CmoCh20G004280.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G004280.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr20: 2015968 .. 2016396 (+)
Sequence length	306
RNA-Seq Expression	CmoCh20G004280.1
Synteny	CmoCh20G004280.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGGCTTCTCCTCCAAATTCTCTTCCATCAGTATTTGGCTGATGTACTTAAGAACACTTTCCCTGAAGTCTAACTCGTCCGAGGAAGAGTCGCCATCAGGGCTTTGCCCTGAAGCCACCACACCCAAGTTCAAATCCACCGCTCCTGAAAACTTGTTAGGATCTGGTTGGTAGGGGAAAAGGGAATTATCAACGAAAGGAACAAAATCTGGAGATGGGTCGTTGAATACAAAATCATTTAGTCTAAACCCATCATCGTATGATTGGGTTAGAGAGGTCTGATAATCAGCCATGCGATCTGTGAAAGCGTTGAGGTTTGGATCCATAGTTATCTACGCCTCCAAACAGAAACAAGGTCAACCAAGAGAATCAAAAGATTTTAGGTTTATAAAGTCACCTGAGAAAAGCGAAGGGAAGGTAAAGTGA

mRNA sequence

ATGCAAGGCTTCTCCTCCAAATTCTCTTCCATCAGTATTTGGCTGATGTACTTAAGAACACTTTCCCTGAAGTCTAACTCGTCCGAGGAAGAGTCGCCATCAGGGCTTTGCCCTGAAGCCACCACACCCAAGTTCAAATCCACCGCTCCTGAAAACTTGTTAGGATCTGCCATGCGATCTGTGAAAGCGTTGAGGTTTGGATCCATAGTTATCTACGCCTCCAAACAGAAACAAGGTCAACCAAGAGAATCAAAAGATTTTAGGTTTATAAAGTCACCTGAGAAAAGCGAAGGGAAGGTAAAGTGA

Coding sequence (CDS)

ATGCAAGGCTTCTCCTCCAAATTCTCTTCCATCAGTATTTGGCTGATGTACTTAAGAACACTTTCCCTGAAGTCTAACTCGTCCGAGGAAGAGTCGCCATCAGGGCTTTGCCCTGAAGCCACCACACCCAAGTTCAAATCCACCGCTCCTGAAAACTTGTTAGGATCTGCCATGCGATCTGTGAAAGCGTTGAGGTTTGGATCCATAGTTATCTACGCCTCCAAACAGAAACAAGGTCAACCAAGAGAATCAAAAGATTTTAGGTTTATAAAGTCACCTGAGAAAAGCGAAGGGAAGGTAAAGTGA

Protein sequence

MQGFSSKFSSISIWLMYLRTLSLKSNSSEEESPSGLCPEATTPKFKSTAPENLLGSAMRSVKALRFGSIVIYASKQKQGQPRESKDFRFIKSPEKSEGKVK

Homology

The following BLAST results are available for this feature:

BLAST of CmoCh20G004280.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G004280.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G004280.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G004280.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..101

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh20G004280	CmoCh20G004280	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh20G004280.1:exon:4194	CmoCh20G004280.1:exon:4194	exon
CmoCh20G004280.1:exon:4193	CmoCh20G004280.1:exon:4193	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh20G004280.1:cds	CmoCh20G004280.1:cds	CDS
CmoCh20G004280.1:cds	CmoCh20G004280.1:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh20G004280.1	CmoCh20G004280.1-protein	polypeptide