CmoCh20G006090.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G006090.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	B box-type domain-containing protein
Location	Cmo_Chr20: 2982202 .. 2982594 (+)
Sequence length	393
RNA-Seq Expression	CmoCh20G006090.1
Synteny	CmoCh20G006090.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAGAGGGGTGGTGGAACAGAGGAGCCGCGGTGGTTGCCGGGAGTTTTCGGTGGCTGAGAAGGGTGGTGATTCGGCGGAGGGTGCGGTGGTGATGTGCGAGCTCTGTGACTCGAGGGCTTCATTGTACTGCCAAGCGGATGATGCTTATTTATGTAGGAAATGTGACAAGTGGGTTCATGGTGCTAATTTCTTAGCTCTCAGGCATATTAGGTGCATTCTCTGCGATGTTTGCCAAAACCTTACCCATAAATACCTCATGGGAACCTCTACTCAGGTCCTTCTCCCCACCATCGTCACCTGCAACCAACCTCCTAATGACTGCAACGACAATCGCAATCTTAGCACATGTTGTTCTGTAAGGCTCAAAACGCCTGTTCTCTTTTTGTGA

mRNA sequence

ATGTGCAGAGGGGTGGTGGAACAGAGGAGCCGCGGTGGTTGCCGGGAGTTTTCGGTGGCTGAGAAGGGTGGTGATTCGGCGGAGGGTGCGGTGGTGATGTGCGAGCTCTGTGACTCGAGGGCTTCATTGTACTGCCAAGCGGATGATGCTTATTTATGTAGGAAATGTGACAAGTGGGTTCATGGTGCTAATTTCTTAGCTCTCAGGCATATTAGGTGCATTCTCTGCGATGTTTGCCAAAACCTTACCCATAAATACCTCATGGGAACCTCTACTCAGGTCCTTCTCCCCACCATCGTCACCTGCAACCAACCTCCTAATGACTGCAACGACAATCGCAATCTTAGCACATGTTGTTCTGTAAGGCTCAAAACGCCTGTTCTCTTTTTGTGA

Coding sequence (CDS)

ATGTGCAGAGGGGTGGTGGAACAGAGGAGCCGCGGTGGTTGCCGGGAGTTTTCGGTGGCTGAGAAGGGTGGTGATTCGGCGGAGGGTGCGGTGGTGATGTGCGAGCTCTGTGACTCGAGGGCTTCATTGTACTGCCAAGCGGATGATGCTTATTTATGTAGGAAATGTGACAAGTGGGTTCATGGTGCTAATTTCTTAGCTCTCAGGCATATTAGGTGCATTCTCTGCGATGTTTGCCAAAACCTTACCCATAAATACCTCATGGGAACCTCTACTCAGGTCCTTCTCCCCACCATCGTCACCTGCAACCAACCTCCTAATGACTGCAACGACAATCGCAATCTTAGCACATGTTGTTCTGTAAGGCTCAAAACGCCTGTTCTCTTTTTGTGA

Protein sequence

MCRGVVEQRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTCCSVRLKTPVLFL

Homology

[Close]

BLAST of CmoCh20G006090.1 vs. ExPASy Swiss-Prot
Match: Q9LRM4 (B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.9e-22
Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 1   MCRGVVEQRSR----GGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKC 60
           MCRG+  + SR    GGCR          +     V CELCD  AS++C+AD A+LCRKC
Sbjct: 1   MCRGLNNEESRRSDGGGCRSLC-------TRPSVPVRCELCDGDASVFCEADSAFLCRKC 60

Query: 61  DKWVHGANFLALRHIRCILCDVCQNLTHKYLMGT-STQVLLPTIVTCNQ 105
           D+WVHGANFLA RH+R +LC  CQ LT + L+G     V+LP++ T  +
Sbjct: 61  DRWVHGANFLAWRHVRRVLCTSCQKLTRRCLVGDHDFHVVLPSVTTVGE 102

[Close]

BLAST of CmoCh20G006090.1 vs. ExPASy Swiss-Prot
Match: Q1G3I2 (B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-20
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 1   MCRGVVEQRSR----GGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKC 60
           MCRG  ++  R    GGC+           +  A V CELC   A++YC+AD A+LCRKC
Sbjct: 1   MCRGFEKEEERRSDNGGCQRLCT------ESHKAPVSCELCGENATVYCEADAAFLCRKC 60

Query: 61  DKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTI 100
           D+WVH ANFLA RH+R ++C  C+ LT + L+G +  V+LP I
Sbjct: 61  DRWVHSANFLARRHLRRVICTTCRKLTRRCLVGDNFNVVLPEI 97

[Close]

BLAST of CmoCh20G006090.1 vs. ExPASy Swiss-Prot
Match: Q9LJB7 (B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-12
Identity = 37/90 (41.11%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 31  VVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGT 90
           V  CELC + A L+C AD A+LCR CD   H +NFL  RH R ++C  C++LT  ++ G 
Sbjct: 2   VSFCELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSGP 61

Query: 91  STQVLLPTIVTCNQPPNDCNDNRNLSTCCS 121
               LLP       P   C    + S+CCS
Sbjct: 62  ----LLPW-----PPRTTCCSESSSSSCCS 82

[Close]

BLAST of CmoCh20G006090.1 vs. ExPASy Swiss-Prot
Match: O82256 (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana OX=3702 GN=COL13 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-08
Identity = 29/64 (45.31%), Postives = 35/64 (54.69%), Query Frame = 0


Query: 33 MCELCDSRASL-YCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTS 92
          +C+ CDS  +L YC+AD A LC  CDK VH AN L  +H R +LCD C          T 
Sbjct: 12 LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETE 71

Query: 93 TQVL 96
            VL
Sbjct: 72 RSVL 75

[Close]

BLAST of CmoCh20G006090.1 vs. ExPASy Swiss-Prot
Match: O22800 (Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana OX=3702 GN=COL14 PE=1 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-08
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 24 GDSAEGAVVMCELCDSR-ASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVC 80
          G S   +VV CE C  R A L+C+AD A LC  CD+ VH AN L+ +H+R  +CD C
Sbjct: 2  GTSTTESVVACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNC 58

[Close]

BLAST of CmoCh20G006090.1 vs. ExPASy TrEMBL
Match: A0A6J1JGF8 (B-box domain protein 30-like OS=Cucurbita maxima OX=3661 GN=LOC111484160 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.8e-67
Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MCRGVVEQRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWV 60
           MCRGVVEQRS GGCR+FS AEKGGDSAEGAVVMCELC+SRASLYCQADDAYLCRKCDKWV
Sbjct: 34  MCRGVVEQRSHGGCRDFSAAEKGGDSAEGAVVMCELCNSRASLYCQADDAYLCRKCDKWV 93

Query: 61  HGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTCCS 120
           HGANFLALRHIRCILC VCQNLTHKYLMGTSTQVLLPTIVTC+QPPNDCN NRNL+TCCS
Sbjct: 94  HGANFLALRHIRCILCSVCQNLTHKYLMGTSTQVLLPTIVTCDQPPNDCNGNRNLNTCCS 153

Query: 121 VRLKTPVLFL 131
           VRLKTPVLFL
Sbjct: 154 VRLKTPVLFL 163

[Close]

BLAST of CmoCh20G006090.1 vs. ExPASy TrEMBL
Match: A0A5D3CSP7 (Zinc finger protein CONSTANS-LIKE 14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold61715G00010 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.9e-48
Identity = 100/141 (70.92%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 1   MCRGVVE-----------QRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADD 60
           MCRGV E              RGGCR+  V +KG  SA G V+MCELC+S+ASLYCQADD
Sbjct: 1   MCRGVEEGNHGHGHGHSHGHGRGGCRQSPVIQKGDVSAAG-VLMCELCNSKASLYCQADD 60

Query: 61  AYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDC 120
           AYLCRKCDKWVHGANFLALRHIRCILCDVCQNLT KYLMGTST+VLLPTI+ C +  NDC
Sbjct: 61  AYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTQKYLMGTSTEVLLPTIIACTK-ANDC 120

Query: 121 NDNRNLSTCCSVRLKTPVLFL 131
           N+N NL+TCCSV LK P LFL
Sbjct: 121 NNNGNLNTCCSVMLKRPFLFL 139

[Close]

BLAST of CmoCh20G006090.1 vs. ExPASy TrEMBL
Match: A0A5A7TI11 (Zinc finger protein CONSTANS-LIKE 14 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold266G00060 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.9e-48
Identity = 100/141 (70.92%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 1   MCRGVVE-----------QRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADD 60
           MCRGV E              RGGCR+  V +KG  SA G V+MCELC+S+ASLYCQADD
Sbjct: 1   MCRGVEEGNHGHRHGHSHGHGRGGCRQSPVIQKGDVSAAG-VLMCELCNSKASLYCQADD 60

Query: 61  AYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDC 120
           AYLCRKCDKWVHGANFLALRHIRCILCDVCQNLT KYLMGTST+VLLPTI+ C +  NDC
Sbjct: 61  AYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTQKYLMGTSTEVLLPTIIACTK-ANDC 120

Query: 121 NDNRNLSTCCSVRLKTPVLFL 131
           N+N NL+TCCSV LK P LFL
Sbjct: 121 NNNGNLNTCCSVMLKRPFLFL 139

[Close]

BLAST of CmoCh20G006090.1 vs. ExPASy TrEMBL
Match: A0A0A0LTB0 (B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G423560 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 8.0e-46
Identity = 96/135 (71.11%), Postives = 106/135 (78.52%), Query Frame = 0


Query: 1   MCRGVVE-----QRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRK 60
           MCRGV E        R GCR+  V +KG  SA G VVMCELC+S+ASLYCQADDAYLCRK
Sbjct: 1   MCRGVEEGNHGHAHGRDGCRQSPVIQKGVVSAAG-VVMCELCNSKASLYCQADDAYLCRK 60

Query: 61  CDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNL 120
           CDKWVHGANFLALRHIRCILC+VCQNLT KYLMGTST+VLLPTI+ C +  NDCN+N N 
Sbjct: 61  CDKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIIACAE-ANDCNNNGNR 120

Query: 121 STCCSVRLKTPVLFL 131
           + CCSV  K P LFL
Sbjct: 121 NPCCSVMFKRPFLFL 133

[Close]

BLAST of CmoCh20G006090.1 vs. ExPASy TrEMBL
Match: A0A2C9UPR0 (B box-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G073800 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 8.2e-35
Identity = 76/132 (57.58%), Postives = 92/132 (69.70%), Query Frame = 0


Query: 1   MCRGVVEQRSRGG--CREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDK 60
           MCRGV E+    G  CR+    E G  +   ++V CELC S+ASLYCQAD+A+LCRKCDK
Sbjct: 1   MCRGVEERSHSHGRFCRKQEEEEAGSGNETSSLVCCELCGSQASLYCQADNAFLCRKCDK 60

Query: 61  WVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTC 120
           WVHGANFLA RHIRC LC+ CQNLT +YL+G ST+++LPTIV+  +    CN N N    
Sbjct: 61  WVHGANFLAFRHIRCFLCNTCQNLTQRYLIGASTEIVLPTIVSLRERRQGCNTN-NDDKL 120

Query: 121 CSVRLKTPVLFL 131
           CS  LK P LFL
Sbjct: 121 CSTSLKMPFLFL 131

[Close]

BLAST of CmoCh20G006090.1 vs. NCBI nr
Match: KAG6570870.1 (B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010718.1 B-box domain protein 31, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.5 bits (698), Expect = 9.6e-70
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MCRGVVEQRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWV 60
           MCRGVVEQRS GGCREFS AEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWV
Sbjct: 1   MCRGVVEQRSHGGCREFSAAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWV 60

Query: 61  HGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTCCS 120
           HGANFLALRHIRCILC+VCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTCCS
Sbjct: 61  HGANFLALRHIRCILCNVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTCCS 120

Query: 121 VRLKTPVLFL 131
           VRLKTPVLFL
Sbjct: 121 VRLKTPVLFL 130

[Close]

BLAST of CmoCh20G006090.1 vs. NCBI nr
Match: XP_023512381.1 (B-box domain protein 31-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.0 bits (689), Expect = 1.1e-68
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MCRGVVEQRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWV 60
           MCRGVVEQRS GGCREFS AEKGGDSAEGAV+MCELCDSRASLYCQADDAYLCRKCDKWV
Sbjct: 51  MCRGVVEQRSHGGCREFSAAEKGGDSAEGAVLMCELCDSRASLYCQADDAYLCRKCDKWV 110

Query: 61  HGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTCCS 120
           HGANFLALRHIRCILC+VCQ LTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTCCS
Sbjct: 111 HGANFLALRHIRCILCNVCQKLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTCCS 170

Query: 121 VRLKTPVLFL 131
           VRLKTPVLFL
Sbjct: 171 VRLKTPVLFL 180

[Close]

BLAST of CmoCh20G006090.1 vs. NCBI nr
Match: XP_022986418.1 (B-box domain protein 30-like [Cucurbita maxima])

HSP 1 Score: 264.2 bits (674), Expect = 5.8e-67
Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MCRGVVEQRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWV 60
           MCRGVVEQRS GGCR+FS AEKGGDSAEGAVVMCELC+SRASLYCQADDAYLCRKCDKWV
Sbjct: 34  MCRGVVEQRSHGGCRDFSAAEKGGDSAEGAVVMCELCNSRASLYCQADDAYLCRKCDKWV 93

Query: 61  HGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTCCS 120
           HGANFLALRHIRCILC VCQNLTHKYLMGTSTQVLLPTIVTC+QPPNDCN NRNL+TCCS
Sbjct: 94  HGANFLALRHIRCILCSVCQNLTHKYLMGTSTQVLLPTIVTCDQPPNDCNGNRNLNTCCS 153

Query: 121 VRLKTPVLFL 131
           VRLKTPVLFL
Sbjct: 154 VRLKTPVLFL 163

[Close]

BLAST of CmoCh20G006090.1 vs. NCBI nr
Match: KAA0042428.1 (Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 6.0e-48
Identity = 100/141 (70.92%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 1   MCRGVVE-----------QRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADD 60
           MCRGV E              RGGCR+  V +KG  SA G V+MCELC+S+ASLYCQADD
Sbjct: 1   MCRGVEEGNHGHRHGHSHGHGRGGCRQSPVIQKGDVSAAG-VLMCELCNSKASLYCQADD 60

Query: 61  AYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDC 120
           AYLCRKCDKWVHGANFLALRHIRCILCDVCQNLT KYLMGTST+VLLPTI+ C +  NDC
Sbjct: 61  AYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTQKYLMGTSTEVLLPTIIACTK-ANDC 120

Query: 121 NDNRNLSTCCSVRLKTPVLFL 131
           N+N NL+TCCSV LK P LFL
Sbjct: 121 NNNGNLNTCCSVMLKRPFLFL 139

[Close]

BLAST of CmoCh20G006090.1 vs. NCBI nr
Match: TYK13446.1 (Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 6.0e-48
Identity = 100/141 (70.92%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 1   MCRGVVE-----------QRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADD 60
           MCRGV E              RGGCR+  V +KG  SA G V+MCELC+S+ASLYCQADD
Sbjct: 1   MCRGVEEGNHGHGHGHSHGHGRGGCRQSPVIQKGDVSAAG-VLMCELCNSKASLYCQADD 60

Query: 61  AYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDC 120
           AYLCRKCDKWVHGANFLALRHIRCILCDVCQNLT KYLMGTST+VLLPTI+ C +  NDC
Sbjct: 61  AYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTQKYLMGTSTEVLLPTIIACTK-ANDC 120

Query: 121 NDNRNLSTCCSVRLKTPVLFL 131
           N+N NL+TCCSV LK P LFL
Sbjct: 121 NNNGNLNTCCSVMLKRPFLFL 139

[Close]

BLAST of CmoCh20G006090.1 vs. TAIR 10
Match: AT3G21890.1 (B-box type zinc finger family protein )

HSP 1 Score: 105.1 bits (261), Expect = 4.2e-23
Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 1   MCRGVVEQRSR----GGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKC 60
           MCRG+  + SR    GGCR          +     V CELCD  AS++C+AD A+LCRKC
Sbjct: 1   MCRGLNNEESRRSDGGGCRSLC-------TRPSVPVRCELCDGDASVFCEADSAFLCRKC 60

Query: 61  DKWVHGANFLALRHIRCILCDVCQNLTHKYLMGT-STQVLLPTIVTCNQ 105
           D+WVHGANFLA RH+R +LC  CQ LT + L+G     V+LP++ T  +
Sbjct: 61  DRWVHGANFLAWRHVRRVLCTSCQKLTRRCLVGDHDFHVVLPSVTTVGE 102

[Close]

BLAST of CmoCh20G006090.1 vs. TAIR 10
Match: AT4G15248.1 (B-box type zinc finger family protein )

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-21
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 1   MCRGVVEQRSR----GGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKC 60
           MCRG  ++  R    GGC+           +  A V CELC   A++YC+AD A+LCRKC
Sbjct: 1   MCRGFEKEEERRSDNGGCQRLCT------ESHKAPVSCELCGENATVYCEADAAFLCRKC 60

Query: 61  DKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTI 100
           D+WVH ANFLA RH+R ++C  C+ LT + L+G +  V+LP I
Sbjct: 61  DRWVHSANFLARRHLRRVICTTCRKLTRRCLVGDNFNVVLPEI 97

[Close]

BLAST of CmoCh20G006090.1 vs. TAIR 10
Match: AT3G21150.1 (B-box 32 )

HSP 1 Score: 74.3 bits (181), Expect = 7.9e-14
Identity = 37/90 (41.11%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 31  VVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGT 90
           V  CELC + A L+C AD A+LCR CD   H +NFL  RH R ++C  C++LT  ++ G 
Sbjct: 2   VSFCELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSGP 61

Query: 91  STQVLLPTIVTCNQPPNDCNDNRNLSTCCS 121
               LLP       P   C    + S+CCS
Sbjct: 62  ----LLPW-----PPRTTCCSESSSSSCCS 82

[Close]

BLAST of CmoCh20G006090.1 vs. TAIR 10
Match: AT4G27310.1 (B-box type zinc finger family protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-12
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 34 CELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLT 84
          C+LC+  A +YC++D A LC  CD  VHGANFL  +H RC+LC  CQ+LT
Sbjct: 5  CDLCNGVARMYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQSLT 54

[Close]

BLAST of CmoCh20G006090.1 vs. TAIR 10
Match: AT5G54470.1 (B-box type zinc finger family protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-12
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 34  CELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQ 93
           CELC   A +YC++D A LC  CD  VHGANFL  +H+RC+LC  CQ+ T     G +  
Sbjct: 6   CELCCGVARMYCESDQASLCWDCDGKVHGANFLVAKHMRCLLCSACQSHTPWKASGLN-- 65

Query: 94  VLLPTIVTC 103
            L PT+  C
Sbjct: 66  -LGPTVSIC 71

The following BLAST results are available for this feature:

BLAST of CmoCh20G006090.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRM4	5.9e-22	47.71	B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1	[more]
Q1G3I2	1.9e-20	45.63	B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1	[more]
Q9LJB7	1.1e-12	41.11	B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1	[more]
O82256	2.8e-08	45.31	Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana OX=3702 GN=COL13 PE...	[more]
O22800	3.7e-08	49.12	Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana OX=3702 GN=COL14 PE...	[more]

BLAST of CmoCh20G006090.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JGF8	2.8e-67	93.85	B-box domain protein 30-like OS=Cucurbita maxima OX=3661 GN=LOC111484160 PE=4 SV...	[more]
A0A5D3CSP7	2.9e-48	70.92	Zinc finger protein CONSTANS-LIKE 14 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TI11	2.9e-48	70.92	Zinc finger protein CONSTANS-LIKE 14 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0LTB0	8.0e-46	71.11	B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G423560 ...	[more]
A0A2C9UPR0	8.2e-35	57.58	B box-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G07...	[more]

BLAST of CmoCh20G006090.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570870.1	9.6e-70	97.69	B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia] >KAG701...	[more]
XP_023512381.1	1.1e-68	96.15	B-box domain protein 31-like [Cucurbita pepo subsp. pepo]	[more]
XP_022986418.1	5.8e-67	93.85	B-box domain protein 30-like [Cucurbita maxima]	[more]
KAA0042428.1	6.0e-48	70.92	Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa]	[more]
TYK13446.1	6.0e-48	70.92	Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa]	[more]

BLAST of CmoCh20G006090.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21890.1	4.2e-23	47.71	B-box type zinc finger family protein	[more]
AT4G15248.1	1.4e-21	45.63	B-box type zinc finger family protein	[more]
AT3G21150.1	7.9e-14	41.11	B-box 32	[more]
AT4G27310.1	1.5e-12	56.00	B-box type zinc finger family protein	[more]
AT5G54470.1	2.0e-12	47.83	B-box type zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 29..75 e-value: 6.1E-9 score: 45.7
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 33..61 e-value: 3.4E-5 score: 23.9
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 29..75 score: 8.74511
None	No IPR available	PANTHER	PTHR31717:SF100	B-BOX ZINC FINGER PROTEIN 29	coord: 29..104
None	No IPR available	PANTHER	PTHR31717	ZINC FINGER PROTEIN CONSTANS-LIKE 10	coord: 29..104
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 34..73 e-value: 2.29902E-12 score: 55.3815

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh20G006090	CmoCh20G006090	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh20G006090.1:exon:1986	CmoCh20G006090.1:exon:1986	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh20G006090.1:cds	CmoCh20G006090.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh20G006090.1	CmoCh20G006090.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding