CmoCh19G009030.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G009030.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2
LocationCmo_Chr19: 8501250 .. 8503495 (-)
Sequence length1225
RNA-Seq ExpressionCmoCh19G009030.1
SyntenyCmoCh19G009030.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCGTTTTCTCGAGCAACGGAAGCAGGGTTTAGCATTTGAATGCCCTAAATCTGAGACGGAACTCTGTTTATCGTGGCTGACTGCACATAATTTTTCGCCGCGCTCTCAGATTTAACGATGGCTTCCTTTGCCGCCAGGGCCATTTCCCGATCCTCCTTCGGCAAGGCTGCGACTCTTCTGAGCGTCGGATCCAGAGCAGCTCCGGCTCGTTCATCATTCCGCATTGCTGCTAAACGACCTTTCTCTCAGTGTGCTGTAAGGTAAATTCCTGACAAGCATTCGATTTCGACGAAGCGTGCTCGATGTAAATTAATTATGAAAACTGTGTGAGTTAAGTTATGTATGATGCGTAGACAAATATGCTGAGTTGTTCCATATGTGATGTTTTTCTTTTTCTCTTTTTCTATTTAGGCTTCCAGTTGAAATGAGCTGCTGTGTGGAGTCCATGCTTCCCTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGGTACTTTCTGTCTCTTCTAATTCTTCTAGTAGTTTCAATGGATGCGACTAAGTTATGAGCCAAGAGTTGTTGCCTCCGTGTTCTGCATCTATACTAGAATGAATTTTACTTTTTCCAATGTTTTCGTTATACTGCCACTATTAAGGTTTCTGATTTCTGTTGGCCTAAAAACTGAATAGCTGTGTTGGTCGAATACGACCTCAGCTTCATTGGTTACTTGGATTGCCTTTGTGATGTACAACCGATGGGGGATAACATGTGTACACAATTATCCTATATATTTGGCCCTTAGAATACAGGATGAAAAGGTGGAGGATGAAATAGTGACTGAACGGTCTGTTTTTTCTCGTTTTCTTTGACAAGAAGACAGAAATTTTCATTGATATGATATTTGATGAAAAGTTGCAAGAAACCAAACTCTATATAACAAGCCTAACAGGGAGGGTAATTACAAGGGAAGAACAAAGAGGTTAGGATTTATAATTCGTTCCATCACGATTTGAACTGTTTGAAATAAGAAATAGACAACAATTCTCCAAATAGTCTCAAACTAGTTCGAACCAATACCAGTGTTTTGCGTCAAATATATTTCCCTACTGCCTTTATAATCTTAAATGCTCTTTCAGCTTGGTAGAGCAAATGTCTTATCTGGCCCCTTCTTTCTCACTACTTTTTTTCGGATCAATGAATTGAGAATTCAGTCCTTCGTCCTAAGATAGAGATTAAATGCTGCATTCTGGATTAGGGTCTTCTAACTTCTTCAAAGCTAAAAAATACAGTTCGTTGTTTGTAACGAATCATTTCCCTCCTGCTGTGACGTATGATTTAGCTGTTTATATGTGATGCTTGTATGTTACTCAATCACAACGATTTCATCCACGTCCTTGATATTAAATGTGAGGATACTAATTATAACGTTTAACCAGTGTTCAATGATGATGTGTGATGATGAATTGTCAAAGAGGCAGAAAGTCTTGTTTGCAGAGTTCTACATTGTGACAGTGCCCGCTGCTAAAATACTCGTGCTGATCTGCAGGAATTTGGTTTTCCATGGCTCGAATCTCTGTCTAGCAAGCATGTCTTAGATTCTAAATTTGTGCAACTACGGATTACTAGAATGTATAGGAAGAGATACACATTAGACAGGAAGGCTTCAATAAATTGTCTCGTTATGTTTTAACTCCTTAAAAGGATTGTCTTGCAATTATGAAATAGAAAATCTTACCAAGATGAGAGGAAGGATTCTTCGGCTAGCAGTCTTTATATATCTTGTATATTACTCTATCATGGATGCTTATCAAACTTCATGACCTCTATTAATAGATGTATCGCACAATGTTAACGCCATTTAATATCTATTTGGCAGTGACTGGCTTGCAAACTTCATGATAGACGTTGATTGGAAAAGGTTTCACCTTCTTGGGCAACATGGTCACCCAAGTAAATCTTCGATTGCAACCAGGGTTTGTGTTTGGCAAGCAATCTCATCTTTTAAATTTAGTTTCCTCAGCTTAATCTTGATATTCAACTGAAAGACCCAAATAACAGCCTTTTTCTTATGATATATTTTATTTAGGTTCAGATATGATTTTGGTCTTTGTATCTTTCGTTTCATTAGAAACTAATTCCAAGAACTATGTGCAATTTACCCATTATGATGAGTCGAGCAAATCTGCTAGAGCACATTGATATAGTACCCATGAATGCAAAGG

mRNA sequence

CTCGTTTTCTCGAGCAACGGAAGCAGGGTTTAGCATTTGAATGCCCTAAATCTGAGACGGAACTCTGTTTATCGTGGCTGACTGCACATAATTTTTCGCCGCGCTCTCAGATTTAACGATGGCTTCCTTTGCCGCCAGGGCCATTTCCCGATCCTCCTTCGGCAAGGCTGCGACTCTTCTGAGCGTCGGATCCAGAGCAGCTCCGGCTCGTTCATCATTCCGCATTGCTGCTAAACGACCTTTCTCTCAGTGTGCTGTAAGGCTTCCAGTTGAAATGAGCTGCTGTGTGGAGTCCATGCTTCCCTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGCTGTGTTGGTCGAATACGACCTCAGCTTCATTGGTTACTTGGATTGCCTTTGTGATTGTTCAATGATGATGTGTGATGATGAATTGTCAAAGAGGCAGAAAGTCTTGTTTGCAGAGTTCTACATTGTGACAGTGCCCGCTGCTAAAATACTCGTGCTGATCTGCAGGAATTTGGTTTTCCATGGCTCGAATCTCTGTCTAGCAAGCATGTCTTAGATTCTAAATTTGTGCAACTACGGATTACTAGAATGTATAGGAAGAGATACACATTAGACAGGAAGGCTTCAATAAATTGTCTCGTTATGTTTTAACTCCTTAAAAGGATTGTCTTGCAATTATGAAATAGAAAATCTTACCAAGATGAGAGGAAGGATTCTTCGGCTAGCAGTCTTTATATATCTTGTATATTACTCTATCATGGATGCTTATCAAACTTCATGACCTCTATTAATAGATGTATCGCACAATGTTAACGCCATTTAATATCTATTTGGCAGTGACTGGCTTGCAAACTTCATGATAGACGTTGATTGGAAAAGGTTTCACCTTCTTGGGCAACATGGTCACCCAAGTAAATCTTCGATTGCAACCAGGGTTTGTGTTTGGCAAGCAATCTCATCTTTTAAATTTAGTTTCCTCAGCTTAATCTTGATATTCAACTGAAAGACCCAAATAACAGCCTTTTTCTTATGATATATTTTATTTAGGTTCAGATATGATTTTGGTCTTTGTATCTTTCGTTTCATTAGAAACTAATTCCAAGAACTATGTGCAATTTACCCATTATGATGAGTCGAGCAAATCTGCTAGAGCACATTGATATAGTACCCATGAATGCAAAGG

Coding sequence (CDS)

ATGGCTTCCTTTGCCGCCAGGGCCATTTCCCGATCCTCCTTCGGCAAGGCTGCGACTCTTCTGAGCGTCGGATCCAGAGCAGCTCCGGCTCGTTCATCATTCCGCATTGCTGCTAAACGACCTTTCTCTCAGTGTGCTGTAAGGCTTCCAGTTGAAATGAGCTGCTGTGTGGAGTCCATGCTTCCCTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGCTGTGTTGGTCGAATACGACCTCAGCTTCATTGGTTACTTGGATTGCCTTTGTGATTGTTCAATGATGATGTGTGATGATGAATTGTCAAAGAGGCAGAAAGTCTTGTTTGCAGAGTTCTACATTGTGACAGTGCCCGCTGCTAAAATACTCGTGCTGATCTGCAGGAATTTGGTTTTCCATGGCTCGAATCTCTGTCTAGCAAGCATGTCTTAG

Protein sequence

MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESMLPFHSATSSALMTSMLSVSRHSYGWLSEAVLVEYDLSFIGYLDCLCDCSMMMCDDELSKRQKVLFAEFYIVTVPAAKILVLICRNLVFHGSNLCLASMS
Homology
[Close]
BLAST of CmoCh19G009030.1 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0 

Query: 6  ARAISRSSFGKAATLLSVGSRAAPARSS---FRIAAKRPFSQCAVRLPVEMSCCVESMLP 65
          AR++ R++  ++A   S G  A+ A+S+   FR  A+R      +R PVE+S CVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSEA 90
          +HSAT+SALMTS LS+S  +YGWLS+A
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSDA 95

[Close]
BLAST of CmoCh19G009030.1 vs. ExPASy TrEMBL
Match: A0A6J1GM60 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60
          MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 89
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]
BLAST of CmoCh19G009030.1 vs. ExPASy TrEMBL
Match: A0A6J1GM36 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60
          MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 89
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]
BLAST of CmoCh19G009030.1 vs. ExPASy TrEMBL
Match: A0A6J1HZK6 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.0e-34
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60
          MASFAARAISRSSFG+AATLLSVGSRAAPARSSFRIA+KRPFSQCAVRLPVEMS CVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 89
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]
BLAST of CmoCh19G009030.1 vs. ExPASy TrEMBL
Match: A0A6J1I278 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.0e-34
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60
          MASFAARAISRSSFG+AATLLSVGSRAAPARSSFRIA+KRPFSQCAVRLPVEMS CVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 89
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]
BLAST of CmoCh19G009030.1 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.9e-29
Identity = 76/98 (77.55%), Postives = 83/98 (84.69%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60
          MASFAARAI RSS GKAATLLS G+RAAPARS FRIA+KRPFS  + R+P+EMS CVESM
Sbjct: 1  MASFAARAIFRSSSGKAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEAVLVEYDLSF 99
          LPFHSATSSALMTSMLSVS HSYGWLSE +L  +   F
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSEGILSAFFFFF 98

[Close]
BLAST of CmoCh19G009030.1 vs. NCBI nr
Match: XP_022952575.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 162.9 bits (411), Expect = 2.2e-36
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60
          MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 89
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]
BLAST of CmoCh19G009030.1 vs. NCBI nr
Match: XP_022952574.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 162.9 bits (411), Expect = 2.2e-36
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60
          MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 89
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]
BLAST of CmoCh19G009030.1 vs. NCBI nr
Match: KAG6572259.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011888.1 Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.4 bits (407), Expect = 6.5e-36
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60
          MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVE+SCCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 89
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]
BLAST of CmoCh19G009030.1 vs. NCBI nr
Match: XP_022969309.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-34
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60
          MASFAARAISRSSFG+AATLLSVGSRAAPARSSFRIA+KRPFSQCAVRLPVEMS CVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 89
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]
BLAST of CmoCh19G009030.1 vs. NCBI nr
Match: XP_022969310.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-34
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60
          MASFAARAISRSSFG+AATLLSVGSRAAPARSSFRIA+KRPFSQCAVRLPVEMS CVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 89
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]
BLAST of CmoCh19G009030.1 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-12
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 0 

Query: 5  AARAISRSSFGKA--ATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESMLP 64
          AAR++ RS  G+A  A L S     + ARSSF++  + P S    R PVE+SCCVE+MLP
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLP 62

Query: 65 FHSATSSALMTSMLSVSRHS 83
          +H+AT+SAL+ SMLSVS  S
Sbjct: 63 YHTATASALLNSMLSVSGRS 82

[Close]
BLAST of CmoCh19G009030.1 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-12
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 0 

Query: 5  AARAISRSSFGKA--ATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESMLP 64
          AAR++ RS  G+A  A L S     + ARSSF++  + P S    R PVE+SCCVE+MLP
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLP 62

Query: 65 FHSATSSALMTSMLSVSRHS 83
          +H+AT+SAL+ SMLSVS  S
Sbjct: 63 YHTATASALLNSMLSVSGRS 82

[Close]
BLAST of CmoCh19G009030.1 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 )

HSP 1 Score: 67.8 bits (164), Expect = 9.1e-12
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0 

Query: 6  ARAISRSSFGKAATLLSVGSRAAPARSS---FRIAAKRPFSQCAVRLPVEMSCCVESMLP 65
          AR++ R++  ++A   S G  A+ A+S+   FR  A+R      +R PVE+S CVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSEA 90
          +HSAT+SALMTS LS+S  +YGWLS+A
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSDA 95

[Close]
BLAST of CmoCh19G009030.1 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 )

HSP 1 Score: 67.8 bits (164), Expect = 9.1e-12
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0 

Query: 6  ARAISRSSFGKAATLLSVGSRAAPARSS---FRIAAKRPFSQCAVRLPVEMSCCVESMLP 65
          AR++ R++  ++A   S G  A+ A+S+   FR  A+R      +R PVE+S CVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSEA 90
          +HSAT+SALMTS LS+S  +YGWLS+A
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSDA 95

[Close]
BLAST of CmoCh19G009030.1 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-11
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 0 

Query: 5  AARAISRSSFGKAATL---LSVGSRAAP--ARSSFRIAAKRPFSQCAVRLPVEMSCCVES 64
          AAR++ RS+  +A++     S G +  P  AR++FR+  + P +    R PVE+SCCVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 MLPFHSATSSALMTSMLSVSRHSYGWLSEAV 91
          MLP+H+AT+SAL+ SMLSVSR   GW+ + +
Sbjct: 63 MLPYHTATASALLNSMLSVSRR--GWIVDGL 91

The following BLAST results are available for this feature:
BLAST of CmoCh19G009030.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93ZJ31.3e-1049.43Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
BLAST of CmoCh19G009030.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GM601.1e-36100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A6J1GM361.1e-36100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A6J1HZK61.0e-3496.59protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A6J1I2781.0e-3496.59protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A5D3CTR84.9e-2977.55Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
BLAST of CmoCh19G009030.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952575.12.2e-36100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
XP_022952574.12.2e-36100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
KAG6572259.16.5e-3698.86Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurb... [more]
XP_022969309.12.1e-3496.59protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_022969310.12.1e-3496.59protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
BLAST of CmoCh19G009030.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G33847.13.1e-1252.50unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
AT2G33847.23.1e-1252.50unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
AT2G20585.19.1e-1249.43nuclear fusion defective 6 [more]
AT2G20585.29.1e-1249.43nuclear fusion defective 6 [more]
AT1G28395.21.2e-1145.05unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033251Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrialPANTHERPTHR33156:SF48PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIALcoord: 3..88
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 3..88

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh19G009030CmoCh19G009030gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G009030.1:exon:1315CmoCh19G009030.1:exon:1315exon
CmoCh19G009030.1:exon:1314CmoCh19G009030.1:exon:1314exon
CmoCh19G009030.1:exon:1313CmoCh19G009030.1:exon:1313exon
CmoCh19G009030.1:exon:1312CmoCh19G009030.1:exon:1312exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G009030.1:three_prime_utrCmoCh19G009030.1:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G009030.1:cdsCmoCh19G009030.1:cds_4CDS
CmoCh19G009030.1:cdsCmoCh19G009030.1:cds_3CDS
CmoCh19G009030.1:cdsCmoCh19G009030.1:cds_2CDS
CmoCh19G009030.1:cdsCmoCh19G009030.1:cdsCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G009030.1:five_prime_utrCmoCh19G009030.1:five_prime_utrfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh19G009030.1CmoCh19G009030.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000741 karyogamy
cellular_component GO:0016021 integral component of membrane