Cp4.1LG03g03010.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g03010.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG03: 366415 .. 367295 (+)
Sequence length717
RNA-Seq ExpressionCp4.1LG03g03010.1
SyntenyCp4.1LG03g03010.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGACCAACCATGCTTGCTAATTGAGAATCTTTCATCTCCTCAAAGGCGTGGCCCTCCAAATTCACAGGTCTAACTCATCCCTGTCTAACTGTTGGCTTCTAAAAATTTATGGCCCAAACATATCACGCAGAGAGATTCGTGCTGTCTAGGCCATTCACTCCTTGAGGAGATGCCATTATTTAGGCCGTCAACGGTGGTTGTTCCATCCAGTTCCTTCCTTTATGGACAATACTGAACAAGAACAACTCAGCCAAGTAAAACTTTTATGCATATTAATTTACCTGATCAAGTGATATTTTGTTGATATCCTATTTATGTAATTTTTTAATGAACAGATCTCTGGTGTTCACGCATTTAGACAAGAAAATTTCAGAGATTCGAAGGCAGAAACTCTATTATCATCTGCTAAAGCATCATCTTACAGAGACGGGCACGCAAAAGAATGTCTAAAATATCGACTAAATTTTACATGCACATTCCATTCCCATGAGTACAGAACTTTTAGTACGTACTTCCAGAGACTGAATTTGATCTGGACAAAGACGAAGAGTGGTTTAAGAACTCGATGCAATCTTCAATGGCTTCAGCTCGATGCGAGTCCATGGAGTCCGAGACCGATCTTGACCTTGTAAAGGTGGAGGTGGAGGCTGAAGAAACCTTTCGAGAAGATTTTCTTGTTGATACAAAGCGAATGGCTTCACTTACTTTGGCCTTGAGGCTCTGTAGAAACCTAACCGGCAAGTACCTTGTGTCTCTGCTCAGGCCGAAGCTCCATATTCCGGCTCCGCCGTCACGGCCGCCGTGTTTGAGCAGGACTGTTGGCTTATCATTCACATCGGGACTGAAGCTGACCCGTTTGCTCGCTTTCCTTGACATCTGA

mRNA sequence

TTGACCAACCATGCTTGCTAATTGAGAATCTTTCATCTCCTCAAAGGCGTGGCCCTCCAAATTCACAGGTCTAACTCATCCCTGTCTAACTGTTGGCTTCTAAAAATTTATGGCCCAAACATATCACGCAGAGAGATTCGTGCTGTCTAGGCCATTCACTCCTTGAGGAGATGCCATTATTTAGGCCGTCAACGGTGGTTGTTCCATCCAGTTCCTTCCTTTATGGACAATACTGAACAAGAACAACTCAGCCAAATCTCTGGTGTTCACGCATTTAGACAAGAAAATTTCAGAGATTCGAAGGCAGAAACTCTATTATCATCTGCTAAAGCATCATCTTACAGAGACGGGCACGCAAAAGAATGTCTAAAATATCGACTAAATTTTACATGCACATTCCATTCCCATGAGTACAGAACTTTTACTCGATGCGAGTCCATGGAGTCCGAGACCGATCTTGACCTTGTAAAGGTGGAGGTGGAGGCTGAAGAAACCTTTCGAGAAGATTTTCTTGTTGATACAAAGCGAATGGCTTCACTTACTTTGGCCTTGAGGCTCTGTAGAAACCTAACCGGCAAGTACCTTGTGTCTCTGCTCAGGCCGAAGCTCCATATTCCGGCTCCGCCGTCACGGCCGCCGTGTTTGAGCAGGACTGTTGGCTTATCATTCACATCGGGACTGAAGCTGACCCGTTTGCTCGCTTTCCTTGACATCTGA

Coding sequence (CDS)

ATGGACAATACTGAACAAGAACAACTCAGCCAAATCTCTGGTGTTCACGCATTTAGACAAGAAAATTTCAGAGATTCGAAGGCAGAAACTCTATTATCATCTGCTAAAGCATCATCTTACAGAGACGGGCACGCAAAAGAATGTCTAAAATATCGACTAAATTTTACATGCACATTCCATTCCCATGAGTACAGAACTTTTACTCGATGCGAGTCCATGGAGTCCGAGACCGATCTTGACCTTGTAAAGGTGGAGGTGGAGGCTGAAGAAACCTTTCGAGAAGATTTTCTTGTTGATACAAAGCGAATGGCTTCACTTACTTTGGCCTTGAGGCTCTGTAGAAACCTAACCGGCAAGTACCTTGTGTCTCTGCTCAGGCCGAAGCTCCATATTCCGGCTCCGCCGTCACGGCCGCCGTGTTTGAGCAGGACTGTTGGCTTATCATTCACATCGGGACTGAAGCTGACCCGTTTGCTCGCTTTCCTTGACATCTGA

Protein sequence

MDNTEQEQLSQISGVHAFRQENFRDSKAETLLSSAKASSYRDGHAKECLKYRLNFTCTFHSHEYRTFTRCESMESETDLDLVKVEVEAEETFREDFLVDTKRMASLTLALRLCRNLTGKYLVSLLRPKLHIPAPPSRPPCLSRTVGLSFTSGLKLTRLLAFLDI
Homology
BLAST of Cp4.1LG03g03010.1 vs. NCBI nr
Match: KAG7017238.1 (hypothetical protein SDJN02_19101, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283 bits (725), Expect = 3.14e-95
Identity = 152/176 (86.36%), Postives = 152/176 (86.36%), Query Frame = 0

Query: 12  ISGVHAFRQENFRDSKAETLLSSAKASSYRDGHAKECLKYRLNFTCTFHSHEYRTF---- 71
           ISGVHAFRQENFRDSKAETLLSSAKASSYRDGHAKECLKYRLNFTCTFHSHEYRTF    
Sbjct: 14  ISGVHAFRQENFRDSKAETLLSSAKASSYRDGHAKECLKYRLNFTCTFHSHEYRTFKTEF 73

Query: 72  -------------------TRCESMESETDLDLVKVEVEAEETFREDFLVDTKRMASLTL 131
                               RCESMESETDLDLVKVEVEAEETFREDFLVDTKRMASLTL
Sbjct: 74  DLDKDEEWFKNSMQSSMASARCESMESETDLDLVKVEVEAEETFREDFLVDTKRMASLTL 133

Query: 132 ALRLCRNLTGKYLVSLLRPKLHIPAPPSRPPCLSRTVGLSFTSGLKLTRLLAFLDI 164
           ALRLCRNLTGKYLVSLLRPKLHIPAPPSRPPCLSRTVGLSFTSGLKLTRLLAFLDI
Sbjct: 134 ALRLCRNLTGKYLVSLLRPKLHIPAPPSRPPCLSRTVGLSFTSGLKLTRLLAFLDI 189

BLAST of Cp4.1LG03g03010.1 vs. NCBI nr
Match: KAG6596356.1 (hypothetical protein SDJN03_09536, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145 bits (365), Expect = 3.15e-41
Identity = 82/96 (85.42%), Postives = 84/96 (87.50%), Query Frame = 0

Query: 69  RCESMESETDLDLVKVEVEAEETFREDFLVDTKRMASLTLALRLCRNLTGKYLVSLLRPK 128
           RC+SMESETDLDLVKV   AEETFREDFLVDTKRMASLTLAL+LCRN TGK LVSL RPK
Sbjct: 9   RCDSMESETDLDLVKVA--AEETFREDFLVDTKRMASLTLALKLCRNPTGKCLVSLFRPK 68

Query: 129 LHIPAPPSRPPCLSRTVGLSFTSGLKLTRLLAFLDI 164
           L IPAP S PPCLS TVGLSFTSGLKLTRLL FL I
Sbjct: 69  LKIPAPSSPPPCLSMTVGLSFTSGLKLTRLLDFLVI 102

BLAST of Cp4.1LG03g03010.1 vs. NCBI nr
Match: KAG7027905.1 (Sulfoquinovosyl transferase SQD2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145 bits (365), Expect = 5.84e-37
Identity = 82/96 (85.42%), Postives = 84/96 (87.50%), Query Frame = 0

Query: 69  RCESMESETDLDLVKVEVEAEETFREDFLVDTKRMASLTLALRLCRNLTGKYLVSLLRPK 128
           RC+SMESETDLDLVKV   AEETFREDFLVDTKRMASLTLAL+LCRN TGK LVSL RPK
Sbjct: 98  RCDSMESETDLDLVKVA--AEETFREDFLVDTKRMASLTLALKLCRNPTGKCLVSLFRPK 157

Query: 129 LHIPAPPSRPPCLSRTVGLSFTSGLKLTRLLAFLDI 164
           L IPAP S PPCLS TVGLSFTSGLKLTRLL FL I
Sbjct: 158 LKIPAPSSPPPCLSMTVGLSFTSGLKLTRLLDFLVI 191

BLAST of Cp4.1LG03g03010.1 vs. NCBI nr
Match: TKY65880.1 (hypothetical protein E2542_SST08742 [Spatholobus suberectus])

HSP 1 Score: 57.8 bits (138), Expect = 2.25e-07
Identity = 49/110 (44.55%), Postives = 59/110 (53.64%), Query Frame = 0

Query: 69  RCESMESETDLDLVKVEVEAEETFREDFL-VDTKRMASLTLALRLCRNLTGKYLVSLLRP 128
           RCES+  + D DL KV+   EETF ED L  +T  +   T +     NLTG  LVS+   
Sbjct: 9   RCESVRPDNDRDLTKVD---EETFLEDLLPTETFLIVLATFSPSRRSNLTGDKLVSIGNL 68

Query: 129 KLHI---------PAPPSR----PPCLSRTVGLSFTSGLKLTRLLAFLDI 164
           K+H+           PP      PPCL + VGLS TSGLK T LL FLDI
Sbjct: 69  KVHVLVILFLFLETLPPLSSLPPPPCLRKMVGLSLTSGLKHT-LLLFLDI 114

BLAST of Cp4.1LG03g03010.1 vs. NCBI nr
Match: KAF9680019.1 (hypothetical protein SADUNF_Sadunf06G0076600 [Salix dunnii])

HSP 1 Score: 57.4 bits (137), Expect = 1.04e-06
Identity = 50/102 (49.02%), Postives = 57/102 (55.88%), Query Frame = 0

Query: 71  ESMESETDLDLVKVEVEAEETFRED-FLVDTKRMASLTLALRLCRNLTGKYLVSLLRPKL 130
           ES  S +DLDL K++     T RED  L+DTKR A  T ALR   NL G+    L     
Sbjct: 8   ESTASASDLDLGKLDGV---TAREDSLLMDTKRRALATFALRPLSNLAGENFEVLGSLNA 67

Query: 131 HIPA------PPSRP-PCLSRTVGLSFTSGLKLTRLLAFLDI 164
            +PA      PP  P P L + VGLS TSGLKLTRLLA  DI
Sbjct: 68  SVPAIFFLFPPPLVPLPFLRKIVGLSLTSGLKLTRLLALRDI 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7017238.13.14e-9586.36hypothetical protein SDJN02_19101, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6596356.13.15e-4185.42hypothetical protein SDJN03_09536, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7027905.15.84e-3785.42Sulfoquinovosyl transferase SQD2 [Cucurbita argyrosperma subsp. argyrosperma][more]
TKY65880.12.25e-0744.55hypothetical protein E2542_SST08742 [Spatholobus suberectus][more]
KAF9680019.11.04e-0649.02hypothetical protein SADUNF_Sadunf06G0076600 [Salix dunnii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG03g03010Cp4.1LG03g03010gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG03g03010.1:five_prime_utr:001Cp4.1LG03g03010.1:five_prime_utr:001five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG03g03010.1:exon:001Cp4.1LG03g03010.1:exon:001exon
Cp4.1LG03g03010.1:exon:002Cp4.1LG03g03010.1:exon:002exon
Cp4.1LG03g03010.1:exon:003Cp4.1LG03g03010.1:exon:003exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG03g03010.1:cds:003Cp4.1LG03g03010.1:cds:003CDS
Cp4.1LG03g03010.1:cds:002Cp4.1LG03g03010.1:cds:002CDS
Cp4.1LG03g03010.1:cds:001Cp4.1LG03g03010.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG03g03010.1Cp4.1LG03g03010.1-proteinpolypeptide