CmoCh20G006810.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G006810.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr20: 3344380 .. 3344866 (+)
Sequence length392
RNA-Seq ExpressionCmoCh20G006810.1
SyntenyCmoCh20G006810.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAGGCTACTTAAAACAAATACAAGATTATTAACAAATAGTCGCTTGCCACGTAGCAAAGTTTACACTGTTAGATCAACGCCGGTCCTCACCCAATCTAACGGTCCAAATATTTCCACGAAGTTTACTCTTATCGACAAATAAACGGCGAGAAAATGCAACACGTGCCGCTCCCGATTACATTATTAGCCCAAACGACCCGTCGGACTCTTAACAACTCACATTGTGCAGCAACCCTTCACCTGTTTTCTTGGAGTGTTTCTTCTCCGGCGGAGACTTTCTCGATTCTCTCTAATATTCGGAATTCCAATACCGGCTTTACGGCATCCGTACATATTCCGGTAATCCTTGATCGGAAAACAGAACTCTGCAAATATCATTCATCATCTCTCTCTATTAATGCAATTTGATTTTCTTGTTGTATCTTCAATTGCAGGATAATCGGGCGTTCTTTTCCGTTCGCGTCGCGGGCGTTGGACTCATCTAG

mRNA sequence

AGGAGGCTACTTAAAACAAATACAAGATTATTAACAAATAGTCGCTTGCCACGTAGCAAAGTTTACACTGTTAGATCAACGCCGGTCCTCACCCAATCTAACGGTCCAAATATTTCCACGAAGTTTACTCTTATCGACAAATAAACGGCGAGAAAATGCAACACGTGCCGCTCCCGATTACATTATTAGCCCAAACGACCCGTCGGACTCTTAACAACTCACATTGTGCAGCAACCCTTCACCTGTTTTCTTGGAGTGTTTCTTCTCCGGCGGAGACTTTCTCGATTCTCTCTAATATTCGGAATTCCAATACCGGCTTTACGGCATCCGTACATATTCCGGATAATCGGGCGTTCTTTTCCGTTCGCGTCGCGGGCGTTGGACTCATCTAG

Coding sequence (CDS)

ATGCAACACGTGCCGCTCCCGATTACATTATTAGCCCAAACGACCCGTCGGACTCTTAACAACTCACATTGTGCAGCAACCCTTCACCTGTTTTCTTGGAGTGTTTCTTCTCCGGCGGAGACTTTCTCGATTCTCTCTAATATTCGGAATTCCAATACCGGCTTTACGGCATCCGTACATATTCCGGATAATCGGGCGTTCTTTTCCGTTCGCGTCGCGGGCGTTGGACTCATCTAG

Protein sequence

MQHVPLPITLLAQTTRRTLNNSHCAATLHLFSWSVSSPAETFSILSNIRNSNTGFTASVHIPDNRAFFSVRVAGVGLI
Homology
[Close]
BLAST of CmoCh20G006810.1 vs. NCBI nr
Match: KAG6570946.1 (hypothetical protein SDJN03_29861, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150.2 bits (378), Expect = 7.3e-33
Identity = 76/78 (97.44%), Postives = 76/78 (97.44%), Query Frame = 0 

Query: 1  MQHVPLPITLLAQTTRRTLNNSHCAATLHLFSWSVSSPAETFSILSNIRNSNTGFTASVH 60
          MQHVPLPITLLAQTTRRTLNNSHCAATLHLFSWSVSSP ETFSILSNIRNSNTGFTASV 
Sbjct: 1  MQHVPLPITLLAQTTRRTLNNSHCAATLHLFSWSVSSPVETFSILSNIRNSNTGFTASVQ 60

Query: 61 IPDNRAFFSVRVAGVGLI 79
          IPDNRAFFSVRVAGVGLI
Sbjct: 61 IPDNRAFFSVRVAGVGLI 78

[Close]
BLAST of CmoCh20G006810.1 vs. NCBI nr
Match: KAG7010785.1 (hypothetical protein SDJN02_27581, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.3 bits (373), Expect = 2.8e-32
Identity = 75/78 (96.15%), Postives = 75/78 (96.15%), Query Frame = 0 

Query: 1  MQHVPLPITLLAQTTRRTLNNSHCAATLHLFSWSVSSPAETFSILSNIRNSNTGFTASVH 60
          MQHVPLPITLLAQTTRRTLNNSHCAATLHLFSWSVSSP ETFSILSNIRNSNTGF ASV 
Sbjct: 1  MQHVPLPITLLAQTTRRTLNNSHCAATLHLFSWSVSSPVETFSILSNIRNSNTGFAASVQ 60

Query: 61 IPDNRAFFSVRVAGVGLI 79
          IPDNRAFFSVRVAGVGLI
Sbjct: 61 IPDNRAFFSVRVAGVGLI 78

The following BLAST results are available for this feature:
BLAST of CmoCh20G006810.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G006810.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G006810.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6570946.17.3e-3397.44hypothetical protein SDJN03_29861, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7010785.12.8e-3296.15hypothetical protein SDJN02_27581, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh20G006810.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh20G006810CmoCh20G006810gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh20G006810.1:exon:1775CmoCh20G006810.1:exon:1775exon
CmoCh20G006810.1:exon:1776CmoCh20G006810.1:exon:1776exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh20G006810.1:five_prime_utrCmoCh20G006810.1:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh20G006810.1:cdsCmoCh20G006810.1:cdsCDS
CmoCh20G006810.1:cdsCmoCh20G006810.1:cds_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh20G006810.1CmoCh20G006810.1-proteinpolypeptide