Cp4.1LG00g01090.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG00g01090.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-type E3 ubiquitin transferase
Location	Cp4.1LG00: 2225311 .. 2229242 (+)
Sequence length	879
RNA-Seq Expression	Cp4.1LG00g01090.1
Synteny	Cp4.1LG00g01090.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTATAACAACCATGTCTCCGCCACCTTCACCGGAGTTATCCGTCGACGTTCTATCAACTGTGGATCTCGACTTCCTAAATTTCGCCGGACTGTTGATTCTAGCGGTGACGATCATGTACTTCATTTACACCTATTACGAACATAAATACTGGAATCGAAGCCGAGATATCGAAGGCGGAAGGTCGGCGGCTACGGCGGCGGTAGGATCTTCTGGAGAGGATCGAGGAGGAGCGACGGCGGTGATTTCGACGAGGCTGTTTCAGTACGGAGAGCGAGGAATGGTAGGGAAAAATGCTGATTGTTCGATTTGCTTAGATGAATTCGTAGAAGGTGAGATTTGTCGAATGCTTCCAAAATGCAAACACGTTTTTCATCGATTTTGCATCGATCAATGGCTTCCTAATGAACGCCATTGTCCTCTCTGTCGTTCCCCTGTTCATGTTCGTTTCATTTTTGCTCATCGCTCTTGAAACATTCTTTTATTTATTTGCGATTTAGATTTTTTTATTTTTGTTTTTTTGTTCGTAATTGTGTATAATTTGTTCATTGTTCATCATTAGCCTTCTTTGAATCGAAACAAACTATTTGAGTTTGATTTTGAAATATCAAAACTGATTGATTTGTTAGTTCCAGAGAATAGTAGTTTGTTTGTGTTGTAGTTGTTTATGGATCCACTTTATTGACTCATTCTTTTCAAATTTTTAGTGCTGAAAATGAGTTTACTCTCTGTTCCCATTTAATCACTCATATTATCTTTATCATATGATGATTCGATTTTCAGAACATTATTCGGAATCTGATTAATTTGATCATACATTGATGAAAAAATGCACCGATTATTATCTCAAATCAAATGATGAAAGATCTAGATAAAATTTCTGAGTTAGTTGGATTAGTAACAGATAGGATTGAGTAATATAATCCCTAATCTGAATCAAATTGATCCAATTCTTATGATTTTAGTTTGATAATCTAAATTTATTAAGTTATCTGAGTCATGTGGACCGGACCTGAATCTTAAAAATTAAGATATAATTCTAATAAAATCAAATTACTCTAATATTTAACCAGATTAGGGCAAGGAAATTTATACATTTTTTAATGTGAAAATATTTTTAGGTAAGTTAAATTTGAAGTTTTTATTATTATTATTTTTTTTTTTGGAATAAAGTTAATTTTATTAAATCAGGCTAATTTGAATATATATGATTAGGAAAAGGAAAACACCAAATTCAAAGGTGTGTATTATGATAATAAATTCGATTAAAATTCCCTTCCACCAAAATTAAATAATAATTAAACCGATAATTAAAATAAATCAAAAAACAAAATCCGAAAAAATCAATAACAAAGTTAATGCTCAAAACTAAAATACTTTAAAAAATCAATTCTCCAAATTAATTTTTTTTTTTTTCATATTTAACGTTGAGCTGTAGAAAATAATTGGGACCTTTTAAGAACTATTAAATTCGACTTTTGATCTCGTGATTTTTAATGAGTCGTCGATTTTACGGGAGAAAAATTGGTAAACCATCTACATAACCTTACGGTTTCATCCTCTCAAACCATCCAAGTATTTCCGCTTATGCTCAGCATCACAAAAAACCGAAAAACTTGAGTGCATAAGGTTGTGGTTAGAAGCTCAACGAAAAATGAACAAATCTCTGTATTAGGATGTCGAAGGTTAGAGGGCAAATATACAAATGTCTCGCGTGGGTTGTTGATGTTATTTAGGTTTCGTATGTGTGGTCAAAAAATAAAAGGCTGTCGGAGACATGCGCGTGATTGTTGGAGGAACCGATTTGCAAAGAGAGAAAAGTTCGAAAATTTTGGAAAATGAGTCATGAAGACGAAGTTTACGAGTTAAATTTCGAGTGACCCAGAAATCAATTGAAATTCGACGATGGTTCAAAAGTCCATTTACGTGCACAACATAGACGTGTTTTAAAACCTTGAGGATAAGTACACTAGGGAAAGCCCAACAAACCCAAGAAATCCAACAATTGACAATATCTACTAGCAGTGTGGACTCCAAGAAGGACAATATAAGTCCAACAATGACAATATCTACTAGCAGCAGACTCCAAAAGGACAATATAAGCCCAACAATGACAATATCTACTAGCGGTGGGCTCCAACAAGGACAATATAAGCCCAACAATGACAATATCTACTAGCGGTGGGCTCCAACAAGGACAATATAAGCCCAACAATGACAATATCTACTAGCGGTGGGCTCCAACAAGGACAATATAAGCCCAACAATGACAATATCTACTAGCGGTGGGCTCCAACAAGGACAATATAAGCCCAACAATGACAATATCTACTAGCGGTGGGCTCCAACAAGGACAATATAAGCCCAACAATGACAATATCTACTAGCGGTGGGCTCCAACAAGGACAATATAAGCCCAACAATGACAATATCTACTAGCGGTGGGCTCCAACAAGGACAATATAAGCCCAACAATGACAATATCTACTAGCGGTGGGCTCCAACAAGGACAATATAAGCCCAACAATGACAATATCTACTAGCGGTGGGCTCCAACAAGGACAATATAAGCCCAACAATGACAATATCTACTAGCACTAGGCTCTAACAAAGACAATATAAGCCCAACAATGACAATACCTACCAGTAGTGGGCTTCAACAAGAACAATATAAGCCCAACAATGACAATATCTACTAGCACTTGGCTCTAACAAAGACAATATAAGCCCAACAATGACAATATTTACTAGCAGTGGACTTCAATAGGGACAATATTTGACAATATTTATCAGCAGTGGGCTCCAACAAGGACAATATAAGCCCGACAAGGACAATATAAGCCCAACAATAACAATATTTATTAGCAGTGGGCTCCAACAAGGACAATATAAGCCCAACAATGACAATATTTATTAGTAGTGGGCTCCAACAAACAATGACAATATTTATTAGTAGTGGGCTCCAACAAGGACAATATAAGCCCAACAATGACAATATTTATTAGCAGTGGGCTCCAACAAGGACAATATAAGCCCGACAATGACCATATTTATTAGCAGTGGGCTCCCACAAGGACAATATAAGCCCAACAATGACAATATTTATTAGCAGTGGGCTCCAACAAGGACAATATAAGCCCAACAATGATAATATTTATTAGAAGTGGGCTCCAACAAGGACAATATAAGCCCAACAATAACATTATCTACTCGCAGTGCGCTTGAGATGTACCGCCACAAATTTCAAATTTCAAAGTAGATAAAATCCTATCTTATCTTAAACCATAAATTATCAAAAATTATTTGTGCAAATTAATACGCCAATTCCAAATCCTAAAAGGATTTGAAATTGGGAGATAATTATATATATATATATATATAACAATTAAATCAATCAATCCATGTTCTTCTATCTCGGCCGATTTCAGCAACATTCCTAAATCCGACGGCATCTATGAGTCCCAATATGTCCCACGAGCTGATGGGTCTCATAGTATTGAGCGCCATTGCTATCATTGTGTTCTTGCCGATCTTCATGTTTCGTTGCTATCACAACCGCTTCATGCAAAATCAAACTAGAGCCCTCGATGTTGAGCAACCAAACCATGCAACGCGACTCTTCGCTCGTTTTCGGGCCGAGGTTATGCGGCGACAGTCATCGATAGCAACAACACCTCCTCGACCGAACACCGCGGAGGAAGAAGCCGCCTCCATTGTCACGAAGGTCGCTTACAAAGACATCAAGACGACGGAGGAAGCCGATTCCGATGACTGTTGCGCCATTTGCATTGAAGGGTTTGAAGAGGATGAGATTTGCGGAGTTCTTGATCGTTGTGGTCATTGTTTCCATAAGATTTGTATCGATCAGTGGTTGGGGATCAAGAGTCGTTGCCCTCTGTGTCGCTGTTTGGTTCGTGTTGTATCGGAGAATAA

mRNA sequence

GCTATAACAACCATGTCTCCGCCACCTTCACCGGAGTTATCCGTCGACGTTCTATCAACTGTGGATCTCGACTTCCTAAATTTCGCCGGACTGTTGATTCTAGCGGTGACGATCATGTACTTCATTTACACCTATTACGAACATAAATACTGGAATCGAAGCCGAGATATCGAAGGCGGAAGGTCGGCGGCTACGGCGGCGGTAGGATCTTCTGGAGAGGATCGAGGAGGAGCGACGGCGGTGATTTCGACGAGGCTGTTTCAGTACGGAGAGCGAGGAATGGTAGGGAAAAATGCTGATTGTTCGATTTGCTTAGATGAATTCGTAGAAGGTGAGATTTGTCGAATGCTTCCAAAATGCAAACACGTTTTTCATCGATTTTGCATCGATCAATGGCTTCCTAATGAACGCCATTGTCCTCTCTGTCGTTCCCCTGTTCATCTGATGGGTCTCATAGTATTGAGCGCCATTGCTATCATTGTGTTCTTGCCGATCTTCATGTTTCGTTGCTATCACAACCGCTTCATGCAAAATCAAACTAGAGCCCTCGATGTTGAGCAACCAAACCATGCAACGCGACTCTTCGCTCGTTTTCGGGCCGAGGTTATGCGGCGACAGTCATCGATAGCAACAACACCTCCTCGACCGAACACCGCGGAGGAAGAAGCCGCCTCCATTGTCACGAAGGTCGCTTACAAAGACATCAAGACGACGGAGGAAGCCGATTCCGATGACTGTTGCGCCATTTGCATTGAAGGGTTTGAAGAGGATGAGATTTGCGGAGTTCTTGATCGTTGTGATTTGTATCGATCAGTGGTTGGGGATCAAGAGTCGTTGCCCTCTGTGTCGCTGTTTGGTTCGTGTTGTATCGGAGAATAA

Coding sequence (CDS)

GCTATAACAACCATGTCTCCGCCACCTTCACCGGAGTTATCCGTCGACGTTCTATCAACTGTGGATCTCGACTTCCTAAATTTCGCCGGACTGTTGATTCTAGCGGTGACGATCATGTACTTCATTTACACCTATTACGAACATAAATACTGGAATCGAAGCCGAGATATCGAAGGCGGAAGGTCGGCGGCTACGGCGGCGGTAGGATCTTCTGGAGAGGATCGAGGAGGAGCGACGGCGGTGATTTCGACGAGGCTGTTTCAGTACGGAGAGCGAGGAATGGTAGGGAAAAATGCTGATTGTTCGATTTGCTTAGATGAATTCGTAGAAGGTGAGATTTGTCGAATGCTTCCAAAATGCAAACACGTTTTTCATCGATTTTGCATCGATCAATGGCTTCCTAATGAACGCCATTGTCCTCTCTGTCGTTCCCCTGTTCATCTGATGGGTCTCATAGTATTGAGCGCCATTGCTATCATTGTGTTCTTGCCGATCTTCATGTTTCGTTGCTATCACAACCGCTTCATGCAAAATCAAACTAGAGCCCTCGATGTTGAGCAACCAAACCATGCAACGCGACTCTTCGCTCGTTTTCGGGCCGAGGTTATGCGGCGACAGTCATCGATAGCAACAACACCTCCTCGACCGAACACCGCGGAGGAAGAAGCCGCCTCCATTGTCACGAAGGTCGCTTACAAAGACATCAAGACGACGGAGGAAGCCGATTCCGATGACTGTTGCGCCATTTGCATTGAAGGGTTTGAAGAGGATGAGATTTGCGGAGTTCTTGATCGTTGTGATTTGTATCGATCAGTGGTTGGGGATCAAGAGTCGTTGCCCTCTGTGTCGCTGTTTGGTTCGTGTTGTATCGGAGAATAA

Protein sequence

AITTMSPPPSPELSVDVLSTVDLDFLNFAGLLILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAATAAVGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHLMGLIVLSAIAIIVFLPIFMFRCYHNRFMQNQTRALDVEQPNHATRLFARFRAEVMRRQSSIATTPPRPNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFEEDEICGVLDRCDLYRSVVGDQESLPSVSLFGSCCIGE

Homology

[Close]

BLAST of Cp4.1LG00g01090.1 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 5.1e-13
Identity = 54/183 (29.51%), Postives = 82/183 (44.81%), Query Frame = 0


Query: 8   PPSPELSVDVLSTVDLDFLNFAGLLILAVTIM---YFIYTYYE--HKYWNRSRDIEGGRS 67
           PP P   +D     D    +F+ LLI  + I+   + + +YY    KY +R R      S
Sbjct: 38  PPPPSFYLD--DEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTS 97

Query: 68  AA-------------------------TAAVGSSGEDRGGATAVISTRLFQYGERGMVGK 127
           AA                            +G  G D    + + S  +++Y +     +
Sbjct: 98  AAAINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVE 157

Query: 128 NADCSICLDEFVEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHLMGLIVLSAI 161
           ++DCS+CL EF E E  R+LPKC H FH  CID WL +  +CPLCR+      ++  SA+
Sbjct: 158 SSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRA-----FIVTSSAV 213

[Close]

BLAST of Cp4.1LG00g01090.1 vs. ExPASy Swiss-Prot
Match: Q5XF85 (E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 6.6e-13
Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 71  SGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVFHRFCID 130
           SG D+   TA+ S  LF++       +  DCS+CL +F   EI R+LPKC+H FH  CID
Sbjct: 96  SGLDK---TAIESLPLFRFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCID 155

Query: 131 QWLPNERHCPLCRSPVHL 149
           QWL     CPLCR  V +
Sbjct: 156 QWLEQHATCPLCRDRVSM 170

[Close]

BLAST of Cp4.1LG00g01090.1 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.6e-13
Identity = 52/156 (33.33%), Postives = 74/156 (47.44%), Query Frame = 0


Query: 7   PPPSPELSVDVLSTVDLDFLNFAGLLILAVTIM---YFIYTYYE--HKYWNRSRDIEGGR 66
           PPP P   +D  S+      +F+ LLI  + I+     + +YY    KY +R        
Sbjct: 35  PPPPPSFFLDDDSSSSSS--SFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTS--- 94

Query: 67  SAATAAVGSSGEDRGGATAVISTR-------------LFQYGERGMVGKNADCSICLDEF 126
           S+ T  +  +GE    +T  IST              +++Y         +DCS+CL EF
Sbjct: 95  SSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEF 154

Query: 127 VEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRS 145
            E E  R+LPKC H FH  CID WL +  +CPLCR+
Sbjct: 155 EENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of Cp4.1LG00g01090.1 vs. ExPASy Swiss-Prot
Match: Q9SL78 (Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-12
Identity = 45/155 (29.03%), Postives = 71/155 (45.81%), Query Frame = 0


Query: 2   ITTMSPPPSPELSVDVLSTVDLDFLNFAGLLILAVTIMYFIYTYYEHKYWNRSRDIEGGR 61
           ++  SPPP    +   L    L  +     ++  +T +  +Y    H       D +G R
Sbjct: 20  VSAQSPPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFHNDLRSETDSDGER 79

Query: 62  --------SAATAAVGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEI 121
                        +   SG D+    A+ S   F++     + +  +CS+CL +F + EI
Sbjct: 80  IRHDRLWQGLFNRSSRFSGLDK---KAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEI 139

Query: 122 CRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHL 149
            R+LPKC+H FH  CIDQWL     CPLCR+ V++
Sbjct: 140 LRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNI 171

[Close]

BLAST of Cp4.1LG00g01090.1 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.6e-12
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 79  TAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVFHRFCIDQWLPNERH 138
           TAV++   F  GE    G+   CSICL E++E E+ RM+P+CKH FH +C+D WL     
Sbjct: 118 TAVVNGDGFHDGE----GRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGS 177

Query: 139 CPLCRS 145
           CP+CR+
Sbjct: 178 CPVCRN 179

[Close]

BLAST of Cp4.1LG00g01090.1 vs. NCBI nr
Match: KAG7019192.1 (E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 477 bits (1228), Expect = 1.14e-167
Identity = 244/281 (86.83%), Postives = 249/281 (88.61%), Query Frame = 0


Query: 5   MSPPPSPELSVDVLSTVDLDFLNFAGLLILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA 64
           MSPPPSPELSVDVLSTVDLDFLNFAGL ILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA
Sbjct: 1   MSPPPSPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA 60

Query: 65  TAAVGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVF 124
           TAAVGSSGEDRGGATAVISTRLFQYGERGMVG+NADCSICLDEFVEGEICRMLPKCKHVF
Sbjct: 61  TAAVGSSGEDRGGATAVISTRLFQYGERGMVGQNADCSICLDEFVEGEICRMLPKCKHVF 120

Query: 125 HRFCIDQWLPNERHCPLCRSPVH-------------------LMGLIVLSAIAIIVFLPI 184
           HRFCIDQWLPNERHCPLCRSPVH                   LMGLIVLSAIAI VFL I
Sbjct: 121 HRFCIDQWLPNERHCPLCRSPVHNSATFLNPTAIMSPNMSHELMGLIVLSAIAITVFLSI 180

Query: 185 FMFRCYHNRFMQNQTRALDVEQPNHATRLFARFRAEVMRRQSSIATTPPRPNTAEEEAAS 244
           FMFRCYHN  MQ QTRALDVEQ NHATRLFARFRAE MR+Q SI   PPR NTAEEEAAS
Sbjct: 181 FMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFMRQQQSIVAPPPRSNTAEEEAAS 240

Query: 245 IVTKVAYKDIKTTEEADSDDCCAICIEGFEEDEICGVLDRC 266
           IVTKVAYKDIKTTEEADSDDCCAICIEGF+E+E+CGVLDRC
Sbjct: 241 IVTKVAYKDIKTTEEADSDDCCAICIEGFQEEELCGVLDRC 281

[Close]

BLAST of Cp4.1LG00g01090.1 vs. NCBI nr
Match: XP_023520573.1 (RING-H2 finger protein ATL51-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298 bits (762), Expect = 2.83e-99
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 5   MSPPPSPELSVDVLSTVDLDFLNFAGLLILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA 64
           MSPPPSPELSVDVLSTVDLDFLNFAGLLILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA
Sbjct: 1   MSPPPSPELSVDVLSTVDLDFLNFAGLLILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA 60

Query: 65  TAAVGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVF 124
           TAAVGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVF
Sbjct: 61  TAAVGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVF 120

Query: 125 HRFCIDQWLPNERHCPLCRSPVH 147
           HRFCIDQWLPNERHCPLCRSPVH
Sbjct: 121 HRFCIDQWLPNERHCPLCRSPVH 143

[Close]

BLAST of Cp4.1LG00g01090.1 vs. NCBI nr
Match: KAG6583430.1 (putative RING-H2 finger protein ATL12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 295 bits (754), Expect = 4.65e-98
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 5   MSPPPSPELSVDVLSTVDLDFLNFAGLLILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA 64
           MSPPPSPELSVDVLSTVDLDFLNFAGL ILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA
Sbjct: 1   MSPPPSPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA 60

Query: 65  TAAVGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVF 124
           TAAVGSSGEDRGGATAVISTRLFQYGERGMVG+NADCSICLDEFVEGEICRMLPKCKHVF
Sbjct: 61  TAAVGSSGEDRGGATAVISTRLFQYGERGMVGQNADCSICLDEFVEGEICRMLPKCKHVF 120

Query: 125 HRFCIDQWLPNERHCPLCRSPVH 147
           HRFCIDQWLPNERHCPLCRSPVH
Sbjct: 121 HRFCIDQWLPNERHCPLCRSPVH 143

[Close]

BLAST of Cp4.1LG00g01090.1 vs. NCBI nr
Match: XP_022970579.1 (RING-H2 finger protein ATL14-like [Cucurbita maxima])

HSP 1 Score: 285 bits (728), Expect = 4.17e-94
Identity = 137/143 (95.80%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 5   MSPPPSPELSVDVLSTVDLDFLNFAGLLILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA 64
           MSPPP PELSVDVLSTVDLDFLNFAGL ILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA
Sbjct: 1   MSPPPPPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA 60

Query: 65  TAAVGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVF 124
           TA+VGSSGEDR  ATAVISTRLFQYGERGM GKNADCSICLDEFVEGEICRMLPKCKHVF
Sbjct: 61  TASVGSSGEDRRWATAVISTRLFQYGERGMEGKNADCSICLDEFVEGEICRMLPKCKHVF 120

Query: 125 HRFCIDQWLPNERHCPLCRSPVH 147
           HRFCIDQWLPNERHCPLCRSPVH
Sbjct: 121 HRFCIDQWLPNERHCPLCRSPVH 143

[Close]

BLAST of Cp4.1LG00g01090.1 vs. NCBI nr
Match: XP_022964750.1 (RING-H2 finger protein ATL39-like [Cucurbita moschata])

HSP 1 Score: 284 bits (726), Expect = 7.32e-94
Identity = 138/143 (96.50%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 5   MSPPPSPELSVDVLSTVDLDFLNFAGLLILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA 64
           MSPPPSPELSVDVLSTVDLDFLNFAGL ILAVTIMYFIYTYYEHKYWNRSRDIEGGRSA 
Sbjct: 1   MSPPPSPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGRSA- 60

Query: 65  TAAVGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVF 124
              VGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVF
Sbjct: 61  ---VGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVF 120

Query: 125 HRFCIDQWLPNERHCPLCRSPVH 147
           HRFCIDQWLPNERHCPLCRSPVH
Sbjct: 121 HRFCIDQWLPNERHCPLCRSPVH 139

[Close]

BLAST of Cp4.1LG00g01090.1 vs. ExPASy TrEMBL
Match: A0A6J1I603 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469514 PE=3 SV=1)

HSP 1 Score: 285 bits (728), Expect = 2.02e-94
Identity = 137/143 (95.80%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 5   MSPPPSPELSVDVLSTVDLDFLNFAGLLILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA 64
           MSPPP PELSVDVLSTVDLDFLNFAGL ILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA
Sbjct: 1   MSPPPPPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA 60

Query: 65  TAAVGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVF 124
           TA+VGSSGEDR  ATAVISTRLFQYGERGM GKNADCSICLDEFVEGEICRMLPKCKHVF
Sbjct: 61  TASVGSSGEDRRWATAVISTRLFQYGERGMEGKNADCSICLDEFVEGEICRMLPKCKHVF 120

Query: 125 HRFCIDQWLPNERHCPLCRSPVH 147
           HRFCIDQWLPNERHCPLCRSPVH
Sbjct: 121 HRFCIDQWLPNERHCPLCRSPVH 143

[Close]

BLAST of Cp4.1LG00g01090.1 vs. ExPASy TrEMBL
Match: A0A6J1HLQ2 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464741 PE=3 SV=1)

HSP 1 Score: 284 bits (726), Expect = 3.54e-94
Identity = 138/143 (96.50%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 5   MSPPPSPELSVDVLSTVDLDFLNFAGLLILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA 64
           MSPPPSPELSVDVLSTVDLDFLNFAGL ILAVTIMYFIYTYYEHKYWNRSRDIEGGRSA 
Sbjct: 1   MSPPPSPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGRSA- 60

Query: 65  TAAVGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVF 124
              VGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVF
Sbjct: 61  ---VGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVF 120

Query: 125 HRFCIDQWLPNERHCPLCRSPVH 147
           HRFCIDQWLPNERHCPLCRSPVH
Sbjct: 121 HRFCIDQWLPNERHCPLCRSPVH 139

[Close]

BLAST of Cp4.1LG00g01090.1 vs. ExPASy TrEMBL
Match: A0A6J1I5C3 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469386 PE=3 SV=1)

HSP 1 Score: 204 bits (520), Expect = 8.66e-63
Identity = 105/121 (86.78%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 147 HLMGLIVLSAIAIIVFLPIFMFRCYHNRFMQNQTRALDVEQPNHATRLFARFRAEVMRRQ 206
            LMGL+VL AIAIIVFLPIFMFRCYHNRFM  QTRALDVEQ NHATRLFARFRAEVMR+Q
Sbjct: 4   QLMGLMVLGAIAIIVFLPIFMFRCYHNRFMLYQTRALDVEQTNHATRLFARFRAEVMRQQ 63

Query: 207 SSIATTPPRPNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFEEDEICGVLDRC 266
            SIA  PPRPNTAEEEAASIVTKVAY+DIK T+EADSDDCCAICIEGFEE+EICGV+D C
Sbjct: 64  QSIAVPPPRPNTAEEEAASIVTKVAYRDIKPTKEADSDDCCAICIEGFEEEEICGVVDGC 123

[Close]

BLAST of Cp4.1LG00g01090.1 vs. ExPASy TrEMBL
Match: A0A0A0M0H1 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE=3 SV=1)

HSP 1 Score: 202 bits (513), Expect = 1.61e-61
Identity = 105/155 (67.74%), Postives = 119/155 (76.77%), Query Frame = 0


Query: 3   TTMSPPPSP--ELSVDVLSTVDLDFLNFAGLLILAVTIMYFIYTYYEHKYWNRSRDIEGG 62
           TTM PPP P  EL VDVLST+DLDFLNFAGL  LA+  +YF++T  E KYWNR+ DIEGG
Sbjct: 10  TTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGG 69

Query: 63  RSAATA---AVGSSGED----RGGATAVISTRLFQYGERG-MVGKNADCSICLDEFVEGE 122
           R        +  S  ED    R  + AVISTRLFQYG  G ++GKNADCSICLDEF EGE
Sbjct: 70  RLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGE 129

Query: 123 ICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVH 147
           ICRMLPKCKHVFHRFCID+WLPNER+CP+CRSPV+
Sbjct: 130 ICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVY 164

[Close]

BLAST of Cp4.1LG00g01090.1 vs. ExPASy TrEMBL
Match: A0A6J1HJU0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742 PE=3 SV=1)

HSP 1 Score: 198 bits (503), Expect = 3.21e-60
Identity = 104/120 (86.67%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 147 HLMGLIVLSAIAIIVFLPIFMFRCYHNRFMQNQTRALDVEQPNHATRLFARFRAEVMRRQ 206
            LMGLIVLSAIAIIVFLPIFMFRCYHN  MQ QTRALDVEQ NHATRLFARFRAE M++Q
Sbjct: 4   ELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFMQQQ 63

Query: 207 SSIATTPPRPNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFEEDEICGVLDRC 266
            SIA  PPR NTAEEEAASIVTKVAY+DIKTTEEAD DD CAICIEGFEE+EICGVLDRC
Sbjct: 64  QSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVLDRC 123

[Close]

BLAST of Cp4.1LG00g01090.1 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 9.1e-18
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 79  TAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVFHRFCIDQWLPNERH 138
           T + S ++ QY ++  V +  DCS+CL EF E E  R+LPKCKH FH +CID WL +  +
Sbjct: 195 TVISSIKVCQYSKKDGVVEGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTN 254

Query: 139 CPLCRSPV 147
           CPLCR+P+
Sbjct: 255 CPLCRAPI 262

[Close]

BLAST of Cp4.1LG00g01090.1 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-14
Identity = 54/183 (29.51%), Postives = 82/183 (44.81%), Query Frame = 0


Query: 8   PPSPELSVDVLSTVDLDFLNFAGLLILAVTIM---YFIYTYYE--HKYWNRSRDIEGGRS 67
           PP P   +D     D    +F+ LLI  + I+   + + +YY    KY +R R      S
Sbjct: 38  PPPPSFYLD--DEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTS 97

Query: 68  AA-------------------------TAAVGSSGEDRGGATAVISTRLFQYGERGMVGK 127
           AA                            +G  G D    + + S  +++Y +     +
Sbjct: 98  AAAINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVE 157

Query: 128 NADCSICLDEFVEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHLMGLIVLSAI 161
           ++DCS+CL EF E E  R+LPKC H FH  CID WL +  +CPLCR+      ++  SA+
Sbjct: 158 SSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRA-----FIVTSSAV 213

[Close]

BLAST of Cp4.1LG00g01090.1 vs. TAIR 10
Match: AT4G28890.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 4.7e-14
Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 71  SGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVFHRFCID 130
           SG D+   TA+ S  LF++       +  DCS+CL +F   EI R+LPKC+H FH  CID
Sbjct: 96  SGLDK---TAIESLPLFRFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCID 155

Query: 131 QWLPNERHCPLCRSPVHL 149
           QWL     CPLCR  V +
Sbjct: 156 QWLEQHATCPLCRDRVSM 170

[Close]

BLAST of Cp4.1LG00g01090.1 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 4.7e-14
Identity = 52/156 (33.33%), Postives = 74/156 (47.44%), Query Frame = 0


Query: 7   PPPSPELSVDVLSTVDLDFLNFAGLLILAVTIM---YFIYTYYE--HKYWNRSRDIEGGR 66
           PPP P   +D  S+      +F+ LLI  + I+     + +YY    KY +R        
Sbjct: 35  PPPPPSFFLDDDSSSSSS--SFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTS--- 94

Query: 67  SAATAAVGSSGEDRGGATAVISTR-------------LFQYGERGMVGKNADCSICLDEF 126
           S+ T  +  +GE    +T  IST              +++Y         +DCS+CL EF
Sbjct: 95  SSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEF 154

Query: 127 VEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRS 145
            E E  R+LPKC H FH  CID WL +  +CPLCR+
Sbjct: 155 EENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of Cp4.1LG00g01090.1 vs. TAIR 10
Match: AT2G20030.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 8.0e-14
Identity = 45/155 (29.03%), Postives = 71/155 (45.81%), Query Frame = 0


Query: 2   ITTMSPPPSPELSVDVLSTVDLDFLNFAGLLILAVTIMYFIYTYYEHKYWNRSRDIEGGR 61
           ++  SPPP    +   L    L  +     ++  +T +  +Y    H       D +G R
Sbjct: 20  VSAQSPPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFHNDLRSETDSDGER 79

Query: 62  --------SAATAAVGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEI 121
                        +   SG D+    A+ S   F++     + +  +CS+CL +F + EI
Sbjct: 80  IRHDRLWQGLFNRSSRFSGLDK---KAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEI 139

Query: 122 CRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHL 149
            R+LPKC+H FH  CIDQWL     CPLCR+ V++
Sbjct: 140 LRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNI 171

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g01090.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRQ8	5.1e-13	29.51	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
Q5XF85	6.6e-13	46.15	E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 ...	[more]
Q9LF64	6.6e-13	33.33	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9SL78	1.1e-12	29.03	Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 P...	[more]
Q9M313	5.6e-12	46.97	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]

BLAST of Cp4.1LG00g01090.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019192.1	1.14e-167	86.83	E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023520573.1	2.83e-99	100.00	RING-H2 finger protein ATL51-like [Cucurbita pepo subsp. pepo]	[more]
KAG6583430.1	4.65e-98	98.60	putative RING-H2 finger protein ATL12, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022970579.1	4.17e-94	95.80	RING-H2 finger protein ATL14-like [Cucurbita maxima]	[more]
XP_022964750.1	7.32e-94	96.50	RING-H2 finger protein ATL39-like [Cucurbita moschata]	[more]

BLAST of Cp4.1LG00g01090.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I603	2.02e-94	95.80	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469514 P...	[more]
A0A6J1HLQ2	3.54e-94	96.50	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464741...	[more]
A0A6J1I5C3	8.66e-63	86.78	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469386 P...	[more]
A0A0A0M0H1	1.61e-61	67.74	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE...	[more]
A0A6J1HJU0	3.21e-60	86.67	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742...	[more]

BLAST of Cp4.1LG00g01090.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33565.1	9.1e-18	50.00	RING/U-box superfamily protein	[more]
AT3G03550.1	3.6e-14	29.51	RING/U-box superfamily protein	[more]
AT4G28890.1	4.7e-14	46.15	RING/U-box superfamily protein	[more]
AT5G17600.1	4.7e-14	33.33	RING/U-box superfamily protein	[more]
AT2G20030.1	8.0e-14	29.03	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 101..142 e-value: 4.7E-7 score: 39.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 100..143 e-value: 3.1E-12 score: 46.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 101..143 score: 12.754832
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 78..149 e-value: 6.7E-20 score: 72.1
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 30..147
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 154..267
None	No IPR available	PANTHER	PTHR45676:SF73	E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED	coord: 30..147
None	No IPR available	PANTHER	PTHR45676:SF73	E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED	coord: 154..267
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 101..143 e-value: 2.17877E-15 score: 66.8665
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 91..148

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG00g01090	Cp4.1LG00g01090	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1_LG00_6g00030.1:exon:001	Cp4.1_LG00_6g00030.1:exon:001	exon
Cp4.1_LG00_6g00030.1:exon:002	Cp4.1_LG00_6g00030.1:exon:002	exon
Cp4.1_LG00_6g00030.1:exon:003	Cp4.1_LG00_6g00030.1:exon:003	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1_LG00_6g00030.1:cds:001	Cp4.1_LG00_6g00030.1:cds:001	CDS
Cp4.1_LG00_6g00030.1:cds:002	Cp4.1_LG00_6g00030.1:cds:002	CDS
Cp4.1_LG00_6g00030.1:cds:003	Cp4.1_LG00_6g00030.1:cds:003	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG00g01090.1	Cp4.1LG00g01090.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane