Cp4.1LG01g20180.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g20180.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	non-specific lipid-transfer protein-like protein At5g64080
Location	Cp4.1LG01: 17144303 .. 17144698 (-)
Sequence length	396
RNA-Seq Expression	Cp4.1LG01g20180.1
Synteny	Cp4.1LG01g20180.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGCAATGGCGATGATTCAGAGTTTGGCTCTGTTCTTGACCTGCATTGCAGCGATATGGATTTGCAATGAAAATATAATTGCGAGTGCTGCCTCGCCGTTGTCGCCTCGGCCGAGTGCGGTGGATTGCCCGGCGGTGGTGTATGCGATACTGCCGTGCGTGAATTACATCACGATCGGGAGCACGATGACGATGCCCTCGGAAGTTTGCTGCAAGAATGTGGAAAGTGTGATGAAATGGAATGCTAAATGTATGTGCGTTGGGTTGAAGCAGAGCGAGAGCTTGGGGATTCAATTGAATGTTACTAGAGCGATTGATCTTCCTGCGACTTGTGGAATTTCGACTCCGCTTTCTGATTGCGGCTGTGCGTTTGATTTTATTCTTGTTTGA

mRNA sequence

ATGGCAATGGCAATGGCGATGATTCAGAGTTTGGCTCTGTTCTTGACCTGCATTGCAGCGATATGGATTTGCAATGAAAATATAATTGCGAGTGCTGCCTCGCCGTTGTCGCCTCGGCCGAGTGCGGTGGATTGCCCGGCGGTGGTGTATGCGATACTGCCGTGCGTGAATTACATCACGATCGGGAGCACGATGACGATGCCCTCGGAAGTTTGCTGCAAGAATGTGGAAAGTGTGATGAAATGGAATGCTAAATGTATGTGCGTTGGGTTGAAGCAGAGCGAGAGCTTGGGGATTCAATTGAATGTTACTAGAGCGATTGATCTTCCTGCGACTTGTGGAATTTCGACTCCGCTTTCTGATTGCGGCTGTGCGTTTGATTTTATTCTTGTTTGA

Coding sequence (CDS)

ATGGCAATGGCAATGGCGATGATTCAGAGTTTGGCTCTGTTCTTGACCTGCATTGCAGCGATATGGATTTGCAATGAAAATATAATTGCGAGTGCTGCCTCGCCGTTGTCGCCTCGGCCGAGTGCGGTGGATTGCCCGGCGGTGGTGTATGCGATACTGCCGTGCGTGAATTACATCACGATCGGGAGCACGATGACGATGCCCTCGGAAGTTTGCTGCAAGAATGTGGAAAGTGTGATGAAATGGAATGCTAAATGTATGTGCGTTGGGTTGAAGCAGAGCGAGAGCTTGGGGATTCAATTGAATGTTACTAGAGCGATTGATCTTCCTGCGACTTGTGGAATTTCGACTCCGCTTTCTGATTGCGGCTGTGCGTTTGATTTTATTCTTGTTTGA

Protein sequence

MAMAMAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYITIGSTMTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPLSDCGCAFDFILV

Homology

[Close]

BLAST of Cp4.1LG01g20180.1 vs. ExPASy Swiss-Prot
Match: Q2PE70 (Non-specific lipid transfer protein GPI-anchored 4 OS=Arabidopsis thaliana OX=3702 GN=LTPG4 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-15
Identity = 37/95 (38.95%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 32  AASPL---SPRPSAVDCPAVVYAILPCVNYITIGSTMTMPSEVCCKNVESVMKWNAKCMC 91
           A SP+   +P PS+ DC  V+Y+++ C+ Y+ +GS  T P + CC  +E+V+++N +C+C
Sbjct: 32  AKSPVGAPAPGPSSSDCSTVIYSMMDCLGYLGVGSNETKPEKSCCTGIETVLQYNPQCIC 91

Query: 92  VGLKQSESLGIQLNVTRAIDLPATCGISTPLSDCG 124
            GL  +  +GI+LN TRA+  P  C +S     CG
Sbjct: 92  AGLVSAGEMGIELNSTRALATPKACKLSIAPPHCG 126

[Close]

BLAST of Cp4.1LG01g20180.1 vs. ExPASy Swiss-Prot
Match: Q8VYI9 (Non-specific lipid transfer protein GPI-anchored 31 OS=Arabidopsis thaliana OX=3702 GN=LTPG31 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-12
Identity = 34/95 (35.79%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 30  ASAASPLSPRPSAVDCPAVVYAILPCVNYITIGSTMTMPSEVCCKNVESVMKWNAKCMCV 89
           AS     +P PS VDC  ++  +  C+++++ G T+  P   CC  +++V+K +++C+C 
Sbjct: 29  ASHHHATAPAPS-VDCSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCE 88

Query: 90  GLKQSESLGIQLNVTRAIDLPATCGISTP-LSDCG 124
             K S SLG+ LN+T+A  LPA C +  P ++ CG
Sbjct: 89  AFKSSASLGVTLNITKASTLPAACKLHAPSIATCG 122

[Close]

BLAST of Cp4.1LG01g20180.1 vs. ExPASy Swiss-Prot
Match: Q2PE60 (Non-specific lipid transfer protein GPI-anchored 23 OS=Arabidopsis thaliana OX=3702 GN=LTPG23 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.3e-12
Identity = 28/80 (35.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 37  SPRPS-AVDCPAVVYAILPCVNYITIGSTMTMPSEVCCKNVESVMKWNAKCMCVGLKQSE 96
           +P+PS + DC +V+Y+++ C++++T+GST   P++ CC  V++V+ ++ KC+C  L+ S 
Sbjct: 36  TPQPSNSTDCSSVIYSMVDCLSFLTVGSTDPSPTKTCCVGVKTVLNYSPKCLCSALESSR 95

Query: 97  SLGIQLNVTRAIDLPATCGI 116
            +G  L+ T+A+ +P  C +
Sbjct: 96  EMGFVLDDTKALAMPKICNV 115

[Close]

BLAST of Cp4.1LG01g20180.1 vs. ExPASy Swiss-Prot
Match: Q9ZQI8 (Non-specific lipid transfer protein GPI-anchored 11 OS=Arabidopsis thaliana OX=3702 GN=LTPG11 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-11
Identity = 29/84 (34.52%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 41  SAVDCPAVVYAILPCVNYITIGSTMTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQ 100
           +AVDC +++  +  C++++T GST+  P   CC  +++V++   +C+C   K S SLG+ 
Sbjct: 23  AAVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLT 82

Query: 101 LNVTRAIDLPATCGISTPLS-DCG 124
           L++++A  LP+ C ++ P S  CG
Sbjct: 83  LDLSKAASLPSVCKVAAPPSARCG 106

[Close]

BLAST of Cp4.1LG01g20180.1 vs. ExPASy Swiss-Prot
Match: Q2PE59 (Non-specific lipid transfer protein GPI-anchored 26 OS=Arabidopsis thaliana OX=3702 GN=LTPG26 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.1e-07
Identity = 26/75 (34.67%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 45  CPAVVYAILPCVNYITIGSTMTMPSEVCCKNVESVMKWNAKCMCVGLKQSES-LGIQLNV 104
           C  V+ ++ PC+++IT     ++PS+ CC  +  V++++++C+C  L    S LGI +N 
Sbjct: 26  CTNVLISMAPCLSFIT--QNTSLPSQQCCNQLAHVVRYSSECLCQVLDGGGSQLGINVNE 85

Query: 105 TRAIDLPATCGISTP 119
           T+A+ LP  C + TP
Sbjct: 86  TQALALPKACHVETP 98

[Close]

BLAST of Cp4.1LG01g20180.1 vs. NCBI nr
Match: XP_023553719.1 (non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257 bits (657), Expect = 2.64e-86
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MAMAMAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYIT 60
           MAMAMAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYIT
Sbjct: 1   MAMAMAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYIT 60

Query: 61  IGSTMTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPLS 120
           IGSTMTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPLS
Sbjct: 61  IGSTMTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPLS 120

Query: 121 DCGCAFDFILV 131
           DCGCAFDFILV
Sbjct: 121 DCGCAFDFILV 131

[Close]

BLAST of Cp4.1LG01g20180.1 vs. NCBI nr
Match: KAG6602055.1 (Non-specific lipid-transfer protein-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 250 bits (638), Expect = 1.96e-83
Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 3   MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYITIG 62
           MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYITIG
Sbjct: 1   MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYITIG 60

Query: 63  STMTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPLSDC 122
           STM MPS+VCCKNVESV+KWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPLSDC
Sbjct: 61  STMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPLSDC 120

Query: 123 GCAFDFILV 131
           GCAFDFILV
Sbjct: 121 GCAFDFILV 129

[Close]

BLAST of Cp4.1LG01g20180.1 vs. NCBI nr
Match: XP_022959525.1 (non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita moschata])

HSP 1 Score: 242 bits (617), Expect = 3.12e-80
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 5   MAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYITIGST 64
           MAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNY+TIGST
Sbjct: 1   MAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYVTIGST 60

Query: 65  MTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTP--LSDC 124
           M MPS+VCCKNVESV+KWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTP  LSDC
Sbjct: 61  MAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPTPLSDC 120

Query: 125 GCAFDFILV 131
           GCAFDFILV
Sbjct: 121 GCAFDFILV 129

[Close]

BLAST of Cp4.1LG01g20180.1 vs. NCBI nr
Match: KAG7032748.1 (Non-specific lipid-transfer protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242 bits (617), Expect = 3.23e-80
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 3   MAMAMIQSLALFLTCIAAIWICNENIIASAASPLS-PRPSAVDCPAVVYAILPCVNYITI 62
           MAMAMIQSLALFLTCIAAIWICNENIIASAASPLS PRPSAVDCPAVVYAILPCVNYITI
Sbjct: 1   MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITI 60

Query: 63  GSTMTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPLSD 122
           GSTM MPS+VCCKNVESV+KWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGIST LSD
Sbjct: 61  GSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTRLSD 120

Query: 123 CGCAFDFILV 131
           CGCAFDFILV
Sbjct: 121 CGCAFDFILV 130

[Close]

BLAST of Cp4.1LG01g20180.1 vs. NCBI nr
Match: XP_022939816.1 (non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita moschata] >KAG7016532.1 Non-specific lipid-transfer protein-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120 bits (301), Expect = 6.00e-31
Identity = 70/120 (58.33%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 3   MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYITIG 62
           MAM++I SLALF  CIAA+       +A A SP SP PSA DC AVVY ++PCV Y TIG
Sbjct: 1   MAMSIIPSLALFTICIAAV------AVAGATSP-SPAPSATDCSAVVYQMMPCVEYFTIG 60

Query: 63  STMTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPLSDC 122
           ST +  S  CCK V+ VMK  A CMC  LKQ+  +GIQLN TRA+ LPATCG  T L+DC
Sbjct: 61  STKSNASTDCCKVVKDVMKSKADCMCDALKQNGRMGIQLNRTRALGLPATCGSPTSLADC 113

[Close]

BLAST of Cp4.1LG01g20180.1 vs. ExPASy TrEMBL
Match: A0A6J1H6I6 (non-specific lipid-transfer protein-like protein At5g64080 OS=Cucurbita moschata OX=3662 GN=LOC111460552 PE=3 SV=1)

HSP 1 Score: 242 bits (617), Expect = 1.51e-80
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 5   MAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYITIGST 64
           MAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNY+TIGST
Sbjct: 1   MAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYVTIGST 60

Query: 65  MTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTP--LSDC 124
           M MPS+VCCKNVESV+KWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTP  LSDC
Sbjct: 61  MAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPTPLSDC 120

Query: 125 GCAFDFILV 131
           GCAFDFILV
Sbjct: 121 GCAFDFILV 129

[Close]

BLAST of Cp4.1LG01g20180.1 vs. ExPASy TrEMBL
Match: A0A6J1FGX0 (non-specific lipid-transfer protein-like protein At5g64080 OS=Cucurbita moschata OX=3662 GN=LOC111445576 PE=4 SV=1)

HSP 1 Score: 120 bits (301), Expect = 2.91e-31
Identity = 70/120 (58.33%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 3   MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYITIG 62
           MAM++I SLALF  CIAA+       +A A SP SP PSA DC AVVY ++PCV Y TIG
Sbjct: 1   MAMSIIPSLALFTICIAAV------AVAGATSP-SPAPSATDCSAVVYQMMPCVEYFTIG 60

Query: 63  STMTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPLSDC 122
           ST +  S  CCK V+ VMK  A CMC  LKQ+  +GIQLN TRA+ LPATCG  T L+DC
Sbjct: 61  STKSNASTDCCKVVKDVMKSKADCMCDALKQNGRMGIQLNRTRALGLPATCGSPTSLADC 113

[Close]

BLAST of Cp4.1LG01g20180.1 vs. ExPASy TrEMBL
Match: A0A6J1K2B1 (non-specific lipid-transfer protein-like protein At5g64080 OS=Cucurbita maxima OX=3661 GN=LOC111489469 PE=4 SV=1)

HSP 1 Score: 117 bits (292), Expect = 6.51e-30
Identity = 68/120 (56.67%), Postives = 80/120 (66.67%), Query Frame = 0


Query: 3   MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYITIG 62
           MAM++I SLALF  CIAA+       +A A SP SP PSA+DC AVVY ++PCV Y TIG
Sbjct: 1   MAMSIIPSLALFTICIAAV------AVAGATSP-SPAPSALDCSAVVYQMMPCVEYFTIG 60

Query: 63  STMTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPLSDC 122
           ST    S  CCK V+ VMK    CMC  LKQ+  +GIQLN TRA+ LPA CG  T L+DC
Sbjct: 61  STKANASTDCCKVVKDVMKSKGDCMCDALKQNGRMGIQLNRTRALGLPAACGSPTSLADC 113

[Close]

BLAST of Cp4.1LG01g20180.1 vs. ExPASy TrEMBL
Match: A0A5D3DSV8 (SH3 domain-containing protein C23A1.17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001470 PE=4 SV=1)

HSP 1 Score: 111 bits (277), Expect = 2.71e-27
Identity = 63/123 (51.22%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 3   MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYITIG 62
           M M MI +L+LFLTCI AI   N        SP SP P A DC  +V+ ILPCV+Y+TIG
Sbjct: 1   MTMGMISNLSLFLTCIVAIASANPP------SP-SPGPGAGDCSVLVFHILPCVDYLTIG 60

Query: 63  STMTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPLSDC 122
           ST    S+VCC+ +++ M+ +A+CMC  LKQS+ +GI LN+TR I LPA CGI   L +C
Sbjct: 61  STKANASQVCCEVLKNTMEPSAECMCDQLKQSDKMGIHLNITRVIGLPAACGIPISLPEC 116

Query: 123 GCA 125
             A
Sbjct: 121 DIA 116

[Close]

BLAST of Cp4.1LG01g20180.1 vs. ExPASy TrEMBL
Match: A0A1S3CC53 (SH3 domain-containing protein C23A1.17-like OS=Cucumis melo OX=3656 GN=LOC103499284 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 4.60e-27
Identity = 62/123 (50.41%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 3   MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSPRPSAVDCPAVVYAILPCVNYITIG 62
           M M MI +L+LFLTCI AI   N        SP SP P A DC  +V+ ILPCV+Y+TIG
Sbjct: 1   MTMGMISNLSLFLTCIVAIASANPP------SP-SPGPGAGDCSVLVFHILPCVDYLTIG 60

Query: 63  STMTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPLSDC 122
           ST    S+VCC+ +++ M+ +A+CMC  LKQS+ +GI LN+TR + LPA CGI   L +C
Sbjct: 61  STKANASQVCCEVLKNTMEPSAECMCDQLKQSDKMGIHLNITRVVGLPAACGIPISLPEC 116

Query: 123 GCA 125
             A
Sbjct: 121 DIA 116

[Close]

BLAST of Cp4.1LG01g20180.1 vs. TAIR 10
Match: AT4G08670.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 7.7e-17
Identity = 37/95 (38.95%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 32  AASPL---SPRPSAVDCPAVVYAILPCVNYITIGSTMTMPSEVCCKNVESVMKWNAKCMC 91
           A SP+   +P PS+ DC  V+Y+++ C+ Y+ +GS  T P + CC  +E+V+++N +C+C
Sbjct: 32  AKSPVGAPAPGPSSSDCSTVIYSMMDCLGYLGVGSNETKPEKSCCTGIETVLQYNPQCIC 91

Query: 92  VGLKQSESLGIQLNVTRAIDLPATCGISTPLSDCG 124
            GL  +  +GI+LN TRA+  P  C +S     CG
Sbjct: 92  AGLVSAGEMGIELNSTRALATPKACKLSIAPPHCG 126

[Close]

BLAST of Cp4.1LG01g20180.1 vs. TAIR 10
Match: AT5G64080.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13
Identity = 34/95 (35.79%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 30  ASAASPLSPRPSAVDCPAVVYAILPCVNYITIGSTMTMPSEVCCKNVESVMKWNAKCMCV 89
           AS     +P PS VDC  ++  +  C+++++ G T+  P   CC  +++V+K +++C+C 
Sbjct: 29  ASHHHATAPAPS-VDCSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCE 88

Query: 90  GLKQSESLGIQLNVTRAIDLPATCGISTP-LSDCG 124
             K S SLG+ LN+T+A  LPA C +  P ++ CG
Sbjct: 89  AFKSSASLGVTLNITKASTLPAACKLHAPSIATCG 122

[Close]

BLAST of Cp4.1LG01g20180.1 vs. TAIR 10
Match: AT5G64080.2 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13
Identity = 34/95 (35.79%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 30  ASAASPLSPRPSAVDCPAVVYAILPCVNYITIGSTMTMPSEVCCKNVESVMKWNAKCMCV 89
           AS     +P PS VDC  ++  +  C+++++ G T+  P   CC  +++V+K +++C+C 
Sbjct: 29  ASHHHATAPAPS-VDCSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCE 88

Query: 90  GLKQSESLGIQLNVTRAIDLPATCGISTP-LSDCG 124
             K S SLG+ LN+T+A  LPA C +  P ++ CG
Sbjct: 89  AFKSSASLGVTLNITKASTLPAACKLHAPSIATCG 122

[Close]

BLAST of Cp4.1LG01g20180.1 vs. TAIR 10
Match: AT1G36150.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-13
Identity = 28/80 (35.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 37  SPRPS-AVDCPAVVYAILPCVNYITIGSTMTMPSEVCCKNVESVMKWNAKCMCVGLKQSE 96
           +P+PS + DC +V+Y+++ C++++T+GST   P++ CC  V++V+ ++ KC+C  L+ S 
Sbjct: 36  TPQPSNSTDCSSVIYSMVDCLSFLTVGSTDPSPTKTCCVGVKTVLNYSPKCLCSALESSR 95

Query: 97  SLGIQLNVTRAIDLPATCGI 116
            +G  L+ T+A+ +P  C +
Sbjct: 96  EMGFVLDDTKALAMPKICNV 115

[Close]

BLAST of Cp4.1LG01g20180.1 vs. TAIR 10
Match: AT2G13820.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-12
Identity = 29/84 (34.52%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 41  SAVDCPAVVYAILPCVNYITIGSTMTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQ 100
           +AVDC +++  +  C++++T GST+  P   CC  +++V++   +C+C   K S SLG+ 
Sbjct: 23  AAVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLT 82

Query: 101 LNVTRAIDLPATCGISTPLS-DCG 124
           L++++A  LP+ C ++ P S  CG
Sbjct: 83  LDLSKAASLPSVCKVAAPPSARCG 106

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g20180.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2PE70	1.1e-15	38.95	Non-specific lipid transfer protein GPI-anchored 4 OS=Arabidopsis thaliana OX=37...	[more]
Q8VYI9	1.9e-12	35.79	Non-specific lipid transfer protein GPI-anchored 31 OS=Arabidopsis thaliana OX=3...	[more]
Q2PE60	4.3e-12	35.00	Non-specific lipid transfer protein GPI-anchored 23 OS=Arabidopsis thaliana OX=3...	[more]
Q9ZQI8	4.7e-11	34.52	Non-specific lipid transfer protein GPI-anchored 11 OS=Arabidopsis thaliana OX=3...	[more]
Q2PE59	7.1e-07	34.67	Non-specific lipid transfer protein GPI-anchored 26 OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Cp4.1LG01g20180.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553719.1	2.64e-86	100.00	non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita pepo subsp...	[more]
KAG6602055.1	1.96e-83	97.67	Non-specific lipid-transfer protein-like protein, partial [Cucurbita argyrosperm...	[more]
XP_022959525.1	3.12e-80	95.35	non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita moschata]	[more]
KAG7032748.1	3.23e-80	96.15	Non-specific lipid-transfer protein-like protein, partial [Cucurbita argyrosperm...	[more]
XP_022939816.1	6.00e-31	58.33	non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita moschata] ...	[more]

BLAST of Cp4.1LG01g20180.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6I6	1.51e-80	95.35	non-specific lipid-transfer protein-like protein At5g64080 OS=Cucurbita moschata...	[more]
A0A6J1FGX0	2.91e-31	58.33	non-specific lipid-transfer protein-like protein At5g64080 OS=Cucurbita moschata...	[more]
A0A6J1K2B1	6.51e-30	56.67	non-specific lipid-transfer protein-like protein At5g64080 OS=Cucurbita maxima O...	[more]
A0A5D3DSV8	2.71e-27	51.22	SH3 domain-containing protein C23A1.17-like OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CC53	4.60e-27	50.41	SH3 domain-containing protein C23A1.17-like OS=Cucumis melo OX=3656 GN=LOC103499...	[more]

BLAST of Cp4.1LG01g20180.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G08670.1	7.7e-17	38.95	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G64080.1	1.4e-13	35.79	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G64080.2	1.4e-13	35.79	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G36150.1	3.0e-13	35.00	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT2G13820.1	3.4e-12	34.52	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 100..117 score: 34.96 coord: 67..81 score: 27.18 coord: 44..60 score: 33.76
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 30..122 e-value: 3.8E-13 score: 49.4
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 43..122 e-value: 2.7E-12 score: 48.4
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 42..120
IPR043325	Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein	PANTHER	PTHR33044	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED	coord: 20..123
None	No IPR available	PANTHER	PTHR33044:SF189	LIPID TRANSFER PROTEIN	coord: 20..123
None	No IPR available	CDD	cd00010	AAI_LTSS	coord: 52..115 e-value: 5.23096E-9 score: 47.4215

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g20180	Cp4.1LG01g20180	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g20180.1:exon:001	Cp4.1LG01g20180.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g20180.1:cds:001	Cp4.1LG01g20180.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g20180.1	Cp4.1LG01g20180.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0008289	lipid binding