Cp4.1LG01g13860.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g13860.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Elongator complex protein 2
Location	Cp4.1LG01: 7991857 .. 7994150 (-)
Sequence length	755
RNA-Seq Expression	Cp4.1LG01g13860.1
Synteny	Cp4.1LG01g13860.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTGGCGGCGGCGACGAGGTGGAAGTCAATGGAGCGTTCATAGGAGCAGGGTGTAACATAATAGTGAACAACGTTCCTTGGGGAGCCTGTGATTTAGTGGCTTTCGGCGCTCAAAATGCCGACGCTATCGCTATCGCTATCTTCTCCCCTAAGGTGCGTTAAGTACTACGATGCACTTCCTCTTTCGATTTTACATAACCGGAGAAATGCCGAACTCCGCTTCCTTTTTGTTCTCCTCAATTTCGAATTTCACAGTCTGCACAAATTTTGACGACCTTTTCCGGTCACAAATTTCATGGGCTAGATCCGGCGATTATATTATTTCAGTCGGGCATGACCAGGTGAGGTGCAACCAATTTGGCTATCTGCCTTGTCATCATAACTCATTGTGTGGATTGAACCTGAATATGAAAATTTTGCTAGTATGCCTCGTTTTATCTCGTTGTGTCATATGAAAGTGTATTTTATGAACCCTAGTTTTTCTCATCACTCCAGCTAAGAAAAAATTGTGAGATTTTCTGGCTCTCACAATTAGAAAGTTGGTAGAGACTTTGAAGCTCCATTATCGTTTTTGAAGTCACTGAGTCATGCCACACTGCACAAATTTGTGGCCACGGATGATGATCTTGTGTTCATATTTTAGGTGCTAGTCGCCTCTTGGGCTTTCGCAGAAACCTATTGCTGTTCACTGTGAGTCTTTCTTCAATCTTCCCCCATTGACTGGCCGTTTCTCAGTCTCTCAGTTTCAGTTTGGCTGATCACGGACGAGTTACTGATCATCACCTTCGGAAGTTATTGCCTCACCAACTAGCTAACCAGACACAAGCCCCTCTTCGGGCAGATTCCTCCTCTTGCTCTTCAGCGTACAGGGTATTAGCAACCATTTCTAGCTGTTGTTCCCCTCTCAAGGGCAGGTTCTTATGCGTTACTCACCCGTCTGCCATTTGATTAAGTTAAATCCATATTTTTTAATTCTATGAACCCTTATTTCTTTTTTCGAAACCATTATTACTATTATAGAATATATCCGACCTAATACATAATTAAATTGGTTTGCGAGATCCTCTCAAATAATCATTCGGAATATGGAACCATGGTGAAACTTCTAACTCAACTTGAGGCAGTTATATCTTGGATAATGGCTGTCGAGTCTTTGCTATCTTTTTTGTGTTATATTATCATAAAAGGTTAAGGATGTGGAAACTGATTATAGGAGATTCACTTTGCAATGGAAGTCAAGTTTCTTTGCTTGAGTATCAATTTGTTGGTACAAGAATATGTATATTGAAATGTTCCAAGTTCTAACCAGTCATCTTTATGCAGCTGGTGATAAGACTTAAGACAGGAGTGGAAATGAAGGTCTTGACACCCTTGAAACCATTCCCAATGCAGTTCCTGACGTTCTTATTGAACCTCCCATTGAACATCAACTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGATGATCATGGGAATGAGCTATTTTCTCTATGTTGTGATCTCATGGGGAAGCTTGTTACTTCATCCTGTAAGGTATAATCAGTTCATCTATTGTTCATAATTATAGAAAATAATTATTCATTTCTATTTAATATTAGTCAACCCAAAAGACAATGTCTTTTGTTTCTTACCCTGCTTGAACAAAAAAACAATAGTTTTATAGATCAAGGGAGGGGCACAAAAGAATCACTTGATCATGTTCTTGGAACCCATATGGTCATGAGTTTGCAACAGGCTCTAGGGATAAGACTGCGAAGATATGGGCTTTGAAAGTCGAATCTTCAGTTAAACAAGCAGCTAACAACTCTGCCACAGTTCAAATCTAGTTTCACTGCTTTATAAACGGGTGGCTCTTGATCCCGAGAGCAATGGGCTCCCTTGAGTTTTGGAGTTTGTCTATCAAAAGAACAGATGATGTTTGCTCAAATGTAGTGTCTTAATCAATTTGTGTGCCATGTTTCCTCAGTCAAGTGTTTGGCATGAAAGCAAACGGAGAAGAGTGAAAAGTGCAGGAAGCTGCAACTTGAATCCTGTGGCACGAACCACTGTGTGAAGTGTGTTTGAGGTAAATGTTCCTGTTATGAAAAGGTATGTATCATTGTATTGCTTGTTCTTGTAGATTATGATCACTTTCAATTTTGCCCCCACAGAAAGTGGCACTTAACTGAAATTGTTTCCTCTTGTATTTGGGCTGCTGATCTGTCTATTCATTTCCATTTCCATTTCTGAAAAACTTTGGAGTAAATAACGAATTATACCGTCCAGTCTCTTCCCTTT

mRNA sequence

ATGGCTTCTGGCGGCGGCGACGAGGTGGAAGTCAATGGAGCGTTCATAGGAGCAGGGTGTAACATAATAGTGAACAACGTTCCTTGGGGAGCCTGTGATTTAGTGGCTTTCGGCGCTCAAAATGCCGACGCTATCGCTATCGCTATCTTCTCCCCTAAGTCTGCACAAATTTTGACGACCTTTTCCGGTCACAAATTTCATGGGCTAGATCCGGCGATTATATTATTTCAGTCGGGCATGACCAGGAGTGGAAATGAAGGTCTTGACACCCTTGAAACCATTCCCAATGCAGTTCCTGACGTTCTTATTGAACCTCCCATTGAACATCAACTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGATGATCATGGGAATGAGCTATTTTCTCTATGTTGTGATCTCATGGGGAAGCTTGTTACTTCATCCTGTAAGTCAAGTGTTTGGCATGAAAGCAAACGGAGAAGAGTGAAAAGTGCAGGAAGCTGCAACTTGAATCCTGTGGCACGAACCACTGTGTGAAGTGTGTTTGAGGTAAATGTTCCTGTTATGAAAAGGTATGTATCATTGTATTGCTTGTTCTTGTAGATTATGATCACTTTCAATTTTGCCCCCACAGAAAGTGGCACTTAACTGAAATTGTTTCCTCTTGTATTTGGGCTGCTGATCTGTCTATTCATTTCCATTTCCATTTCTGAAAAACTTTGGAGTAAATAACGAATTATACCGTCCAGTCTCTTCCCTTT

Coding sequence (CDS)

ATGGCTTCTGGCGGCGGCGACGAGGTGGAAGTCAATGGAGCGTTCATAGGAGCAGGGTGTAACATAATAGTGAACAACGTTCCTTGGGGAGCCTGTGATTTAGTGGCTTTCGGCGCTCAAAATGCCGACGCTATCGCTATCGCTATCTTCTCCCCTAAGTCTGCACAAATTTTGACGACCTTTTCCGGTCACAAATTTCATGGGCTAGATCCGGCGATTATATTATTTCAGTCGGGCATGACCAGGAGTGGAAATGAAGGTCTTGACACCCTTGAAACCATTCCCAATGCAGTTCCTGACGTTCTTATTGAACCTCCCATTGAACATCAACTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGATGATCATGGGAATGAGCTATTTTCTCTATGTTGTGATCTCATGGGGAAGCTTGTTACTTCATCCTGTAAGTCAAGTGTTTGGCATGAAAGCAAACGGAGAAGAGTGAAAAGTGCAGGAAGCTGCAACTTGAATCCTGTGGCACGAACCACTGTGTGA

Protein sequence

MASGGGDEVEVNGAFIGAGCNIIVNNVPWGACDLVAFGAQNADAIAIAIFSPKSAQILTTFSGHKFHGLDPAIILFQSGMTRSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGKLVTSSCKSSVWHESKRRRVKSAGSCNLNPVARTTV

Homology

[Close]

BLAST of Cp4.1LG01g13860.1 vs. ExPASy Swiss-Prot
Match: F4I1S7 (Elongator complex protein 2 OS=Arabidopsis thaliana OX=3702 GN=ELP2 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.6e-20
Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 84  GNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGKLV 143
           G EGLDT ET+P A P  L EPPIE QLA+HTLWPESHKLY  HGNELFSLC D  G LV
Sbjct: 555 GGEGLDTFETVPEAAPAELKEPPIEDQLAFHTLWPESHKLY-GHGNELFSLCSDHKGNLV 614

Query: 144 TSSCKS 150
            SSCK+
Sbjct: 615 ASSCKA 619

HSP 2 Score: 75.9 bits (185), Expect = 5.2e-13
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 8  EVEVNGAFIGAGCNIIVNNVPWGACDLVAFGAQNADAIAIAIFSPKSAQILTTFSGHK 66
          +VE    FIGAGCN +VNNV WGA  LV+FGAQN    A+A+F PK+AQILTT  GHK
Sbjct: 6  KVEAKRVFIGAGCNRVVNNVSWGASGLVSFGAQN----AVAVFCPKTAQILTTLPGHK 59

[Close]

BLAST of Cp4.1LG01g13860.1 vs. ExPASy Swiss-Prot
Match: Q86H45 (Probable elongator complex protein 2 OS=Dictyostelium discoideum OX=44689 GN=elp2 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.6e-08
Identity = 30/69 (43.48%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 84  GNEGLDT--LETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGK 143
           G EG+DT   E      P+VL EPP E  L   +LWPE HK Y  HGNE+ ++ C   G 
Sbjct: 610 GGEGMDTGYFEDEIPFNPEVLSEPPFEEHLLQSSLWPEIHKFY-GHGNEIVAVACSADGM 669

Query: 144 LVTSSCKSS 151
            + S+C++S
Sbjct: 670 YLASTCRAS 677

[Close]

BLAST of Cp4.1LG01g13860.1 vs. ExPASy Swiss-Prot
Match: Q5EBD9 (Elongator complex protein 2 OS=Xenopus tropicalis OX=8364 GN=elp2 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-07
Identity = 37/111 (33.33%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 66  FHGLDPAIILFQSGMTRSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYD 125
           FHG     IL QS         +    + PN  P  L EPP E  L  +TLWPE  KLY 
Sbjct: 507 FHG----EILIQSTQEEGKYNSVSEQYSQPNFQPLNLTEPPTEDHLLQNTLWPEVQKLY- 566

Query: 126 DHGNELFSLCCDLMGKLVTSSCKSS--------VWHESKRRRVKSAGSCNL 169
            HG E+F++ C+    ++ S+CK+S        +W  +  ++++S    NL
Sbjct: 567 GHGYEIFAVACNSAKTVIASACKASKREHAAIILWSTTSWKQLQSLSYHNL 612

[Close]

BLAST of Cp4.1LG01g13860.1 vs. ExPASy Swiss-Prot
Match: Q7K4B3 (Probable elongator complex protein 2 OS=Drosophila melanogaster OX=7227 GN=Elp2 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.7e-06
Identity = 41/139 (29.50%), Postives = 64/139 (46.04%), Query Frame = 0


Query: 38  GAQNADAIAIAIFS-PKSAQILTTFSGHKFHGLDPAIILFQSGMTRSGNEGLDTLETIPN 97
           G +N DA  + + S PK A +             P++ L    + +  +E   T +T  +
Sbjct: 476 GIENDDAGDVLLDSLPKGASV-------------PSLGLSNKAVYKVDSEVESTSKTSKD 535

Query: 98  AVPD------VLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGKLVTSSCKSS 157
             PD       L  PP E  L  +TLWPE  KLY  HG E+F+L     G L+ S+CK+S
Sbjct: 536 EYPDNYFVPIALETPPQEETLMQNTLWPELQKLY-GHGYEIFALAATADGSLLASTCKAS 595

Query: 158 --------VWHESKRRRVK 162
                   +W+ S  ++++
Sbjct: 596 NAEHAQIILWNPSNWKQIQ 600

[Close]

BLAST of Cp4.1LG01g13860.1 vs. ExPASy Swiss-Prot
Match: Q6IA86 (Elongator complex protein 2 OS=Homo sapiens OX=9606 GN=ELP2 PE=1 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 4.7e-06
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 99  PDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGKLVTSSCKSS 151
           P +L EPP E  L  +TLWPE  KLY  HG E+F + C+    L+ S+CK++
Sbjct: 539 PSILTEPPTEDHLLQNTLWPEVQKLY-GHGYEIFCVTCNSSKTLLASACKAA 589

[Close]

BLAST of Cp4.1LG01g13860.1 vs. NCBI nr
Match: XP_023525984.1 (elongator complex protein 2-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170 bits (431), Expect = 9.21e-52
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MASGGGDEVEVNGAFIGAGCNIIVNNVPWGACDLVAFGAQNADAIAIAIFSPKSAQILTT 60
          MASGGGDEVEVNGAFIGAGCNIIVNNVPWGACDLVAFGAQNADAIAIAIFSPKSAQILTT
Sbjct: 1  MASGGGDEVEVNGAFIGAGCNIIVNNVPWGACDLVAFGAQNADAIAIAIFSPKSAQILTT 60

Query: 61 FSGHKFHGLDPAIILFQSGMTR 82
          FSGHKFHGLDPAIILFQSGMTR
Sbjct: 61 FSGHKFHGLDPAIILFQSGMTR 82

[Close]

BLAST of Cp4.1LG01g13860.1 vs. NCBI nr
Match: XP_023525985.1 (elongator complex protein 2-like isoform X5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168 bits (425), Expect = 7.53e-51
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MASGGGDEVEVNGAFIGAGCNIIVNNVPWGACDLVAFGAQNADAIAIAIFSPKSAQILTT 60
          MASGGGDEVEVNGAFIGAGCNIIVNNVPWGACDLVAFGAQNADAIAIAIFSPKSAQILTT
Sbjct: 1  MASGGGDEVEVNGAFIGAGCNIIVNNVPWGACDLVAFGAQNADAIAIAIFSPKSAQILTT 60

Query: 61 FSGHKFHGLDPAIILFQSGMT 81
          FSGHKFHGLDPAIILFQSGMT
Sbjct: 61 FSGHKFHGLDPAIILFQSGMT 81

[Close]

BLAST of Cp4.1LG01g13860.1 vs. NCBI nr
Match: KAF5450938.1 (hypothetical protein F2P56_031247 [Juglans regia])

HSP 1 Score: 120 bits (301), Expect = 1.06e-30
Identity = 57/67 (85.07%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 82  RSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGK 141
           RSGN+GLDTLETIP+AVP VL EPPIE QLAWHTLWPESHKLY  HGNELFSLCCD  GK
Sbjct: 117 RSGNDGLDTLETIPDAVPAVLTEPPIEDQLAWHTLWPESHKLYG-HGNELFSLCCDHEGK 176

Query: 142 LVTSSCK 148
           LV SSCK
Sbjct: 177 LVASSCK 182

[Close]

BLAST of Cp4.1LG01g13860.1 vs. NCBI nr
Match: KAG7013001.1 (Elongator complex protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122 bits (305), Expect = 4.76e-29
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 82  RSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGK 141
           RSGNEGLDTLETIP+AVP VL EPPIE QLAWHTLWPESHKLY  HGNELFSLCCD  GK
Sbjct: 166 RSGNEGLDTLETIPDAVPVVLTEPPIEDQLAWHTLWPESHKLYG-HGNELFSLCCDHKGK 225

Query: 142 LVTSSCKS 149
           LV SSCK+
Sbjct: 226 LVASSCKA 232

[Close]

BLAST of Cp4.1LG01g13860.1 vs. NCBI nr
Match: XP_023542024.1 (elongator complex protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122 bits (305), Expect = 2.02e-28
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 82  RSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGK 141
           RSGNEGLDTLETIP+AVP VL EPPIE QLAWHTLWPESHKLY  HGNELFSLCCD  GK
Sbjct: 551 RSGNEGLDTLETIPDAVPVVLTEPPIEDQLAWHTLWPESHKLYG-HGNELFSLCCDHKGK 610

Query: 142 LVTSSCKS 149
           LV SSCK+
Sbjct: 611 LVASSCKA 617

[Close]

BLAST of Cp4.1LG01g13860.1 vs. ExPASy TrEMBL
Match: A0A1J3DTP4 (Elongator complex protein 2 OS=Noccaea caerulescens OX=107243 GN=GA_TR19303_c1_g1_i1_g.63331 PE=4 SV=1)

HSP 1 Score: 130 bits (328), Expect = 3.54e-33
Identity = 85/219 (38.81%), Postives = 103/219 (47.03%), Query Frame = 0


Query: 8   EVEVNGAFIGAGCNIIVNNVPWGACDLVAFGAQNADAIAIAIFSPKSAQILTTFSGHK-- 67
           +VE    FIGAGCN +VNNV WGA  LV+FGAQNA    +AI +PK+AQILTT  GHK  
Sbjct: 6   KVEAKRVFIGAGCNRVVNNVSWGASGLVSFGAQNA----VAISAPKTAQILTTLPGHKAS 65

Query: 68  -------------FHGL----------DPAIILFQSGMT--------------------- 127
                        F G           +  + +F++ ++                     
Sbjct: 66  VNCTHWLPSSKFAFKGKGNHRFVSGAEEKVVRVFEAPLSFLKTLKHTCAGGEGSFPEDLQ 125

Query: 128 -------------------------------RSGNEGLDTLETIPNAVPDVLIEPPIEHQ 149
                                            G EGL+  ET+P A P  L EPPIE Q
Sbjct: 126 ADVQVLGANMSALGLSQKPIYLHSSSEPVERNGGGEGLERFETVPEAAPAELKEPPIEDQ 185

[Close]

BLAST of Cp4.1LG01g13860.1 vs. ExPASy TrEMBL
Match: A0A6J1HYF8 (elongator complex protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111467402 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 9.80e-29
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 82  RSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGK 141
           RSGNEGLDTLETIP+AVP VL EPPIE QLAWHTLWPESHKLY  HGNELFSLCCD  GK
Sbjct: 551 RSGNEGLDTLETIPDAVPVVLTEPPIEDQLAWHTLWPESHKLYG-HGNELFSLCCDHKGK 610

Query: 142 LVTSSCKS 149
           LV SSCK+
Sbjct: 611 LVASSCKA 617

[Close]

BLAST of Cp4.1LG01g13860.1 vs. ExPASy TrEMBL
Match: A0A6J1FZS0 (elongator complex protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111449377 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 9.80e-29
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 82  RSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGK 141
           RSGNEGLDTLETIP+AVP VL EPPIE QLAWHTLWPESHKLY  HGNELFSLCCD  GK
Sbjct: 551 RSGNEGLDTLETIPDAVPVVLTEPPIEDQLAWHTLWPESHKLYG-HGNELFSLCCDHKGK 610

Query: 142 LVTSSCKS 149
           LV SSCK+
Sbjct: 611 LVASSCKA 617

[Close]

BLAST of Cp4.1LG01g13860.1 vs. ExPASy TrEMBL
Match: A0A0A0KR67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G610440 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 2.48e-28
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 82  RSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGK 141
           RSGNEG+DTLETIP+AVP +L EPPIE QLAWHTLWPESHKLY  HGNELFSLCCD  GK
Sbjct: 553 RSGNEGIDTLETIPDAVPVILTEPPIEDQLAWHTLWPESHKLYG-HGNELFSLCCDNKGK 612

Query: 142 LVTSSCKS 149
           LV SSCK+
Sbjct: 613 LVASSCKA 619

[Close]

BLAST of Cp4.1LG01g13860.1 vs. ExPASy TrEMBL
Match: A0A6P9E751 (elongator complex protein 2-like OS=Juglans regia OX=51240 GN=LOC109013148 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 2.48e-28
Identity = 57/68 (83.82%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 82  RSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGK 141
           RSGN+GLDTLETIP+AVP VL EPPIE QLAWHTLWPESHKLY  HGNELFSLCCD  GK
Sbjct: 551 RSGNDGLDTLETIPDAVPAVLTEPPIEDQLAWHTLWPESHKLYG-HGNELFSLCCDHEGK 610

Query: 142 LVTSSCKS 149
           LV SSCK+
Sbjct: 611 LVASSCKA 617

[Close]

BLAST of Cp4.1LG01g13860.1 vs. TAIR 10
Match: AT1G49540.1 (elongator protein 2 )

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-21
Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 84  GNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGKLV 143
           G EGLDT ET+P A P  L EPPIE QLA+HTLWPESHKLY  HGNELFSLC D  G LV
Sbjct: 555 GGEGLDTFETVPEAAPAELKEPPIEDQLAFHTLWPESHKLY-GHGNELFSLCSDHKGNLV 614

Query: 144 TSSCKS 150
            SSCK+
Sbjct: 615 ASSCKA 619

HSP 2 Score: 75.9 bits (185), Expect = 3.7e-14
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 8  EVEVNGAFIGAGCNIIVNNVPWGACDLVAFGAQNADAIAIAIFSPKSAQILTTFSGHK 66
          +VE    FIGAGCN +VNNV WGA  LV+FGAQN    A+A+F PK+AQILTT  GHK
Sbjct: 6  KVEAKRVFIGAGCNRVVNNVSWGASGLVSFGAQN----AVAVFCPKTAQILTTLPGHK 59

[Close]

BLAST of Cp4.1LG01g13860.1 vs. TAIR 10
Match: AT1G49540.2 (elongator protein 2 )

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-21
Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 84  GNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGKLV 143
           G EGLDT ET+P A P  L EPPIE QLA+HTLWPESHKLY  HGNELFSLC D  G LV
Sbjct: 557 GGEGLDTFETVPEAAPAELKEPPIEDQLAFHTLWPESHKLY-GHGNELFSLCSDHKGNLV 616

Query: 144 TSSCKS 150
            SSCK+
Sbjct: 617 ASSCKA 621

HSP 2 Score: 75.9 bits (185), Expect = 3.7e-14
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 8  EVEVNGAFIGAGCNIIVNNVPWGACDLVAFGAQNADAIAIAIFSPKSAQILTTFSGHK 66
          +VE    FIGAGCN +VNNV WGA  LV+FGAQN    A+A+F PK+AQILTT  GHK
Sbjct: 6  KVEAKRVFIGAGCNRVVNNVSWGASGLVSFGAQN----AVAVFCPKTAQILTTLPGHK 59

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g13860.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I1S7	2.6e-20	72.73	Elongator complex protein 2 OS=Arabidopsis thaliana OX=3702 GN=ELP2 PE=1 SV=1	[more]
Q86H45	6.6e-08	43.48	Probable elongator complex protein 2 OS=Dictyostelium discoideum OX=44689 GN=elp...	[more]
Q5EBD9	1.5e-07	33.33	Elongator complex protein 2 OS=Xenopus tropicalis OX=8364 GN=elp2 PE=2 SV=1	[more]
Q7K4B3	4.7e-06	29.50	Probable elongator complex protein 2 OS=Drosophila melanogaster OX=7227 GN=Elp2 ...	[more]
Q6IA86	4.7e-06	46.15	Elongator complex protein 2 OS=Homo sapiens OX=9606 GN=ELP2 PE=1 SV=2	[more]

BLAST of Cp4.1LG01g13860.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525984.1	9.21e-52	100.00	elongator complex protein 2-like isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_023525985.1	7.53e-51	100.00	elongator complex protein 2-like isoform X5 [Cucurbita pepo subsp. pepo]	[more]
KAF5450938.1	1.06e-30	85.07	hypothetical protein F2P56_031247 [Juglans regia]	[more]
KAG7013001.1	4.76e-29	85.29	Elongator complex protein 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023542024.1	2.02e-28	85.29	elongator complex protein 2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG01g13860.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1J3DTP4	3.54e-33	38.81	Elongator complex protein 2 OS=Noccaea caerulescens OX=107243 GN=GA_TR19303_c1_g...	[more]
A0A6J1HYF8	9.80e-29	85.29	elongator complex protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111467402 PE=4 SV=...	[more]
A0A6J1FZS0	9.80e-29	85.29	elongator complex protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111449377 PE=4 S...	[more]
A0A0A0KR67	2.48e-28	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G610440 PE=4 SV=1	[more]
A0A6P9E751	2.48e-28	83.82	elongator complex protein 2-like OS=Juglans regia OX=51240 GN=LOC109013148 PE=4 ...	[more]

BLAST of Cp4.1LG01g13860.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49540.1	1.8e-21	72.73	elongator protein 2	[more]
AT1G49540.2	1.8e-21	72.73	elongator protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR42968:SF5	ELONGATOR COMPLEX PROTEIN 2	coord: 8..65
None	No IPR available	PANTHER	PTHR42968	WD REPEAT-CONTAINING	coord: 8..65

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g13860	Cp4.1LG01g13860	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g13860.1:three_prime_utr:001	Cp4.1LG01g13860.1:three_prime_utr:001	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g13860.1:exon:004	Cp4.1LG01g13860.1:exon:004	exon
Cp4.1LG01g13860.1:exon:003	Cp4.1LG01g13860.1:exon:003	exon
Cp4.1LG01g13860.1:exon:002	Cp4.1LG01g13860.1:exon:002	exon
Cp4.1LG01g13860.1:exon:001	Cp4.1LG01g13860.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g13860.1:cds:004	Cp4.1LG01g13860.1:cds:004	CDS
Cp4.1LG01g13860.1:cds:003	Cp4.1LG01g13860.1:cds:003	CDS
Cp4.1LG01g13860.1:cds:002	Cp4.1LG01g13860.1:cds:002	CDS
Cp4.1LG01g13860.1:cds:001	Cp4.1LG01g13860.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g13860.1	Cp4.1LG01g13860.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016573	histone acetylation
biological_process	GO:1901535	regulation of DNA demethylation
biological_process	GO:0044030	regulation of DNA methylation