTAGATAAGCATGGATGGGCTTATAAGACAGATTAAGTTGAATTTGAAACGGAACTCAATCGAGTTGATGGTTAGGCCTGCACGGTCTCGTGTCTTTAATGGCGTGAGTTTGTCCTCGACTCTTCTGTATGCATTGTCAATTACGGTTTGTCATATGATATCATGCTTTCCATGACATTCTGAGGTGGTAGCGTCAATCATGTATATGATGTCCTGTCTTGATAATTTTATTGTACAGTTATTACTTAAACCTTCATTACGGTTTTAATTGGAAGGCTATGTTCAGCTTCGGTGCGCGTTTGTTCCTTTTTGGCTAAGCCTTGTCGTGTTCAAACCTTTGATCTACTAATCGAGAGTATGTATTAACTAGCTGAGTATTGTTTAAGTTGACATACCTTTTCATATTTAAATTGACGTTGTTCTTGATGGAACCTT ATGGGGCCGGGCTTCGTGGCCTTGTCTGGTGCTGCAAAACAGGCCGAGCTTCTCCGAAAAGATGGAAACCACTATTTTCAAAAAGGTAGAATCGGAGCCGCCATTGAAGCCTACACCGAGGCGATTACGCTATGCCCGAATGTTGCTGTGTATTTGACGAACCGCGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGATTGCCGGAGAGCCATTCAGATTGATAGCAATTCTGTGAAGGGACATTATATGTTAGGCCTAGCATTAATACAAAATAATGTATATCCAGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCAAAGAGTTATATGGTTGAGGAAATATGGCAGGAGCTTGCAAAAGCAAAATACAGGCAGTGGGAAAAAGCTTCTACCAAACGTTCATGGGAATTACAGACCTTGAAAGAAGCTTGTGAGGCAGCCCTTGAACAAAAGTATTTTCTTGACCATTCTGAACTAGAAGGGTTTGTAGATGAAGCTGAAATTGCTCATAGGAAACAATTAAAGTCTCTAAGAAGTGTGTTTGAAAAAGTTGGGGAGGCGGATGCGCCATCTGAGGTGCCTGATTATCTTTGTTGTAAAATTACACTTGATATTCTTCGTGATCCCGTTATTACTCCGAGTGGGGTTACGTATGAGAGAGCAGTGATACTCGACCATTTTCGAAAGGTGGGTAACTTCGATCCCTTAACGCGGGAACTGCTCGATGAGTCACAACTTGTACCGAATTTAGCCATAAAGGAAGCAGTAGAAGCCTTTCTAGATAAGCATGGATGGGCTTATAAGACAGATTAA MGPGFVALSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVAVYLTNRALCHRKRNDWKKVEEDCRRAIQIDSNSVKGHYMLGLALIQNNVYPEGIKHLEKALDLGRGANPKSYMVEEIWQELAKAKYRQWEKASTKRSWELQTLKEACEAALEQKYFLDHSELEGFVDEAEIAHRKQLKSLRSVFEKVGEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPLTRELLDESQLVPNLAIKEAVEAFLDKHGWAYKTD Homology
BLAST of Cp4.1LG05g00660.1 vs. ExPASy Swiss-Prot
Match: Q9SRS9 (E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana OX=3702 GN=CHIP PE=1 SV=1) HSP 1 Score: 366.7 bits (940), Expect = 2.4e-100 Identity = 176/270 (65.19%), Postives = 209/270 (77.41%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. ExPASy Swiss-Prot
Match: Q9UNE7 (E3 ubiquitin-protein ligase CHIP OS=Homo sapiens OX=9606 GN=STUB1 PE=1 SV=2) HSP 1 Score: 176.4 bits (446), Expect = 4.5e-43 Identity = 98/276 (35.51%), Postives = 154/276 (55.80%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. ExPASy Swiss-Prot
Match: Q9WUD1 (E3 ubiquitin-protein ligase CHIP OS=Mus musculus OX=10090 GN=Stub1 PE=1 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 4.5e-43 Identity = 100/290 (34.48%), Postives = 157/290 (54.14%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. ExPASy Swiss-Prot
Match: Q5ZHY5 (E3 ubiquitin-protein ligase CHIP OS=Gallus gallus OX=9031 GN=STUB1 PE=2 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 2.9e-42 Identity = 98/273 (35.90%), Postives = 152/273 (55.68%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. ExPASy Swiss-Prot
Match: Q8VD33 (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus OX=10090 GN=Sgtb PE=1 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.3e-13 Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. NCBI nr
Match: XP_023533768.1 (E3 ubiquitin-protein ligase CHIP-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 569 bits (1467), Expect = 8.40e-205 Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. NCBI nr
Match: XP_022931210.1 (E3 ubiquitin-protein ligase CHIP-like [Cucurbita moschata] >XP_022995799.1 E3 ubiquitin-protein ligase CHIP-like [Cucurbita maxima]) HSP 1 Score: 566 bits (1459), Expect = 1.39e-203 Identity = 280/282 (99.29%), Postives = 281/282 (99.65%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. NCBI nr
Match: KAG6606301.1 (E3 ubiquitin-protein ligase CHIP, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 565 bits (1455), Expect = 5.68e-203 Identity = 279/282 (98.94%), Postives = 281/282 (99.65%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. NCBI nr
Match: KAG7036240.1 (E3 ubiquitin-protein ligase CHIP [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 555 bits (1431), Expect = 3.48e-199 Identity = 278/290 (95.86%), Postives = 281/290 (96.90%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. NCBI nr
Match: XP_038886937.1 (E3 ubiquitin-protein ligase CHIP isoform X1 [Benincasa hispida]) HSP 1 Score: 528 bits (1361), Expect = 1.17e-188 Identity = 262/281 (93.24%), Postives = 271/281 (96.44%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. ExPASy TrEMBL
Match: A0A6J1K6X7 (E3 ubiquitin-protein ligase CHIP-like OS=Cucurbita maxima OX=3661 GN=LOC111491225 PE=4 SV=1) HSP 1 Score: 566 bits (1459), Expect = 6.75e-204 Identity = 280/282 (99.29%), Postives = 281/282 (99.65%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. ExPASy TrEMBL
Match: A0A6J1EYU4 (E3 ubiquitin-protein ligase CHIP-like OS=Cucurbita moschata OX=3662 GN=LOC111437457 PE=4 SV=1) HSP 1 Score: 566 bits (1459), Expect = 6.75e-204 Identity = 280/282 (99.29%), Postives = 281/282 (99.65%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. ExPASy TrEMBL
Match: A0A6J1DYV8 (E3 ubiquitin-protein ligase CHIP OS=Momordica charantia OX=3673 GN=LOC111025874 PE=4 SV=1) HSP 1 Score: 526 bits (1354), Expect = 6.60e-188 Identity = 257/282 (91.13%), Postives = 271/282 (96.10%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. ExPASy TrEMBL
Match: A0A0A0LBQ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G634310 PE=4 SV=1) HSP 1 Score: 516 bits (1328), Expect = 6.06e-184 Identity = 253/282 (89.72%), Postives = 268/282 (95.04%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. ExPASy TrEMBL
Match: A0A6J1HID6 (E3 ubiquitin-protein ligase CHIP-like OS=Cucurbita moschata OX=3662 GN=LOC111463871 PE=4 SV=1) HSP 1 Score: 509 bits (1310), Expect = 3.35e-181 Identity = 252/282 (89.36%), Postives = 265/282 (93.97%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. TAIR 10
Match: AT3G07370.1 (carboxyl terminus of HSC70-interacting protein ) HSP 1 Score: 366.7 bits (940), Expect = 1.7e-101 Identity = 176/270 (65.19%), Postives = 209/270 (77.41%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. TAIR 10
Match: AT2G42810.1 (protein phosphatase 5.2 ) HSP 1 Score: 66.2 bits (160), Expect = 4.7e-11 Identity = 35/124 (28.23%), Postives = 62/124 (50.00%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. TAIR 10
Match: AT2G42810.2 (protein phosphatase 5.2 ) HSP 1 Score: 66.2 bits (160), Expect = 4.7e-11 Identity = 35/124 (28.23%), Postives = 62/124 (50.00%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. TAIR 10
Match: AT3G61390.2 (RING/U-box superfamily protein ) HSP 1 Score: 64.3 bits (155), Expect = 1.8e-10 Identity = 49/179 (27.37%), Postives = 86/179 (48.04%), Query Frame = 0
BLAST of Cp4.1LG05g00660.1 vs. TAIR 10
Match: AT2G45920.1 (U-box domain-containing protein ) HSP 1 Score: 60.1 bits (144), Expect = 3.4e-09 Identity = 51/187 (27.27%), Postives = 84/187 (44.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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