Cp4.1LG04g03890.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g03890.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Eukaryotic translation initiation factor 4C
Location	Cp4.1LG04: 6933419 .. 6933856 (-)
Sequence length	438
RNA-Seq Expression	Cp4.1LG04g03890.1
Synteny	Cp4.1LG04g03890.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAGAACAAGGGAAAGGGAGGTAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGATGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAAGAATATGCTCAAGTGCTCCGAATGCTAGGTAATGGTCGGTGTGAAGCGATGTGTATCGATGGGACTAAACGTCTTTGTCATATTCGGGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATCATACTCGTTGGTCTTCGTGACTATCAAGACGACAAAGCTGACGTGATTCTCAAATACATGCCTGATGAAGCTAGGCTTTTGAAAGCTTATGGTGAACTACCTGAGAATACACGTCTTAACGAGGGTATTGTTGGGGGTATGGATGATGACGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGACGAAGATATTGATAGGATCTAG

mRNA sequence

ATGCCAAAGAACAAGGGAAAGGGAGGTAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGATGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAAGAATATGCTCAAGTGCTCCGAATGCTAGGTAATGGTCGGTGTGAAGCGATGTGTATCGATGGGACTAAACGTCTTTGTCATATTCGGGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATCATACTCGTTGGTCTTCGTGACTATCAAGACGACAAAGCTGACGTGATTCTCAAATACATGCCTGATGAAGCTAGGCTTTTGAAAGCTTATGGTGAACTACCTGAGAATACACGTCTTAACGAGGGTATTGTTGGGGGTATGGATGATGACGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGACGAAGATATTGATAGGATCTAG

Coding sequence (CDS)

ATGCCAAAGAACAAGGGAAAGGGAGGTAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGATGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAAGAATATGCTCAAGTGCTCCGAATGCTAGGTAATGGTCGGTGTGAAGCGATGTGTATCGATGGGACTAAACGTCTTTGTCATATTCGGGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATCATACTCGTTGGTCTTCGTGACTATCAAGACGACAAAGCTGACGTGATTCTCAAATACATGCCTGATGAAGCTAGGCTTTTGAAAGCTTATGGTGAACTACCTGAGAATACACGTCTTAACGAGGGTATTGTTGGGGGTATGGATGATGACGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGACGAAGATATTGATAGGATCTAG

Protein sequence

MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

Homology

[Close]

BLAST of Cp4.1LG04g03890.1 vs. ExPASy Swiss-Prot
Match: P56331 (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 257.7 bits (657), Expect = 7.9e-68
Identity = 131/146 (89.73%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI- 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP+NTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIG 120

Query: 121 VGGMDDDDEGGGDAYIEFEDEDIDRI 146
            GG+D++ +   D YIEFEDEDID+I
Sbjct: 121 AGGLDEEMDTAND-YIEFEDEDIDKI 145

[Close]

BLAST of Cp4.1LG04g03890.1 vs. ExPASy Swiss-Prot
Match: P47815 (Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 8.2e-65
Identity = 124/146 (84.93%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP+  RLNEG+ 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV- 120

Query: 121 GGMDDDDEGGGDA-YIEFEDEDIDRI 146
             +D  +EG GD+ YI+FEDEDID+I
Sbjct: 121 -DVDGPEEGEGDSDYIQFEDEDIDKI 144

[Close]

BLAST of Cp4.1LG04g03890.1 vs. ExPASy Swiss-Prot
Match: P47813 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=9606 GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 204.1 bits (518), Expect = 1.0e-51
Identity = 108/145 (74.48%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
            G  DDDE   D  I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of Cp4.1LG04g03890.1 vs. ExPASy Swiss-Prot
Match: Q8BMJ3 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10090 GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 204.1 bits (518), Expect = 1.0e-51
Identity = 108/145 (74.48%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
            G  DDDE   D  I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of Cp4.1LG04g03890.1 vs. ExPASy Swiss-Prot
Match: Q5RA42 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=9601 GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 204.1 bits (518), Expect = 1.0e-51
Identity = 108/145 (74.48%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
            G  DDDE   D  I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of Cp4.1LG04g03890.1 vs. NCBI nr
Match: XP_022930658.1 (eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022988995.1 eukaryotic translation initiation factor 1A-like [Cucurbita maxima] >XP_023529812.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo] >KAG6589133.1 hypothetical protein SDJN03_17698, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 290 bits (743), Expect = 5.76e-99
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145
           GGMDDDDEGGGDAYIEFEDEDIDRI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145

[Close]

BLAST of Cp4.1LG04g03890.1 vs. NCBI nr
Match: XP_004144524.1 (eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_008455498.1 PREDICTED: eukaryotic translation initiation factor 1A-like [Cucumis melo] >XP_038888593.1 eukaryotic translation initiation factor 1A-like [Benincasa hispida] >KAA0059115.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa] >KGN43463.1 hypothetical protein Csa_020194 [Cucumis sativus] >TYK21620.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa])

HSP 1 Score: 289 bits (740), Expect = 1.65e-98
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145
           GGMDDDDEGGGDAYIEFEDEDID+I
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of Cp4.1LG04g03890.1 vs. NCBI nr
Match: XP_022135622.1 (eukaryotic translation initiation factor 1A-like [Momordica charantia])

HSP 1 Score: 285 bits (730), Expect = 5.54e-97
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYMPDEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145
           GGMDDDDEGGGDAYIEFEDEDID+I
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of Cp4.1LG04g03890.1 vs. NCBI nr
Match: XP_031490608.1 (eukaryotic translation initiation factor 1A [Nymphaea colorata])

HSP 1 Score: 280 bits (717), Expect = 5.32e-95
Identity = 139/145 (95.86%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIT 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145
           GG+DD+DEGG D YIEFEDEDID+I
Sbjct: 121 GGLDDEDEGGADDYIEFEDEDIDKI 145

[Close]

BLAST of Cp4.1LG04g03890.1 vs. NCBI nr
Match: XP_004304062.1 (PREDICTED: eukaryotic translation initiation factor 1A [Fragaria vesca subsp. vesca])

HSP 1 Score: 279 bits (714), Expect = 1.53e-94
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIT 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145
           GG+D++DE GGD YIEFEDEDID+I
Sbjct: 121 GGLDEEDEAGGDEYIEFEDEDIDKI 145

[Close]

BLAST of Cp4.1LG04g03890.1 vs. ExPASy TrEMBL
Match: A0A6J1JL52 (Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC111486190 PE=3 SV=1)

HSP 1 Score: 290 bits (743), Expect = 2.79e-99
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145
           GGMDDDDEGGGDAYIEFEDEDIDRI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145

[Close]

BLAST of Cp4.1LG04g03890.1 vs. ExPASy TrEMBL
Match: A0A6J1EVW9 (Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC111437059 PE=3 SV=1)

HSP 1 Score: 290 bits (743), Expect = 2.79e-99
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145
           GGMDDDDEGGGDAYIEFEDEDIDRI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145

[Close]

BLAST of Cp4.1LG04g03890.1 vs. ExPASy TrEMBL
Match: A0A5A7UZV0 (Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00180 PE=3 SV=1)

HSP 1 Score: 289 bits (740), Expect = 8.00e-99
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145
           GGMDDDDEGGGDAYIEFEDEDID+I
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of Cp4.1LG04g03890.1 vs. ExPASy TrEMBL
Match: A0A0A0K1Y5 (Eukaryotic translation initiation factor 4C OS=Cucumis sativus OX=3659 GN=Csa_7G037660 PE=3 SV=1)

HSP 1 Score: 289 bits (740), Expect = 8.00e-99
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145
           GGMDDDDEGGGDAYIEFEDEDID+I
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of Cp4.1LG04g03890.1 vs. ExPASy TrEMBL
Match: A0A1S3C1S5 (Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103495650 PE=3 SV=1)

HSP 1 Score: 289 bits (740), Expect = 8.00e-99
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145
           GGMDDDDEGGGDAYIEFEDEDID+I
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of Cp4.1LG04g03890.1 vs. TAIR 10
Match: AT2G04520.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 273.1 bits (697), Expect = 1.3e-73
Identity = 133/145 (91.72%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
           G ++DDD+   D Y+EFEDEDIDRI
Sbjct: 121 GDLEDDDDNNDDDYVEFEDEDIDRI 145

[Close]

BLAST of Cp4.1LG04g03890.1 vs. TAIR 10
Match: AT5G35680.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 269.6 bits (688), Expect = 1.4e-72
Identity = 133/145 (91.72%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
           G +DDDD+  G+ YIEFEDEDIDRI
Sbjct: 121 GDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]

BLAST of Cp4.1LG04g03890.1 vs. TAIR 10
Match: AT5G35680.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 269.6 bits (688), Expect = 1.4e-72
Identity = 133/145 (91.72%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
           G +DDDD+  G+ YIEFEDEDIDRI
Sbjct: 121 GDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]

BLAST of Cp4.1LG04g03890.1 vs. TAIR 10
Match: AT5G35680.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 247.7 bits (631), Expect = 5.8e-66
Identity = 120/128 (93.75%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDE 129
           G +DDDD+
Sbjct: 121 GDLDDDDD 128

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g03890.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56331	7.9e-68	89.73	Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=...	[more]
P47815	8.2e-65	84.93	Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV...	[more]
P47813	1.0e-51	74.48	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=96...	[more]
Q8BMJ3	1.0e-51	74.48	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10...	[more]
Q5RA42	1.0e-51	74.48	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=96...	[more]

BLAST of Cp4.1LG04g03890.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930658.1	5.76e-99	100.00	eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022988...	[more]
XP_004144524.1	1.65e-98	99.31	eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_008455498.1 PR...	[more]
XP_022135622.1	5.54e-97	97.93	eukaryotic translation initiation factor 1A-like [Momordica charantia]	[more]
XP_031490608.1	5.32e-95	95.86	eukaryotic translation initiation factor 1A [Nymphaea colorata]	[more]
XP_004304062.1	1.53e-94	95.17	PREDICTED: eukaryotic translation initiation factor 1A [Fragaria vesca subsp. ve...	[more]

BLAST of Cp4.1LG04g03890.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JL52	2.79e-99	100.00	Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1EVW9	2.79e-99	100.00	Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A5A7UZV0	8.00e-99	99.31	Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0K1Y5	8.00e-99	99.31	Eukaryotic translation initiation factor 4C OS=Cucumis sativus OX=3659 GN=Csa_7G...	[more]
A0A1S3C1S5	8.00e-99	99.31	Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103495...	[more]

BLAST of Cp4.1LG04g03890.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04520.1	1.3e-73	91.72	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.1	1.4e-72	91.72	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.2	1.4e-72	91.72	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.3	5.8e-66	93.75	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 28..110 e-value: 7.0E-49 score: 178.4
IPR001253	Translation initiation factor 1A (eIF-1A)	TIGRFAM	TIGR00523	TIGR00523	coord: 14..110 e-value: 8.1E-35 score: 116.8
IPR001253	Translation initiation factor 1A (eIF-1A)	PANTHER	PTHR21668	EIF-1A	coord: 1..145
IPR001253	Translation initiation factor 1A (eIF-1A)	HAMAP	MF_00216	aIF_1A	coord: 16..110 score: 18.345238
IPR001253	Translation initiation factor 1A (eIF-1A)	CDD	cd05793	S1_IF1A	coord: 33..109 e-value: 1.6918E-41 score: 131.107
None	No IPR available	GENE3D	2.40.50.140		coord: 2..145 e-value: 1.3E-57 score: 195.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR21668:SF18	EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE	coord: 1..145
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 32..93 e-value: 4.8E-22 score: 77.6
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 22..96 score: 31.623802
IPR018104	Translation initiation factor 1A (eIF-1A), conserved site	PROSITE	PS01262	IF1A	coord: 41..63
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..143

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG04g03890	Cp4.1LG04g03890	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g03890.1:exon:001	Cp4.1LG04g03890.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g03890.1:cds:001	Cp4.1LG04g03890.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g03890.1	Cp4.1LG04g03890.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003743	translation initiation factor activity