Cp4.1LG01g23550.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g23550.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRibosomal RNA-processing protein 8
LocationCp4.1LG01: 19579948 .. 19584288 (-)
Sequence length1414
RNA-Seq ExpressionCp4.1LG01g23550.1
SyntenyCp4.1LG01g23550.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAAAAAAACCGAACCAGATCAGAGACGGTTTGTTCCATTAAATAAACCGAATGCAGTCGGTTCGGATCAGTTTTACTTCCATAGAATCAACTATTAACCGAACCGAACTTTCGGCCTCCCTTGAGGTGGGTTTTGCTAAACTCCTAACACAACGCGCGCGCCCTAGTTCCAGTTACATTTCGATCTCCCCTCTTCTCAACGCGAGTTTGTTCTTCAAGGTTTCCTCGTACAACAATGGTGGGCGAGGGCCGCTCAAGCAAAAAGCGCAAGAGGGCGATGCGTCGTGGAGCAGACAAAAGCCAAGACATCGTTGTTTCTGGTTCTTCCGACGCCACAAAATCTCAGAGGCTTTCCGGTTCGTCTAGTTTTCTCGATAAGGTTCGACTGATTTTTTAAATTAATCTCGTTCTGAAATCAATTGGTTTTGGGAATTTAAGGATTAACTGAATGGTTGGGTGATGTTGCAGATGCGAGCTCGTTTGTCAGGAGGGCATTTCAGGATGCTTAATGAGAAGCTGTATACCTGCACGTAATGGTTTTGTCTTCTATTCTTTTATTTTCGTCTTTTGTTCTAGTTTTTACTGATGAGTTTGTGTGTTTCTTTATGTGTGCACTAAATTTTGAGTCTCAAGTTTATGTTATCTCAAAATTTTCAGTTTTCTATCAGCTGAATCTTGAAACAGAGTCATTGAACTTGAGTTTTATCAATTTATTTTTAAATCAGACCCACATTGTTTGAAACCAATTGATCTTTTTTTTTTTTTTTTTTTNTTATTGAACTTGAGTTTTATCAATTTATTTTTAAATCAGACCCACATTGTTTGAAACCAATTGATCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCAGAGGGGAAGAGGCGCTTAGTTATTTCAAAGAAGACCAGGTTCTGTTTGATGTTGTAAGTTCTGCCCGTCTGTTCTTGCTTCCTAAACGTAGTTTCTGTTACTATTTAAGAACTAGTTTCTTCACGCGATGCTCACATCAGAAGTTTATCTCTTTCTTCACAGCAAGTATTTTCAATAGATGAAGCTTTAATGTTGAGTATATAATCATGAATATGGAATTTCTATGCACTGATCCTTGAGAAAGTTTTAGACGTAAATTGCATGTACCAGGCCTAGGACTAGGGTTAATTAACGTTTTGATGGGTAGTATCATACAGGATACCAAGAGCAAATGTCGCATTGGCCTGAGCTGCCTGTGAATTTAATCATAAAATGGCTGAAAGAGCACGATCCTTCATTTATGGTAGCTGATTTTGGCTGTGGTGAGTGTTAGAAAAAAATCTTTTGTTTGCCTTTCGTTACTAAATATTGATCAAGTATTTGATCCTTTAAGAACATTCATTCTTATTTGTTCATTTATCTCTTCTTTCCTTCAAACTGAATTACAGGGGATGCACGCCTTGCTAAAAATGTGAAGAATAAAGTTTTCTCGTTTGATCTGGTTTCCAAAGATCCTTCTGTTGTTGCTTGTGATATGTCAAATGTGCGCACTCTATTTGAACTCATTGTCATCAGATGCATTCAGACATATAACTGCATTTCATGCATGAAAGTTAGCCATATTGTTATCATTTTCCCCTTGCAGGAGATCGTGCAGCTGTCTTATAAAGTAGTATTGGTTTTGCTAAAGCTCAGTTGTTACTTTTTACTTTTTAACAACTAGCAAGTTGTTTTAAAAAAAAAAATTACACTCCTATGGTATTAAATTTATTTTATTTTTACATTTGGCAACACATGGTGACAGCCCAAGCTCACCGTTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGAGCTTCCCCTCAAGGTTTTTAAAATGCGTCTGCTAGGGAGAGGTTTCCACACCCTTGTAAAGGATGCTTAGTTCCTTCTCCAACTAATGCCCTTTGGGCCCCAGCGTCCTTGCTAGCACTCGTTCCCCACTTGATCTCACAATCCACCTCCCTTCAGGGCCAACGTCCTTGCTAGCACTCATTCCTCTCTCCAATCGATGTGAGATCTCTAAATCCACCCCCTTCGATACCCAGCGTTCTCGTTGGCACACCACTCGATGTCTGGTTCTAATACTATTTGTAATCGCTCATGCCCACTACTAGCAGATATTGTCCTTTTTGGACTTTCTCTTTTGAGCTTCATCTCAAGGTTTTGAAAACATGTCTACTAGGGAGAGGTTTCCACACCCTTCATAGAGAATGCCTAGTTCCTTCTCCAACCGATGTGAGATCTCACAATCCACCCCCTTCGGGGCCCAGCGTCCTCGCTGGCACTCGTTCCTCTCTTCAATCGATGTGGGATCTCACACATTGNACACCCTTGTAAAGGATGCTTAGTTCCCTCTCCAACTAATGCCCTTTGGGCCCCAGCGTCCTTGCTAGCACTCGTTCCCCACTTGATCTCACAATCCACCTCCCTTCGCGGCCAACGTCCTTGCTAGCACTCATTCCTCTCTCCAATCGATGTGAGATCTCTAAATCCACCCCCTTCGATACCCAGCGTTCTCGTTGGCACACCACTCGATGTCTGGTTCTAATACCATTTGTAACCGCTCATGCCCACTACTAGCAGATATTGTCCTTTTTGGACTTTCTCTTTTGGGCTTCATCTCAAGGTTTTGAAAACATGTCTACTAGGGAGAGGTTTCCACACCCTTCATAGAGAATGCCTAGTTCCTTCTCCAACCGATGTGAGATCTCACAATCCACCCCCTTCGGGGCCCAGCGTCCTCGTTGGCACTCGTTCCTCTCTTCAATCGATGTGGGATCTCACACATTGATTAGAATCAACCTTGGGAGACTGAGTCATGACTCTCATGGTAAATTGCTATTAGTGATTGGAGGGGGACGTAAAGAAGATGATAACTTGTGTGGTACATAAATGTCAACTATCACACTCCTTATTACATACAGCTATGGTTTAGAGTAATTGGATGATATAATCTATTTCATCTGAACAGGTGCTGTTTTAGAATGATATTAGCTATCTATATTAAAAAAAATTGAGGACTTGTCGAGATTAGCTGGATAATTGATATAACAGTGCTTTGAAACATATGCCATTTATTTCTAATCGTGTTATTTGAGCAACCATTGTTGCTATCCTGTTCTACCAAGAATCCCCGTGCTGATGATTATATATATATGTCCATAGGAGCATTACATCATACCCATCACTTTTATTTTTCTGTCCATGAAATTTATATTAATCTCATTGGCTGTTATCTTCGAAAAAGAAACCTCTAAACGCTGGCTAATGTTCATGACCTATGGCAGACACCTCTGGACTCTTCATCTGTGGATGTTGCTGTGTTTTGTCTGTCACTTATGGGGATCAATTATGAAAGTTACTTGGCAGAAGCACAAAGAGTACTTAAACCACGGTTGGTGGGCTACCTTTTGGCCCTCTATTTGTGTAATTGTCTTTCACTTGGCGGCTGAACTTTCTGTTTCTATGCGCAGTGGATGGCTTCTAATAGCAGAAGTTAAAAGCAGATTTGACCCAAGCAATGGAGGAGCCGATCCCAAAAAGTTCATAAAGGCTGTTTGTGAGCTAGGTTTTGTCTCAGCTTTGAAGGTATATTACTTCTCTGTTGCTAATTATCCTTTTCTTTCTTGCTGCTAATTTATAAGTATCAATCATGTGCAGGACTTCTCAAACAAGATGTTTATCTTGTTATACTTCAAGAAAAAGGTCTGTAAATCCTCACGTTCTGCCTCTCATTTGTACTCCACCACTGGGTTTAATCATCATTTTGCTTTGTGTTCTACAGGATGAGAAAATTTCTACAGAGAAAGCCATCGATTGGCCACAGCTAAAACCTTGTTTATACAAACGTCGCTGAGTTTGCTATTATTTCTTTGTCGTGTTCAAAAAATTCTATATTATATAATCTTAATGGAAATCAATCTGTAGTTCATTGTTTTACAGTGGAATGTTTGTCTTAGTTGAGCAATTACTGAAGCCTGAAGCTTTCTTGGGCCTTCATCTCTTCAAAAAGTGTGTTCAGTGTCGGTGGGCGATTCATCCTTTGTTTGGTAATCTGTTAGATTGGGATTCATCCTTTTTTTAGAATATTTTTTGTTAGTTTCTGAATTTTCAAAGTTTTAATCATCATTGNCTTGTTTGGTAATCTGTTAGATTGGGATTCATCCTTTTTTTAGAATTTTTTTTGTTAGTTTCTGAATTTTCAAAGTTTTAATCATCATTGACGATGATTTTTAAAATTTTAATTAATACTTTATGTACATTTGAATTAAATACTCCATTAGTGTTTTCTTTTTCCTATAATAATATTCATTAAAAACT

mRNA sequence

AACAAAAAAACCGAACCAGATCAGAGACGGTTTGTTCCATTAAATAAACCGAATGCAGTCGGTTCGGATCAGTTTTACTTCCATAGAATCAACTATTAACCGAACCGAACTTTCGGCCTCCCTTGAGGTTTCCTCGTACAACAATGGTGGGCGAGGGCCGCTCAAGCAAAAAGCGCAAGAGGGCGATGCGTCGTGGAGCAGACAAAAGCCAAGACATCGTTGTTTCTGGTTCTTCCGACGCCACAAAATCTCAGAGGCTTTCCGGTTCGTCTAGTTTTCTCGATAAGATGCGAGCTCGTTTGTCAGGAGGGCATTTCAGGATGCTTAATGAGAAGCTGTATACCTGCACAGGGGAAGAGGCGCTTAGTTATTTCAAAGAAGACCAGGTTCTGTTTGATGTTTATCATACAGGATACCAAGAGCAAATGTCGCATTGGCCTGAGCTGCCTGTGAATTTAATCATAAAATGGCTGAAAGAGCACGATCCTTCATTTATGGTAGCTGATTTTGGCTGTGGGGATGCACGCCTTGCTAAAAATGTGAAGAATAAAGTTTTCTCGTTTGATCTGGTTTCCAAAGATCCTTCTGTTGTTGCTTGTGATATGTCAAATACACCTCTGGACTCTTCATCTGTGGATGTTGCTGTGTTTTGTCTGTCACTTATGGGGATCAATTATGAAAGTTACTTGGCAGAAGCACAAAGAGTACTTAAACCACGTGGATGGCTTCTAATAGCAGAAGTTAAAAGCAGATTTGACCCAAGCAATGGAGGAGCCGATCCCAAAAAGTTCATAAAGGCTGTTTGTGAGCTAGGTTTTGTCTCAGCTTTGAAGGACTTCTCAAACAAGATGTTTATCTTGTTATACTTCAAGAAAAAGGATGAGAAAATTTCTACAGAGAAAGCCATCGATTGGCCACAGCTAAAACCTTGTTTATACAAACGTCGCTGAGTTTGCTATTATTTCTTTGTCGTGTTCAAAAAATTCTATATTATATAATCTTAATGGAAATCAATCTGTAGTTCATTGTTTTACAGTGGAATGTTTGTCTTAGTTGAGCAATTACTGAAGCCTGAAGCTTTCTTGGGCCTTCATCTCTTCAAAAAGTGTGTTCAGTGTCGGTGGGCGATTCATCCTTTGTTTGGTAATCTGTTAGATTGGGATTCATCCTTTTTTTAGAATATTTTTTGTTAGTTTCTGAATTTTCAAAGTTTTAATCATCATTGNCTTGTTTGGTAATCTGTTAGATTGGGATTCATCCTTTTTTTAGAATTTTTTTTGTTAGTTTCTGAATTTTCAAAGTTTTAATCATCATTGACGATGATTTTTAAAATTTTAATTAATACTTTATGTACATTTGAATTAAATACTCCATTAGTGTTTTCTTTTTCCTATAATAATATTCATTAAAAACT

Coding sequence (CDS)

ATGGTGGGCGAGGGCCGCTCAAGCAAAAAGCGCAAGAGGGCGATGCGTCGTGGAGCAGACAAAAGCCAAGACATCGTTGTTTCTGGTTCTTCCGACGCCACAAAATCTCAGAGGCTTTCCGGTTCGTCTAGTTTTCTCGATAAGATGCGAGCTCGTTTGTCAGGAGGGCATTTCAGGATGCTTAATGAGAAGCTGTATACCTGCACAGGGGAAGAGGCGCTTAGTTATTTCAAAGAAGACCAGGTTCTGTTTGATGTTTATCATACAGGATACCAAGAGCAAATGTCGCATTGGCCTGAGCTGCCTGTGAATTTAATCATAAAATGGCTGAAAGAGCACGATCCTTCATTTATGGTAGCTGATTTTGGCTGTGGGGATGCACGCCTTGCTAAAAATGTGAAGAATAAAGTTTTCTCGTTTGATCTGGTTTCCAAAGATCCTTCTGTTGTTGCTTGTGATATGTCAAATACACCTCTGGACTCTTCATCTGTGGATGTTGCTGTGTTTTGTCTGTCACTTATGGGGATCAATTATGAAAGTTACTTGGCAGAAGCACAAAGAGTACTTAAACCACGTGGATGGCTTCTAATAGCAGAAGTTAAAAGCAGATTTGACCCAAGCAATGGAGGAGCCGATCCCAAAAAGTTCATAAAGGCTGTTTGTGAGCTAGGTTTTGTCTCAGCTTTGAAGGACTTCTCAAACAAGATGTTTATCTTGTTATACTTCAAGAAAAAGGATGAGAAAATTTCTACAGAGAAAGCCATCGATTGGCCACAGCTAAAACCTTGTTTATACAAACGTCGCTGA

Protein sequence

MVGEGRSSKKRKRAMRRGADKSQDIVVSGSSDATKSQRLSGSSSFLDKMRARLSGGHFRMLNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVADFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVAVFCLSLMGINYESYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILLYFKKKDEKISTEKAIDWPQLKPCLYKRR
Homology
[Close]
BLAST of Cp4.1LG01g23550.1 vs. ExPASy Swiss-Prot
Match: Q84JC0 (Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana OX=3702 GN=At5g40530 PE=2 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 8.5e-100
Identity = 183/283 (64.66%), Postives = 218/283 (77.03%), Query Frame = 0 

Query: 4   EGRSSKKRKRAMRRGADKSQDIVV---------SGSSDATKSQRLSGS---------SSF 63
           E ++S+ RKR  +R    S++  +           +   TK+Q+  GS         S+F
Sbjct: 5   ENKTSRNRKRKRQRNPKPSKEEPIETTPKNQNEKKNQRDTKNQQHGGSSAPSKRPKPSNF 64

Query: 64  LDKMRARLSGGHFRMLNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNL 123
           LD +R RLSGG FRMLNEKLYTC+G+EAL YFKED  +FD+YHTGYQ+QMS+WPELPVN 
Sbjct: 65  LDALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVNS 124

Query: 124 IIKWLKEHDPSFMVADFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVD 183
           II WL  +  S +VADFGCGDAR+AK+VKNKVFSFDLVSK+PSV+ACDMSNT L+SSSVD
Sbjct: 125 IINWLLSNSSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLESSSVD 184

Query: 184 VAVFCLSLMGINYESYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGF 243
           VAVFCLSLMG NY SY+ EA RVL+P G LLIAEVKSRFDP+NGGADPK F+KAVC+LGF
Sbjct: 185 VAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGADPKDFVKAVCDLGF 244

Query: 244 VSALKDFSNKMFILLYFKKKDEKISTEKAIDWPQLKPCLYKRR 269
            S LKDFSNKMFIL +FKKK++  S +K I WP+LK CLYKRR
Sbjct: 245 TSVLKDFSNKMFILFHFKKKEQMNSNQKIIKWPELKACLYKRR 287

[Close]
BLAST of Cp4.1LG01g23550.1 vs. ExPASy Swiss-Prot
Match: O43159 (Ribosomal RNA-processing protein 8 OS=Homo sapiens OX=9606 GN=RRP8 PE=1 SV=2)

HSP 1 Score: 205.3 bits (521), Expect = 8.6e-52
Identity = 108/222 (48.65%), Postives = 137/222 (61.71%), Query Frame = 0 

Query: 48  KMRARLSGGHFRMLNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLII 107
           +M  RL G  FR LNE+LY+     A   F+ED   F +YH G+Q Q+  WP  PV+ I 
Sbjct: 241 RMAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIA 300

Query: 108 KWLKEHDPSFMVADFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVA 167
           + L++   S +VADFGCGD RLA +++N V  FDL S DP V  CDM+  PL+  SVDVA
Sbjct: 301 RDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVA 360

Query: 168 VFCLSLMGINYESYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVS 227
           VFCLSLMG N   +L EA RVLKP G L +AEV SRF+      D + F++AV +LGF  
Sbjct: 361 VFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DVRTFLRAVTKLGFKI 420

Query: 228 ALKDFSNKMFILLYFKKKDEKISTEKA-IDWPQLKPCLYKRR 269
             KD +N  F L  F+K    +   KA +   QL+PCLYKRR
Sbjct: 421 VSKDLTNSHFFLFDFQKTGPPLVGPKAQLSGLQLQPCLYKRR 456

[Close]
BLAST of Cp4.1LG01g23550.1 vs. ExPASy Swiss-Prot
Match: Q9DB85 (Ribosomal RNA-processing protein 8 OS=Mus musculus OX=10090 GN=Rrp8 PE=1 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 8.1e-50
Identity = 106/222 (47.75%), Postives = 135/222 (60.81%), Query Frame = 0 

Query: 48  KMRARLSGGHFRMLNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLII 107
           +M  RL G  FR LNE+LY+     A   F+ED   F +YH G+Q Q+  WP  PV+ I 
Sbjct: 242 RMTQRLDGARFRYLNEQLYSGPSSAARRLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIA 301

Query: 108 KWLKEHDPSFMVADFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVA 167
           K L++   S +VADFGCGD RLA +V+N V  FDL S DP V  CDM+  PL+  SVDVA
Sbjct: 302 KDLRQKPASLVVADFGCGDCRLASSVRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVA 361

Query: 168 VFCLSLMGINYESYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVS 227
           VFCLSLMG N   +L EA RVLK  G L +AEV SRF+      D + F+ AV +LGF  
Sbjct: 362 VFCLSLMGTNIRDFLEEANRVLKTGGLLKVAEVSSRFE------DIRTFLGAVTKLGFKI 421

Query: 228 ALKDFSNKMFILLYFKKK-DEKISTEKAIDWPQLKPCLYKRR 269
             KD +N  F L  F+K    ++  +  +   +L+PCLYKRR
Sbjct: 422 IYKDLTNSHFFLFDFEKTGPPRVGPKAQLSGLKLQPCLYKRR 457

[Close]
BLAST of Cp4.1LG01g23550.1 vs. ExPASy Swiss-Prot
Match: Q5U4F0 (Ribosomal RNA-processing protein 8 OS=Rattus norvegicus OX=10116 GN=Rrp8 PE=1 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 8.1e-50
Identity = 105/222 (47.30%), Postives = 135/222 (60.81%), Query Frame = 0 

Query: 48  KMRARLSGGHFRMLNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLII 107
           +M  RL G  FR LNE+LY+     A   F+ED   F +YH G+Q Q+  WP  PV+ I 
Sbjct: 242 RMTQRLDGARFRYLNEQLYSGPSSAAQCLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIA 301

Query: 108 KWLKEHDPSFMVADFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVA 167
           K L++   S +VADFGCGD RLA +V+N V  FDL + DP V  CDM+  PL+  SVDVA
Sbjct: 302 KDLRQKPASLVVADFGCGDCRLASSVRNPVHCFDLAALDPRVTVCDMAQVPLEDESVDVA 361

Query: 168 VFCLSLMGINYESYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVS 227
           VFCLSLMG N   +L EA RVLKP G L +AEV SRF+      D + F+ AV +LGF  
Sbjct: 362 VFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DIRTFLGAVTKLGFKV 421

Query: 228 ALKDFSNKMFILLYFKKK-DEKISTEKAIDWPQLKPCLYKRR 269
             KD +N  F L  F+K    ++  +  +   +L+PCLYK R
Sbjct: 422 IYKDLTNSHFFLFDFEKTGPPRVGPKAQLSGLKLQPCLYKHR 457

[Close]
BLAST of Cp4.1LG01g23550.1 vs. ExPASy Swiss-Prot
Match: O44410 (Ribosomal RNA-processing protein 8 OS=Caenorhabditis elegans OX=6239 GN=T07A9.8 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 7.6e-48
Identity = 109/267 (40.82%), Postives = 161/267 (60.30%), Query Frame = 0 

Query: 7   SSKKRKRAMRRGADKSQDIVVSGSSDATKSQRLSGSSSFLD---KMRARLSGGHFRMLNE 66
           + KKRKR  ++   K +   V+G +  T++  ++ +    D   + + RL  G FR LNE
Sbjct: 88  TKKKRKRGPKKKKFKPE---VAGKAAETENDDVAAAPEEADPIAEAKKRLDAGRFRFLNE 147

Query: 67  KLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVADFG 126
           KLYTCTG EA  +FKED   FD+YH G+ +Q+  WP  P+  II+WL+       V D G
Sbjct: 148 KLYTCTGSEAFDFFKEDPTAFDLYHKGFADQVKKWPNHPLREIIRWLQSKPDQQSVFDLG 207

Query: 127 CGDARLAKNV--KNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVAVFCLSLMGINYESY 186
           CG+A++A+ V  K+K+ SFDLV+ +  V +CDMS  P + SS D+ ++CLSLMG N   +
Sbjct: 208 CGEAKIAEAVGEKHKIRSFDLVAVNDRVESCDMSKLPAEDSSADIVIYCLSLMGTNLYDF 267

Query: 187 LAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILLY 246
           + EA+RVLK  G L IAEV SRF         K+F +A+ ++GF  + +      F+++ 
Sbjct: 268 IREARRVLKIGGILKIAEVTSRF------VSIKQFCEAITKMGFEQSHRRELTDYFMMME 327

Query: 247 FKKKDEKISTEKAIDWPQLKPCLYKRR 269
           FKK  EK+  ++     +LKPCLYK+R
Sbjct: 328 FKKV-EKVEQKRPYGL-KLKPCLYKKR 343

[Close]
BLAST of Cp4.1LG01g23550.1 vs. NCBI nr
Match: XP_023553583.1 (ribosomal RNA-processing protein 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 537 bits (1384), Expect = 1.28e-192
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0 

Query: 1   MVGEGRSSKKRKRAMRRGADKSQDIVVSGSSDATKSQRLSGSSSFLDKMRARLSGGHFRM 60
           MVGEGRSSKKRKRAMRRGADKSQDIVVSGSSDATKSQRLSGSSSFLDKMRARLSGGHFRM
Sbjct: 1   MVGEGRSSKKRKRAMRRGADKSQDIVVSGSSDATKSQRLSGSSSFLDKMRARLSGGHFRM 60

Query: 61  LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA 120
           LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA
Sbjct: 61  LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA 120

Query: 121 DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVAVFCLSLMGINYES 180
           DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVAVFCLSLMGINYES
Sbjct: 121 DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVAVFCLSLMGINYES 180

Query: 181 YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILL 240
           YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILL
Sbjct: 181 YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILL 240

Query: 241 YFKKKDEKISTEKAIDWPQLKPCLYKRR 268
           YFKKKDEKISTEKAIDWPQLKPCLYKRR
Sbjct: 241 YFKKKDEKISTEKAIDWPQLKPCLYKRR 268

[Close]
BLAST of Cp4.1LG01g23550.1 vs. NCBI nr
Match: XP_022991034.1 (ribosomal RNA-processing protein 8-like [Cucurbita maxima])

HSP 1 Score: 532 bits (1370), Expect = 1.74e-190
Identity = 265/268 (98.88%), Postives = 267/268 (99.63%), Query Frame = 0 

Query: 1   MVGEGRSSKKRKRAMRRGADKSQDIVVSGSSDATKSQRLSGSSSFLDKMRARLSGGHFRM 60
           MVGEGRSSKKRKRAMRRGADK+QDIVVSGSSDATKSQRLSGSSSFLDKMRARLSGGHFRM
Sbjct: 1   MVGEGRSSKKRKRAMRRGADKNQDIVVSGSSDATKSQRLSGSSSFLDKMRARLSGGHFRM 60

Query: 61  LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA 120
           LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA
Sbjct: 61  LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA 120

Query: 121 DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVAVFCLSLMGINYES 180
           DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVAVFCLSLMGINYES
Sbjct: 121 DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVAVFCLSLMGINYES 180

Query: 181 YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILL 240
           YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADP+KFIKAVCELGFVSALKDFSNKMFILL
Sbjct: 181 YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPEKFIKAVCELGFVSALKDFSNKMFILL 240

Query: 241 YFKKKDEKISTEKAIDWPQLKPCLYKRR 268
           YFKKKDEKIST KAIDWPQLKPCLYKRR
Sbjct: 241 YFKKKDEKISTGKAIDWPQLKPCLYKRR 268

[Close]
BLAST of Cp4.1LG01g23550.1 vs. NCBI nr
Match: KAG6602415.1 (Ribosomal RNA-processing protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 528 bits (1361), Expect = 4.11e-189
Identity = 263/268 (98.13%), Postives = 265/268 (98.88%), Query Frame = 0 

Query: 1   MVGEGRSSKKRKRAMRRGADKSQDIVVSGSSDATKSQRLSGSSSFLDKMRARLSGGHFRM 60
           MVGEGRSSKKRKRAMRRGADK+QDIVVSGSSDA KSQRLSGSSSFLDKMRARLSGGHFRM
Sbjct: 1   MVGEGRSSKKRKRAMRRGADKNQDIVVSGSSDAPKSQRLSGSSSFLDKMRARLSGGHFRM 60

Query: 61  LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA 120
           LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFM+A
Sbjct: 61  LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMIA 120

Query: 121 DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVAVFCLSLMGINYES 180
           DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMS TPLDSSSVDVAVFCLSLMGINYES
Sbjct: 121 DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSKTPLDSSSVDVAVFCLSLMGINYES 180

Query: 181 YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILL 240
           YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILL
Sbjct: 181 YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILL 240

Query: 241 YFKKKDEKISTEKAIDWPQLKPCLYKRR 268
           YFKKKDEKIST KAIDWPQLKPCLYKRR
Sbjct: 241 YFKKKDEKISTGKAIDWPQLKPCLYKRR 268

[Close]
BLAST of Cp4.1LG01g23550.1 vs. NCBI nr
Match: XP_022923770.1 (ribosomal RNA-processing protein 8-like [Cucurbita moschata])

HSP 1 Score: 524 bits (1350), Expect = 1.95e-187
Identity = 263/268 (98.13%), Postives = 264/268 (98.51%), Query Frame = 0 

Query: 1   MVGEGRSSKKRKRAMRRGADKSQDIVVSGSSDATKSQRLSGSSSFLDKMRARLSGGHFRM 60
           MV EGRSSKKRKRAMRRGADK+QDIVVSGSSDATKSQRLS SSSFLDKMRARLSGGHFRM
Sbjct: 1   MVEEGRSSKKRKRAMRRGADKNQDIVVSGSSDATKSQRLSISSSFLDKMRARLSGGHFRM 60

Query: 61  LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA 120
           LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA
Sbjct: 61  LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA 120

Query: 121 DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVAVFCLSLMGINYES 180
           DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMS TPLDSSSVDVAVFCLSLMGINYES
Sbjct: 121 DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSKTPLDSSSVDVAVFCLSLMGINYES 180

Query: 181 YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILL 240
           YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILL
Sbjct: 181 YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILL 240

Query: 241 YFKKKDEKISTEKAIDWPQLKPCLYKRR 268
           YFKKKDEKIST KAIDWPQLKPCLYKRR
Sbjct: 241 YFKKKDEKISTGKAIDWPQLKPCLYKRR 268

[Close]
BLAST of Cp4.1LG01g23550.1 vs. NCBI nr
Match: KAG7033091.1 (Ribosomal RNA-processing protein 8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 496 bits (1276), Expect = 1.15e-175
Identity = 259/299 (86.62%), Postives = 261/299 (87.29%), Query Frame = 0 

Query: 1   MVGEGRSSKKRKRAMRRGADKSQDIVVSGSSDATKSQRLSGSSSFLDKMRARLSGGHFRM 60
           MVGEGRSSKKRKRAMRRGADK+QDIVVSGSSDA KSQRLSGSSSFLDKMRARLSGGHFRM
Sbjct: 1   MVGEGRSSKKRKRAMRRGADKNQDIVVSGSSDAPKSQRLSGSSSFLDKMRARLSGGHFRM 60

Query: 61  LNEKLYTCTGEEALSYFKEDQVLFDVYHTG--------YQEQMSHWPELPVNLIIKWLKE 120
           LNEKLYTCTGEEALSYFKEDQVLFDV  +         YQEQMSHWPELPVNLIIKWLKE
Sbjct: 61  LNEKLYTCTGEEALSYFKEDQVLFDVVSSARLFLLPKRYQEQMSHWPELPVNLIIKWLKE 120

Query: 121 HDPSFMVADFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSN---------------- 180
           HDPSFMVADFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMS                 
Sbjct: 121 HDPSFMVADFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSKVRTLFELIVIRCIETY 180

Query: 181 -------TPLDSSSVDVAVFCLSLMGINYESYLAEAQRVLKPRGWLLIAEVKSRFDPSNG 240
                  TPLDSSSVDVAVFCLSLMGINYESYLAEAQRVLKP GWLLIAEVKSRFDPSNG
Sbjct: 181 NCISCMKTPLDSSSVDVAVFCLSLMGINYESYLAEAQRVLKPSGWLLIAEVKSRFDPSNG 240

Query: 241 GADPKKFIKAVCELGFVSALKDFSNKMFILLYFKKKDEKISTEKAIDWPQLKPCLYKRR 268
           GADPKKFIKAVCELGFVSALKDFSNKMFILLYFKKKDEKIST KAIDWPQLKPCLYKRR
Sbjct: 241 GADPKKFIKAVCELGFVSALKDFSNKMFILLYFKKKDEKISTGKAIDWPQLKPCLYKRR 299

[Close]
BLAST of Cp4.1LG01g23550.1 vs. ExPASy TrEMBL
Match: A0A6J1JTN8 (Ribosomal RNA-processing protein 8 OS=Cucurbita maxima OX=3661 GN=LOC111487746 PE=3 SV=1)

HSP 1 Score: 532 bits (1370), Expect = 8.45e-191
Identity = 265/268 (98.88%), Postives = 267/268 (99.63%), Query Frame = 0 

Query: 1   MVGEGRSSKKRKRAMRRGADKSQDIVVSGSSDATKSQRLSGSSSFLDKMRARLSGGHFRM 60
           MVGEGRSSKKRKRAMRRGADK+QDIVVSGSSDATKSQRLSGSSSFLDKMRARLSGGHFRM
Sbjct: 1   MVGEGRSSKKRKRAMRRGADKNQDIVVSGSSDATKSQRLSGSSSFLDKMRARLSGGHFRM 60

Query: 61  LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA 120
           LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA
Sbjct: 61  LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA 120

Query: 121 DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVAVFCLSLMGINYES 180
           DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVAVFCLSLMGINYES
Sbjct: 121 DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVAVFCLSLMGINYES 180

Query: 181 YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILL 240
           YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADP+KFIKAVCELGFVSALKDFSNKMFILL
Sbjct: 181 YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPEKFIKAVCELGFVSALKDFSNKMFILL 240

Query: 241 YFKKKDEKISTEKAIDWPQLKPCLYKRR 268
           YFKKKDEKIST KAIDWPQLKPCLYKRR
Sbjct: 241 YFKKKDEKISTGKAIDWPQLKPCLYKRR 268

[Close]
BLAST of Cp4.1LG01g23550.1 vs. ExPASy TrEMBL
Match: A0A6J1ECU8 (Ribosomal RNA-processing protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111431375 PE=3 SV=1)

HSP 1 Score: 524 bits (1350), Expect = 9.46e-188
Identity = 263/268 (98.13%), Postives = 264/268 (98.51%), Query Frame = 0 

Query: 1   MVGEGRSSKKRKRAMRRGADKSQDIVVSGSSDATKSQRLSGSSSFLDKMRARLSGGHFRM 60
           MV EGRSSKKRKRAMRRGADK+QDIVVSGSSDATKSQRLS SSSFLDKMRARLSGGHFRM
Sbjct: 1   MVEEGRSSKKRKRAMRRGADKNQDIVVSGSSDATKSQRLSISSSFLDKMRARLSGGHFRM 60

Query: 61  LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA 120
           LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA
Sbjct: 61  LNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWLKEHDPSFMVA 120

Query: 121 DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVDVAVFCLSLMGINYES 180
           DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMS TPLDSSSVDVAVFCLSLMGINYES
Sbjct: 121 DFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSKTPLDSSSVDVAVFCLSLMGINYES 180

Query: 181 YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILL 240
           YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILL
Sbjct: 181 YLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILL 240

Query: 241 YFKKKDEKISTEKAIDWPQLKPCLYKRR 268
           YFKKKDEKIST KAIDWPQLKPCLYKRR
Sbjct: 241 YFKKKDEKISTGKAIDWPQLKPCLYKRR 268

[Close]
BLAST of Cp4.1LG01g23550.1 vs. ExPASy TrEMBL
Match: A0A5A7T472 (Ribosomal RNA-processing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00030 PE=3 SV=1)

HSP 1 Score: 484 bits (1246), Expect = 1.16e-171
Identity = 241/283 (85.16%), Postives = 256/283 (90.46%), Query Frame = 0 

Query: 1   MVGEGRSSKKRKRAMRRGADK---------------SQDIVVSGSSDATKSQRLSGSSSF 60
           M  EGRSSKKRKRA RRG DK               SQDIVVS SSD  K+QR+SGSSSF
Sbjct: 1   MADEGRSSKKRKRAKRRGTDKNKDSTYNLPDATELSSQDIVVSSSSDGKKTQRVSGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEAL+YFKED++LFD+YHTGYQEQM+HWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKLLFDMYHTGYQEQMTHWPELPVNL 120

Query: 121 IIKWLKEHDPSFMVADFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVD 180
           IIKWLKEHDPSF+VADFGCGDARL+KNVKNKVFSFDLVSKDPSV+ACDMSNTPLDS+SVD
Sbjct: 121 IIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSASVD 180

Query: 181 VAVFCLSLMGINYESYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGF 240
           VAVFCLSLMG+NY SYLAEA+RVLKPRGWLLI+EVKSRFDPSNGGADP+KFIKAVCELGF
Sbjct: 181 VAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPQKFIKAVCELGF 240

Query: 241 VSALKDFSNKMFILLYFKKKDEKISTEKAIDWPQLKPCLYKRR 268
           VSALKDFSNKMFILLYFKKKDEK S  K IDWPQLKPCLYKRR
Sbjct: 241 VSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQLKPCLYKRR 283

[Close]
BLAST of Cp4.1LG01g23550.1 vs. ExPASy TrEMBL
Match: A0A1S3C8U7 (Ribosomal RNA-processing protein 8 OS=Cucumis melo OX=3656 GN=LOC103498109 PE=3 SV=1)

HSP 1 Score: 484 bits (1246), Expect = 1.16e-171
Identity = 241/283 (85.16%), Postives = 256/283 (90.46%), Query Frame = 0 

Query: 1   MVGEGRSSKKRKRAMRRGADK---------------SQDIVVSGSSDATKSQRLSGSSSF 60
           M  EGRSSKKRKRA RRG DK               SQDIVVS SSD  K+QR+SGSSSF
Sbjct: 1   MADEGRSSKKRKRAKRRGTDKNKDSTYNLPDATELSSQDIVVSSSSDGKKTQRVSGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEAL+YFKED++LFD+YHTGYQEQM+HWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKLLFDMYHTGYQEQMTHWPELPVNL 120

Query: 121 IIKWLKEHDPSFMVADFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVD 180
           IIKWLKEHDPSF+VADFGCGDARL+KNVKNKVFSFDLVSKDPSV+ACDMSNTPLDS+SVD
Sbjct: 121 IIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSASVD 180

Query: 181 VAVFCLSLMGINYESYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGF 240
           VAVFCLSLMG+NY SYLAEA+RVLKPRGWLLI+EVKSRFDPSNGGADP+KFIKAVCELGF
Sbjct: 181 VAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPQKFIKAVCELGF 240

Query: 241 VSALKDFSNKMFILLYFKKKDEKISTEKAIDWPQLKPCLYKRR 268
           VSALKDFSNKMFILLYFKKKDEK S  K IDWPQLKPCLYKRR
Sbjct: 241 VSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQLKPCLYKRR 283

[Close]
BLAST of Cp4.1LG01g23550.1 vs. ExPASy TrEMBL
Match: A0A6J1C2A0 (Ribosomal RNA-processing protein 8 OS=Momordica charantia OX=3673 GN=LOC111006762 PE=3 SV=1)

HSP 1 Score: 483 bits (1243), Expect = 3.45e-171
Identity = 241/284 (84.86%), Postives = 255/284 (89.79%), Query Frame = 0 

Query: 1   MVGEGRSSKKRKRAMRRGADKSQD----------------IVVSGSSDATKSQRLSGSSS 60
           M  EGRSS+KRKRA RRG DK++D                IVVSGSS   K QR+SGSSS
Sbjct: 1   MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFQRVSGSSS 60

Query: 61  FLDKMRARLSGGHFRMLNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVN 120
           FLDKMRARLSGGHFRM+NEKLYTCTGEEAL+YFKEDQVLFDVYHTGYQEQMSHWPE PVN
Sbjct: 61  FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN 120

Query: 121 LIIKWLKEHDPSFMVADFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSV 180
           LIIKWLKEHDPSF+VADFGCGDARLAKNVKNKVFSFDLVSKDPSV+ACDMSNTPLDSSSV
Sbjct: 121 LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180

Query: 181 DVAVFCLSLMGINYESYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELG 240
           DVAVFCLSLMG+NYESYLAEA+RVLKPRGWLLI+EVKSRFDPSNGGADPKKFIKAVC+LG
Sbjct: 181 DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG 240

Query: 241 FVSALKDFSNKMFILLYFKKKDEKISTEKAIDWPQLKPCLYKRR 268
           FVSALKDFSNKMFILLYFKKKDEKI   K +DWP+LKPCLYKRR
Sbjct: 241 FVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 284

[Close]
BLAST of Cp4.1LG01g23550.1 vs. TAIR 10
Match: AT5G40530.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 364.8 bits (935), Expect = 6.1e-101
Identity = 183/283 (64.66%), Postives = 218/283 (77.03%), Query Frame = 0 

Query: 4   EGRSSKKRKRAMRRGADKSQDIVV---------SGSSDATKSQRLSGS---------SSF 63
           E ++S+ RKR  +R    S++  +           +   TK+Q+  GS         S+F
Sbjct: 5   ENKTSRNRKRKRQRNPKPSKEEPIETTPKNQNEKKNQRDTKNQQHGGSSAPSKRPKPSNF 64

Query: 64  LDKMRARLSGGHFRMLNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNL 123
           LD +R RLSGG FRMLNEKLYTC+G+EAL YFKED  +FD+YHTGYQ+QMS+WPELPVN 
Sbjct: 65  LDALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVNS 124

Query: 124 IIKWLKEHDPSFMVADFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVD 183
           II WL  +  S +VADFGCGDAR+AK+VKNKVFSFDLVSK+PSV+ACDMSNT L+SSSVD
Sbjct: 125 IINWLLSNSSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLESSSVD 184

Query: 184 VAVFCLSLMGINYESYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGF 243
           VAVFCLSLMG NY SY+ EA RVL+P G LLIAEVKSRFDP+NGGADPK F+KAVC+LGF
Sbjct: 185 VAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGADPKDFVKAVCDLGF 244

Query: 244 VSALKDFSNKMFILLYFKKKDEKISTEKAIDWPQLKPCLYKRR 269
            S LKDFSNKMFIL +FKKK++  S +K I WP+LK CLYKRR
Sbjct: 245 TSVLKDFSNKMFILFHFKKKEQMNSNQKIIKWPELKACLYKRR 287

[Close]
BLAST of Cp4.1LG01g23550.1 vs. TAIR 10
Match: AT5G40530.2 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 322.0 bits (824), Expect = 4.5e-88
Identity = 170/283 (60.07%), Postives = 201/283 (71.02%), Query Frame = 0 

Query: 4   EGRSSKKRKRAMRRGADKSQDIVV---------SGSSDATKSQRLSGS---------SSF 63
           E ++S+ RKR  +R    S++  +           +   TK+Q+  GS         S+F
Sbjct: 5   ENKTSRNRKRKRQRNPKPSKEEPIETTPKNQNEKKNQRDTKNQQHGGSSAPSKRPKPSNF 64

Query: 64  LDKMRARLSGGHFRMLNEKLYTCTGEEALSYFKEDQVLFDVYHTGYQEQMSHWPELPVNL 123
           LD +R RLSGG FRMLNEKLYTC+G+EAL YFKED  +FD+YHTGYQ+QMS+WPELPVN 
Sbjct: 65  LDALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVNS 124

Query: 124 IIKWLKEHDPSFMVADFGCGDARLAKNVKNKVFSFDLVSKDPSVVACDMSNTPLDSSSVD 183
           II WL  +  S +VADFGCGDAR+AK+VKNKVFSFDLVSK+PSV+ACDMSNT L+SSSVD
Sbjct: 125 IINWLLSNSSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLESSSVD 184

Query: 184 VAVFCLSLMGINYESYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPKKFIKAVCELGF 243
           VAVFCLSLMG NY SY+ EA RVL+P G LLIAEVKSRFDP+NGGADPK F+KAVC+LGF
Sbjct: 185 VAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGADPKDFVKAVCDLGF 244

Query: 244 VSALK-----------------------DFSNKMFILLYFKKK 246
            S LK                       DFSNKMFIL +FKKK
Sbjct: 245 TSVLKVQSFLLLFFISTIRKKLIWFFEQDFSNKMFILFHFKKK 287

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g23550.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q84JC08.5e-10064.66Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana OX=3702 GN=At5g40530 ... [more]
O431598.6e-5248.65Ribosomal RNA-processing protein 8 OS=Homo sapiens OX=9606 GN=RRP8 PE=1 SV=2[more]
Q9DB858.1e-5047.75Ribosomal RNA-processing protein 8 OS=Mus musculus OX=10090 GN=Rrp8 PE=1 SV=1[more]
Q5U4F08.1e-5047.30Ribosomal RNA-processing protein 8 OS=Rattus norvegicus OX=10116 GN=Rrp8 PE=1 SV... [more]
O444107.6e-4840.82Ribosomal RNA-processing protein 8 OS=Caenorhabditis elegans OX=6239 GN=T07A9.8 ... [more]
BLAST of Cp4.1LG01g23550.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023553583.11.28e-192100.00ribosomal RNA-processing protein 8-like [Cucurbita pepo subsp. pepo][more]
XP_022991034.11.74e-19098.88ribosomal RNA-processing protein 8-like [Cucurbita maxima][more]
KAG6602415.14.11e-18998.13Ribosomal RNA-processing protein 8, partial [Cucurbita argyrosperma subsp. soror... [more]
XP_022923770.11.95e-18798.13ribosomal RNA-processing protein 8-like [Cucurbita moschata][more]
KAG7033091.11.15e-17586.62Ribosomal RNA-processing protein 8 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Cp4.1LG01g23550.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JTN88.45e-19198.88Ribosomal RNA-processing protein 8 OS=Cucurbita maxima OX=3661 GN=LOC111487746 P... [more]
A0A6J1ECU89.46e-18898.13Ribosomal RNA-processing protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111431375... [more]
A0A5A7T4721.16e-17185.16Ribosomal RNA-processing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3C8U71.16e-17185.16Ribosomal RNA-processing protein 8 OS=Cucumis melo OX=3656 GN=LOC103498109 PE=3 ... [more]
A0A6J1C2A03.45e-17184.86Ribosomal RNA-processing protein 8 OS=Momordica charantia OX=3673 GN=LOC11100676... [more]
BLAST of Cp4.1LG01g23550.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G40530.16.1e-10164.66S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [more]
AT5G40530.24.5e-8860.07S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042036Ribosomal RNA-processing protein 8, N-terminal domainGENE3D1.10.10.2150coord: 49..99
e-value: 1.8E-25
score: 90.8
NoneNo IPR availableGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 101..268
e-value: 1.9E-56
score: 192.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableCDDcd02440AdoMet_MTasescoord: 119..197
e-value: 0.00174537
score: 35.0983
IPR007823Ribosomal RNA processing protein 8PFAMPF05148Methyltransf_8coord: 47..268
e-value: 1.9E-77
score: 260.1
IPR007823Ribosomal RNA processing protein 8PANTHERPTHR12787UNCHARACTERIZEDcoord: 20..268
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 84..206

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG01g23550Cp4.1LG01g23550gene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG01g23550.1:three_prime_utr:001Cp4.1LG01g23550.1:three_prime_utr:001three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG01g23550.1:exon:010Cp4.1LG01g23550.1:exon:010exon
Cp4.1LG01g23550.1:exon:009Cp4.1LG01g23550.1:exon:009exon
Cp4.1LG01g23550.1:exon:008Cp4.1LG01g23550.1:exon:008exon
Cp4.1LG01g23550.1:exon:007Cp4.1LG01g23550.1:exon:007exon
Cp4.1LG01g23550.1:exon:006Cp4.1LG01g23550.1:exon:006exon
Cp4.1LG01g23550.1:exon:005Cp4.1LG01g23550.1:exon:005exon
Cp4.1LG01g23550.1:exon:004Cp4.1LG01g23550.1:exon:004exon
Cp4.1LG01g23550.1:exon:003Cp4.1LG01g23550.1:exon:003exon
Cp4.1LG01g23550.1:exon:002Cp4.1LG01g23550.1:exon:002exon
Cp4.1LG01g23550.1:exon:001Cp4.1LG01g23550.1:exon:001exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG01g23550.1:cds:009Cp4.1LG01g23550.1:cds:009CDS
Cp4.1LG01g23550.1:cds:008Cp4.1LG01g23550.1:cds:008CDS
Cp4.1LG01g23550.1:cds:007Cp4.1LG01g23550.1:cds:007CDS
Cp4.1LG01g23550.1:cds:006Cp4.1LG01g23550.1:cds:006CDS
Cp4.1LG01g23550.1:cds:005Cp4.1LG01g23550.1:cds:005CDS
Cp4.1LG01g23550.1:cds:004Cp4.1LG01g23550.1:cds:004CDS
Cp4.1LG01g23550.1:cds:003Cp4.1LG01g23550.1:cds:003CDS
Cp4.1LG01g23550.1:cds:002Cp4.1LG01g23550.1:cds:002CDS
Cp4.1LG01g23550.1:cds:001Cp4.1LG01g23550.1:cds:001CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG01g23550.1:five_prime_utr:002Cp4.1LG01g23550.1:five_prime_utr:002five_prime_UTR
Cp4.1LG01g23550.1:five_prime_utr:001Cp4.1LG01g23550.1:five_prime_utr:001five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG01g23550.1Cp4.1LG01g23550.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
biological_process GO:0032259 methylation
cellular_component GO:0005730 nucleolus
molecular_function GO:0008168 methyltransferase activity