Cp4.1LG02g01750.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g01750.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	pre-mRNA-splicing factor CWC22 homolog
Location	Cp4.1LG02: 4398576 .. 4399310 (-)
Sequence length	513
RNA-Seq Expression	Cp4.1LG02g01750.1
Synteny	Cp4.1LG02g01750.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTCGCAGGGAACAGAGCTCCTCCGGCGAGATCTTCTCGTTCCCGAGCACTCCGGTTCAGGATCAGGATCAGGATTCCGATTTCGAATTCGGATCCATTACTCCAGATTCTCCTTCCACTTTCAACAACTCGCCGGCGGATCATCTGTTCGTGAACGGTCGTCTTTTGCCTCACTCTTTTCCGCCGCAACCGATTGGTGTTTACGCTGTCGATCGGACGAGTAGCGTCGGGAGTAAGGACTCGATCATGTCGTCGCGGAGTAATAGCACTAATAGTAGGAGCAGTAGCAGTTGCGGTAGCAGTACTAGCGCGAGGACGAGTTCGAGCGAAAGTAATAATGTCGACAGATCCTCCAGATTCTCTTCGCATCAGAAGAAATCTCCGAAATCTTCTGTTTCCGCTCAAGTGTACGGATCGTCTCAGAGATGGCAGTTCATCGCGTCGGTTCCGGTTCCGACGACGCTGAGCCGGGAGAATTCGAGGAGGAAGAAGGCCGTGGAGAAAATTGGGGGAAAATCGGATTTGAGGCGGAACAAAAAGCGAACAGAGAAGACGACGGCGAGGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAATATGTGGTTCGGAAGGAAGGTTTTCCGGTGGATTATTCTGGTTTGTAAAGAATGCCATGCGATCGAACCATCGAGAAAGGATGAGATTGTGATGAGGAAGACGAAATTGACGAAACCGAAGAGTTATTGA

mRNA sequence

ATGGAGTCTCGCAGGGAACAGAGCTCCTCCGGCGAGATCTTCTCGTTCCCGAGCACTCCGGTTCAGGATCAGGATCAGGATTCCGATTTCGAATTCGGATCCATTACTCCAGATTCTCCTTCCACTTTCAACAACTCGCCGGCGGATCATCTGTTCAAGAAATCTCCGAAATCTTCTGTTTCCGCTCAAGTGTACGGATCGTCTCAGAGATGGCAGTTCATCGCGTCGGTTCCGGTTCCGACGACGCTGAGCCGGGAGAATTCGAGGAGGAAGAAGGCCGTGGAGAAAATTGGGGGAAAATCGGATTTGAGGCGGAACAAAAAGCGAACAGAGAAGACGACGGCGAGGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAATATGTGGTTCGGAAGGAAGGTTTTCCGGTGGATTATTCTGGTTTGTAAAGAATGCCATGCGATCGAACCATCGAGAAAGGATGAGATTGTGATGAGGAAGACGAAATTGACGAAACCGAAGAGTTATTGA

Coding sequence (CDS)

ATGGAGTCTCGCAGGGAACAGAGCTCCTCCGGCGAGATCTTCTCGTTCCCGAGCACTCCGGTTCAGGATCAGGATCAGGATTCCGATTTCGAATTCGGATCCATTACTCCAGATTCTCCTTCCACTTTCAACAACTCGCCGGCGGATCATCTGTTCAAGAAATCTCCGAAATCTTCTGTTTCCGCTCAAGTGTACGGATCGTCTCAGAGATGGCAGTTCATCGCGTCGGTTCCGGTTCCGACGACGCTGAGCCGGGAGAATTCGAGGAGGAAGAAGGCCGTGGAGAAAATTGGGGGAAAATCGGATTTGAGGCGGAACAAAAAGCGAACAGAGAAGACGACGGCGAGGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAATATGTGGTTCGGAAGGAAGGTTTTCCGGTGGATTATTCTGGTTTGTAAAGAATGCCATGCGATCGAACCATCGAGAAAGGATGAGATTGTGATGAGGAAGACGAAATTGACGAAACCGAAGAGTTATTGA

Protein sequence

MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRNKKRTEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLTKPKSY

Homology

[Close]

BLAST of Cp4.1LG02g01750.1 vs. NCBI nr
Match: XP_023525336.1 (pre-mRNA-splicing factor CWC22 homolog [Cucurbita pepo subsp. pepo] >KAG6607885.1 hypothetical protein SDJN03_01227, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037411.1 hypothetical protein SDJN02_01037, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284 bits (726), Expect = 1.83e-94
Identity = 170/244 (69.67%), Postives = 170/244 (69.67%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLF-------- 60
           MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLF        
Sbjct: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS 120

Query: 121 ------KKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 170
                 KKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN
Sbjct: 121 RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 180

[Close]

BLAST of Cp4.1LG02g01750.1 vs. NCBI nr
Match: XP_022941070.1 (pre-mRNA-splicing factor CWC22 homolog [Cucurbita moschata])

HSP 1 Score: 281 bits (720), Expect = 1.50e-93
Identity = 169/244 (69.26%), Postives = 169/244 (69.26%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLF-------- 60
           MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLF        
Sbjct: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS 120

Query: 121 ------KKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 170
                 KKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN
Sbjct: 121 RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 180

[Close]

BLAST of Cp4.1LG02g01750.1 vs. NCBI nr
Match: XP_022981938.1 (pre-mRNA-splicing factor CWC22 homolog [Cucurbita maxima])

HSP 1 Score: 268 bits (685), Expect = 3.06e-88
Identity = 167/245 (68.16%), Postives = 167/245 (68.16%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLF-------- 60
           MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLF        
Sbjct: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS 120

Query: 121 ------KKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 170
                 KKSPKSSVSAQVYGSSQRWQFIASVP   TLSRENSRRKKAVEKIGGKSDLRRN
Sbjct: 121 RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPA--TLSRENSRRKKAVEKIGGKSDLRRN 180

[Close]

BLAST of Cp4.1LG02g01750.1 vs. NCBI nr
Match: XP_038899281.1 (probable membrane-associated kinase regulator 1 [Benincasa hispida])

HSP 1 Score: 227 bits (579), Expect = 5.93e-72
Identity = 155/260 (59.62%), Postives = 160/260 (61.54%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLF-------- 60
           MESRRE+SSSGEIFSFPSTPVQDQD  SDFEFGSITPDSPSTFNNSPADHLF        
Sbjct: 1   MESRREKSSSGEIFSFPSTPVQDQD--SDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  SFPPQPIGVYTVDVSRQTSRTSSVGSKDSFMSSRSNSTNSRSSSSCGSSTSARTSSSDNN 120

Query: 121 ---------------KKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKI 169
                          KKS KSSVSAQVYGSSQRWQFIASV VP TLSRENSRRKK+VEKI
Sbjct: 121 NNNVDIRSSRFSSYQKKSQKSSVSAQVYGSSQRWQFIASVSVPVTLSRENSRRKKSVEKI 180

[Close]

BLAST of Cp4.1LG02g01750.1 vs. NCBI nr
Match: XP_008463678.1 (PREDICTED: probable membrane-associated kinase regulator 1 [Cucumis melo] >KAA0066822.1 putative membrane-associated kinase regulator 1 [Cucumis melo var. makuwa] >TYK27969.1 putative membrane-associated kinase regulator 1 [Cucumis melo var. makuwa])

HSP 1 Score: 227 bits (579), Expect = 6.52e-72
Identity = 147/251 (58.57%), Postives = 153/251 (60.96%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLF-------- 60
           MESRRE  SS EIFSFPSTPVQDQD D DFEFGSITPDSPSTFNNSPADHLF        
Sbjct: 1   MESRRENGSSAEIFSFPSTPVQDQDSD-DFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  SFPPQPISVYAVDVASRQTSRTSSVGSKDSFLSSRSNSTNSRSSSSCGSSTSARTSSSDN 120

Query: 121 ------------------KKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAV 165
                             KKS KSSVSAQVYGS QRWQFIASV VPT+LSRENSRRKK+V
Sbjct: 121 NNSNNNLEIRSSRFSSYQKKSQKSSVSAQVYGSCQRWQFIASVSVPTSLSRENSRRKKSV 180

[Close]

BLAST of Cp4.1LG02g01750.1 vs. ExPASy TrEMBL
Match: A0A6J1FSH9 (pre-mRNA-splicing factor CWC22 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446467 PE=4 SV=1)

HSP 1 Score: 281 bits (720), Expect = 7.26e-94
Identity = 169/244 (69.26%), Postives = 169/244 (69.26%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLF-------- 60
           MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLF        
Sbjct: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS 120

Query: 121 ------KKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 170
                 KKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN
Sbjct: 121 RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 180

[Close]

BLAST of Cp4.1LG02g01750.1 vs. ExPASy TrEMBL
Match: A0A6J1J3G5 (pre-mRNA-splicing factor CWC22 homolog OS=Cucurbita maxima OX=3661 GN=LOC111480935 PE=4 SV=1)

HSP 1 Score: 268 bits (685), Expect = 1.48e-88
Identity = 167/245 (68.16%), Postives = 167/245 (68.16%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLF-------- 60
           MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLF        
Sbjct: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS 120

Query: 121 ------KKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 170
                 KKSPKSSVSAQVYGSSQRWQFIASVP   TLSRENSRRKKAVEKIGGKSDLRRN
Sbjct: 121 RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPA--TLSRENSRRKKAVEKIGGKSDLRRN 180

[Close]

BLAST of Cp4.1LG02g01750.1 vs. ExPASy TrEMBL
Match: A0A5D3DWZ9 (Putative membrane-associated kinase regulator 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001730 PE=4 SV=1)

HSP 1 Score: 227 bits (579), Expect = 3.15e-72
Identity = 147/251 (58.57%), Postives = 153/251 (60.96%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLF-------- 60
           MESRRE  SS EIFSFPSTPVQDQD D DFEFGSITPDSPSTFNNSPADHLF        
Sbjct: 1   MESRRENGSSAEIFSFPSTPVQDQDSD-DFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  SFPPQPISVYAVDVASRQTSRTSSVGSKDSFLSSRSNSTNSRSSSSCGSSTSARTSSSDN 120

Query: 121 ------------------KKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAV 165
                             KKS KSSVSAQVYGS QRWQFIASV VPT+LSRENSRRKK+V
Sbjct: 121 NNSNNNLEIRSSRFSSYQKKSQKSSVSAQVYGSCQRWQFIASVSVPTSLSRENSRRKKSV 180

[Close]

BLAST of Cp4.1LG02g01750.1 vs. ExPASy TrEMBL
Match: A0A1S3CKA5 (probable membrane-associated kinase regulator 1 OS=Cucumis melo OX=3656 GN=LOC103501769 PE=4 SV=1)

HSP 1 Score: 227 bits (579), Expect = 3.15e-72
Identity = 147/251 (58.57%), Postives = 153/251 (60.96%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLF-------- 60
           MESRRE  SS EIFSFPSTPVQDQD D DFEFGSITPDSPSTFNNSPADHLF        
Sbjct: 1   MESRRENGSSAEIFSFPSTPVQDQDSD-DFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  SFPPQPISVYAVDVASRQTSRTSSVGSKDSFLSSRSNSTNSRSSSSCGSSTSARTSSSDN 120

Query: 121 ------------------KKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAV 165
                             KKS KSSVSAQVYGS QRWQFIASV VPT+LSRENSRRKK+V
Sbjct: 121 NNSNNNLEIRSSRFSSYQKKSQKSSVSAQVYGSCQRWQFIASVSVPTSLSRENSRRKKSV 180

[Close]

BLAST of Cp4.1LG02g01750.1 vs. ExPASy TrEMBL
Match: A0A0A0L251 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G631560 PE=4 SV=1)

HSP 1 Score: 214 bits (544), Expect = 6.20e-67
Identity = 146/252 (57.94%), Postives = 150/252 (59.52%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLF-------- 60
           MESRRE  SS EIFSFPSTPV DQD  SDFEFGSITPDSPSTFNNSPADHLF        
Sbjct: 3   MESRRENGSSAEIFSFPSTPVLDQD--SDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 62

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 63  SFPPQPISVYAVDLASRQTSRTSSVGSKDSFMSSRSNSTNSRSSSSCGSSTSARTSSSDN 122

Query: 121 ------------------KKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAV 165
                             KKS KSSVSAQVYGS QRWQFIASV VPT+LSRENSRRKK+V
Sbjct: 123 SNNNNNLEIRSSRFSSYQKKSQKSSVSAQVYGSCQRWQFIASVSVPTSLSRENSRRKKSV 182

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g01750.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g01750.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525336.1	1.83e-94	69.67	pre-mRNA-splicing factor CWC22 homolog [Cucurbita pepo subsp. pepo] >KAG6607885....	[more]
XP_022941070.1	1.50e-93	69.26	pre-mRNA-splicing factor CWC22 homolog [Cucurbita moschata]	[more]
XP_022981938.1	3.06e-88	68.16	pre-mRNA-splicing factor CWC22 homolog [Cucurbita maxima]	[more]
XP_038899281.1	5.93e-72	59.62	probable membrane-associated kinase regulator 1 [Benincasa hispida]	[more]
XP_008463678.1	6.52e-72	58.57	PREDICTED: probable membrane-associated kinase regulator 1 [Cucumis melo] >KAA00...	[more]

BLAST of Cp4.1LG02g01750.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FSH9	7.26e-94	69.26	pre-mRNA-splicing factor CWC22 homolog OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1J3G5	1.48e-88	68.16	pre-mRNA-splicing factor CWC22 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114809...	[more]
A0A5D3DWZ9	3.15e-72	58.57	Putative membrane-associated kinase regulator 1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3CKA5	3.15e-72	58.57	probable membrane-associated kinase regulator 1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0L251	6.20e-67	57.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G631560 PE=4 SV=1	[more]

BLAST of Cp4.1LG02g01750.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG02g01750	Cp4.1LG02g01750	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g01750.1:exon:002	Cp4.1LG02g01750.1:exon:002	exon
Cp4.1LG02g01750.1:exon:001	Cp4.1LG02g01750.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g01750.1:cds:002	Cp4.1LG02g01750.1:cds:002	CDS
Cp4.1LG02g01750.1:cds:001	Cp4.1LG02g01750.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g01750.1	Cp4.1LG02g01750.1-protein	polypeptide