CmoCh19G003290.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G003290.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	F-box protein At1g10780-like
Location	Cmo_Chr19: 2691946 .. 2693902 (+)
Sequence length	1348
RNA-Seq Expression	CmoCh19G003290.1
Synteny	CmoCh19G003290.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCGCTCCCGGATGCTATTTTTCAGTACGTTTTGTCACATATGAGCAATGCTCGGGATGTGGCAGTCTGCAACTGTGTATCTAAGCGATGGAAATACTCAACACCATACATTAAAAGTCTCTATTTTCCTCGCAATTCCTTCGACAATCATTCAGGTGGGTTGAGTCCCGACATCATCATTTGGAGAATAATATCATCCATTGTTCACTTAGAGGAGCTTGTTGTTTATAGCCCATTTTCTGGTGCTGGTCTTGCTTCATGGCTGTCTAGTGTCGGCCCTTCGCTTCGACGTCTCGAGCTAAGAATGGACAATCTGGTTGATCTTCAGGCTTGTCAAGATAGCCATTCCAAGTTAGAATGCCTTAAATCTGCAGCAAATTTGGAGTCACTTAAATTATGGGGTGTCTTAATGACACATTCACCAAGGTGGGATGTGTTTCAAAAGCTAAGAAACCTTGAGATTGTTGGTGCTAAGTTAGATGATCCTGCTTTGAACACGGCTCTTCGTGCATGTCCTAATCTATCCAACTTATTGCTCCTTGGCTGTGAAGGCCTTACTTCAGTTTCAATTGAACTGAAGCATTTGGAGCAGTGTAAGCTGGATTTCTATGGCTTGGGAAACTGCTCACTCATGATCAATTCTCCTAACATTCAACTCCTTGAAGTTCAAGGCTGTAGCTGGATTAGAGCCTGTGGGACAAGTTCCTTGAGAAGTCTGTCAATATCCAACAATGCAGGTAATCATCATAACTACAAATCTTCTAAGCACACGAATTATGCTCATAACACTCGATAATAGAAGCCCTTTGTGAGATCCCACAGTTAGGAATCACGAATCTCCTCAATGGTACGATATTGTCCACTTTGAGCATAAGCTCTCATTGCTTTGCTTTTGGTTTCCCCAAAATACCTCGTAACAATGGAAATGTAGTCCTTACGTGTTCTCTTGTAGTACATACCTGAAGTCATCAATATAAACCTTTAGCCAATATTCCTTCTTGCATTTTCTCTCTTCTATTCTTTGTATTCATCTAGATCGAGTGTGTGCGTTGTTGTGCGATCCTATCGGTTGGAGAGGGGAAATAAGCATTCTTTATAAGGGTGTAGAAATTTCTTCCTAGTAGACGCATTTTAAAAACCTTGAGGGGAAGTCCGAAAGGAAAAGTCCAAATAAGACAATTATCTACTAACGGAGGGTTTGGGTCGTTACACCTTAATCATGATAACTTAGTTTTTTATTTTGTATGGAAACCTTTGATTCAGGAAGAGTTTACATGGTGGATTTTGATCAGCTGGTTTCATTGGAGTCATTGTCCATAAGAGGAGTTCAATGGTGCTGGGATGCAATAAGCAAAATGCTTGAATTAGGGAGTGAGGTGAAGCATCTTTACATGAAAGTTGAGTTCACCGGAGACTTTGATGCACTTGAACCTTTCCCAGAGATTGACTTTGTTGAGTTTTTCAATAACCATCCAAAGTTGCAAAAGTTTGACATTCATGGAGCCATGTTTGCTGCTCTTTGCCAGAAGAACAGCCTTAAAAATGTAAGTATAATCACTGCCATTTAAGGCAACTTGTTCTTGAAATGGATTTCTTGGCTTATAAATTACGTTCTTTTGGGACTCAGGTGGATCCAGATTTTGTAATCTCGTGTTTGGAGGAAGTATCGGTTTCGGTTAGATCGCCGTTGAATGCCGAACAGAAGATGAATACTCTCGAATCGTTGATAAAGTATGGCAAGAATTTGAAGACCATGGTAATAAAAATTCTTCGAATGAAGAGTAGCCATAGCAGTGCAGATGATTTCTTTGATGAGATTTGCAAGTTTAGATATTGGAATCGCAAGATCGTTCGTATCGAATAAAAGCATAAGTGAGGCACTTTTTTTCTCGTTTTCTAATTTTAATTGATCATTTACCATTTTTATTCTCTGATTACACAGGTTGACCTGC

mRNA sequence

ATGGATTCGCTCCCGGATGCTATTTTTCAGTACGTTTTGTCACATATGAGCAATGCTCGGGATGTGGCAGTCTGCAACTGTGTATCTAAGCGATGGAAATACTCAACACCATACATTAAAAGTCTCTATTTTCCTCGCAATTCCTTCGACAATCATTCAGGTGGGTTGAGTCCCGACATCATCATTTGGAGAATAATATCATCCATTGTTCACTTAGAGGAGCTTGTTGTTTATAGCCCATTTTCTGGTGCTGGTCTTGCTTCATGGCTGTCTAGTGTCGGCCCTTCGCTTCGACGTCTCGAGCTAAGAATGGACAATCTGGTTGATCTTCAGGCTTGTCAAGATAGCCATTCCAAGTTAGAATGCCTTAAATCTGCAGCAAATTTGGAGTCACTTAAATTATGGGGTGTCTTAATGACACATTCACCAAGGTGGGATGTGTTTCAAAAGCTAAGAAACCTTGAGATTGTTGGTGCTAAGTTAGATGATCCTGCTTTGAACACGGCTCTTCGTGCATGTCCTAATCTATCCAACTTATTGCTCCTTGGCTGTGAAGGCCTTACTTCAGTTTCAATTGAACTGAAGCATTTGGAGCAGTGTAAGCTGGATTTCTATGGCTTGGGAAACTGCTCACTCATGATCAATTCTCCTAACATTCAACTCCTTGAAGTTCAAGGCTGTAGCTGGATTAGAGCCTGTGGGACAAGTTCCTTGAGAAGTCTGTCAATATCCAACAATGCAGGAAGAGTTTACATGGTGGATTTTGATCAGCTGGTTTCATTGGAGTCATTGTCCATAAGAGGAGTTCAATGGTGCTGGGATGCAATAAGCAAAATGCTTGAATTAGGGAGTGAGGTGAAGCATCTTTACATGAAAGTTGAGTTCACCGGAGACTTTGATGCACTTGAACCTTTCCCAGAGATTGACTTTGTTGAGTTTTTCAATAACCATCCAAAGTTGCAAAAGTTTGACATTCATGGAGCCATGTTTGCTGCTCTTTGCCAGAAGAACAGCCTTAAAAATGTGGATCCAGATTTTGTAATCTCGTGTTTGGAGGAAGTATCGGTTTCGGTTAGATCGCCGTTGAATGCCGAACAGAAGATGAATACTCTCGAATCGTTGATAAAGTATGGCAAGAATTTGAAGACCATGGTAATAAAAATTCTTCGAATGAAGAGTAGCCATAGCAGTGCAGATGATTTCTTTGATGAGATTTGCAAGTTTAGATATTGGAATCGCAAGATCGTTCGTATCGAATAAAAGCATAAGTGAGGCACTTTTTTTCTCGTTTTCTAATTTTAATTGATCATTTACCATTTTTATTCTCTGATTACACAGGTTGACCTGC

Coding sequence (CDS)

ATGGATTCGCTCCCGGATGCTATTTTTCAGTACGTTTTGTCACATATGAGCAATGCTCGGGATGTGGCAGTCTGCAACTGTGTATCTAAGCGATGGAAATACTCAACACCATACATTAAAAGTCTCTATTTTCCTCGCAATTCCTTCGACAATCATTCAGGTGGGTTGAGTCCCGACATCATCATTTGGAGAATAATATCATCCATTGTTCACTTAGAGGAGCTTGTTGTTTATAGCCCATTTTCTGGTGCTGGTCTTGCTTCATGGCTGTCTAGTGTCGGCCCTTCGCTTCGACGTCTCGAGCTAAGAATGGACAATCTGGTTGATCTTCAGGCTTGTCAAGATAGCCATTCCAAGTTAGAATGCCTTAAATCTGCAGCAAATTTGGAGTCACTTAAATTATGGGGTGTCTTAATGACACATTCACCAAGGTGGGATGTGTTTCAAAAGCTAAGAAACCTTGAGATTGTTGGTGCTAAGTTAGATGATCCTGCTTTGAACACGGCTCTTCGTGCATGTCCTAATCTATCCAACTTATTGCTCCTTGGCTGTGAAGGCCTTACTTCAGTTTCAATTGAACTGAAGCATTTGGAGCAGTGTAAGCTGGATTTCTATGGCTTGGGAAACTGCTCACTCATGATCAATTCTCCTAACATTCAACTCCTTGAAGTTCAAGGCTGTAGCTGGATTAGAGCCTGTGGGACAAGTTCCTTGAGAAGTCTGTCAATATCCAACAATGCAGGAAGAGTTTACATGGTGGATTTTGATCAGCTGGTTTCATTGGAGTCATTGTCCATAAGAGGAGTTCAATGGTGCTGGGATGCAATAAGCAAAATGCTTGAATTAGGGAGTGAGGTGAAGCATCTTTACATGAAAGTTGAGTTCACCGGAGACTTTGATGCACTTGAACCTTTCCCAGAGATTGACTTTGTTGAGTTTTTCAATAACCATCCAAAGTTGCAAAAGTTTGACATTCATGGAGCCATGTTTGCTGCTCTTTGCCAGAAGAACAGCCTTAAAAATGTGGATCCAGATTTTGTAATCTCGTGTTTGGAGGAAGTATCGGTTTCGGTTAGATCGCCGTTGAATGCCGAACAGAAGATGAATACTCTCGAATCGTTGATAAAGTATGGCAAGAATTTGAAGACCATGGTAATAAAAATTCTTCGAATGAAGAGTAGCCATAGCAGTGCAGATGATTTCTTTGATGAGATTTGCAAGTTTAGATATTGGAATCGCAAGATCGTTCGTATCGAATAA

Protein sequence

MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDIIIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKLECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLLLLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRSLSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFDALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRSPLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE

Homology

[Close]

BLAST of CmoCh19G003290.1 vs. ExPASy Swiss-Prot
Match: Q9SAC4 (F-box protein At1g10780 OS=Arabidopsis thaliana OX=3702 GN=At1g10780 PE=2 SV=1)

HSP 1 Score: 559.3 bits (1440), Expect = 3.7e-158
Identity = 276/419 (65.87%), Postives = 332/419 (79.24%), Query Frame = 0


Query: 1   MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAI QY+LS++++ARDVA CNCVSKRWK ST  +KS+ F RNSF++       D 
Sbjct: 1   MDSLPDAILQYILSYLTSARDVAACNCVSKRWKESTDSVKSVVFHRNSFESIMETDDSDS 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           I+ ++ISS   LEELVVYSPF+ +GLASW+  V  SLR LELRMDNL   +   +   KL
Sbjct: 61  IVRKMISSSRRLEELVVYSPFTSSGLASWMMHVSSSLRLLELRMDNLASEEVVVEGPLKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           +C+  A NLE LKLWGVLM   P+WD+F  LR+LEIVGAK+DD +L+ ALRACPNLSNLL
Sbjct: 121 DCIGVAKNLEILKLWGVLMMSPPKWDMFPNLRSLEIVGAKMDDSSLSHALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LL CEG+ S+SI+L +LE CKLDFYG GN  L++ S  +  L+VQGCSWIR   T  L++
Sbjct: 181 LLACEGVKSISIDLPYLEHCKLDFYGQGNTLLVLTSQRLVSLDVQGCSWIRVPETKFLKN 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSIS+  GRVYMVDF+ L SLE+LSIRGVQWCWDAI  +L+   +VKHL+MKVEFTG+ +
Sbjct: 241 LSISSVTGRVYMVDFNNLSSLEALSIRGVQWCWDAICMILQQARDVKHLFMKVEFTGN-E 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           AL+PFPEIDFVEFFNNHPKLQ FDIHGAMFAALCQKNSLK ++  F I CLEEV ++VRS
Sbjct: 301 ALQPFPEIDFVEFFNNHPKLQTFDIHGAMFAALCQKNSLKKLETGFTIPCLEEVVITVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKMNTLESL+KY + LK MVI+ILRMKS+HSSADDF D+ICKFR+ N  +V IE
Sbjct: 361 PLNAEQKMNTLESLVKYARGLKRMVIRILRMKSNHSSADDFCDDICKFRHMNEHLVHIE 418

[Close]

BLAST of CmoCh19G003290.1 vs. ExPASy TrEMBL
Match: A0A6J1HJ43 (F-box protein At1g10780-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464040 PE=4 SV=1)

HSP 1 Score: 855.1 bits (2208), Expect = 1.2e-244
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0


Query: 1   MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI
Sbjct: 22  MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 81

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL
Sbjct: 82  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 141

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL
Sbjct: 142 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 201

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS
Sbjct: 202 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 261

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD
Sbjct: 262 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 321

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS
Sbjct: 322 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 381

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE
Sbjct: 382 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 440

[Close]

BLAST of CmoCh19G003290.1 vs. ExPASy TrEMBL
Match: A0A6J1HLE6 (F-box protein At1g10780-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464040 PE=4 SV=1)

HSP 1 Score: 855.1 bits (2208), Expect = 1.2e-244
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0


Query: 1   MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI
Sbjct: 1   MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL
Sbjct: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL
Sbjct: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS
Sbjct: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD
Sbjct: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS
Sbjct: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE
Sbjct: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 419

[Close]

BLAST of CmoCh19G003290.1 vs. ExPASy TrEMBL
Match: A0A6J1HSM0 (F-box protein At1g10780-like OS=Cucurbita maxima OX=3661 GN=LOC111467046 PE=4 SV=1)

HSP 1 Score: 853.2 bits (2203), Expect = 4.6e-244
Identity = 417/419 (99.52%), Postives = 418/419 (99.76%), Query Frame = 0


Query: 1   MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAIFQY+LSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI
Sbjct: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL
Sbjct: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL
Sbjct: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS
Sbjct: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSISNN GRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD
Sbjct: 241 LSISNNTGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS
Sbjct: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE
Sbjct: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 419

[Close]

BLAST of CmoCh19G003290.1 vs. ExPASy TrEMBL
Match: A0A6J1DL82 (F-box protein At1g10780 OS=Momordica charantia OX=3673 GN=LOC111022152 PE=4 SV=1)

HSP 1 Score: 785.0 bits (2026), Expect = 1.5e-223
Identity = 380/419 (90.69%), Postives = 404/419 (96.42%), Query Frame = 0


Query: 1   MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAI QY+LSHMSNARDVAVCNCVSKRWK STPYI+SLYFPRNSFDNHSGG+SPD 
Sbjct: 1   MDSLPDAIVQYILSHMSNARDVAVCNCVSKRWKDSTPYIRSLYFPRNSFDNHSGGVSPDA 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           +IW+I+SSIVHLEELVVYSPFSGAGL+SWLS+VGPSLRRLELRMDNLVDLQACQ+S SKL
Sbjct: 61  VIWKILSSIVHLEELVVYSPFSGAGLSSWLSTVGPSLRRLELRMDNLVDLQACQESPSKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           EC+K AANLESLKLWGVLMTHSP+WDVF KL+NLEIVGAKL+DPALNTALR CPNLS LL
Sbjct: 121 ECIKCAANLESLKLWGVLMTHSPKWDVFHKLKNLEIVGAKLEDPALNTALRECPNLSKLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LL CEGLTSVSI+LK+LE+CKLDFYGLGNCSLMINSP IQLLEVQGCSWIRA GTSSLRS
Sbjct: 181 LLACEGLTSVSIDLKYLEECKLDFYGLGNCSLMINSPKIQLLEVQGCSWIRAHGTSSLRS 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSI+NNAGRVYMV FD+LVSLESLS+RGVQWCWDAISKMLE GS+VKHLYMKVEFTGDFD
Sbjct: 241 LSIANNAGRVYMVSFDKLVSLESLSLRGVQWCWDAISKMLEWGSQVKHLYMKVEFTGDFD 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSL+NVDPDFVISCLEEVSV VRS
Sbjct: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLQNVDPDFVISCLEEVSVLVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKM+TLESLIKYGKNL+TMVIKIL+MKSSHSSADDFFDEICKFRY NRKIVRIE
Sbjct: 361 PLNAEQKMSTLESLIKYGKNLRTMVIKILKMKSSHSSADDFFDEICKFRYLNRKIVRIE 419

[Close]

BLAST of CmoCh19G003290.1 vs. ExPASy TrEMBL
Match: A0A6J1JKP5 (F-box protein At1g10780-like OS=Cucurbita maxima OX=3661 GN=LOC111486670 PE=4 SV=1)

HSP 1 Score: 770.8 bits (1989), Expect = 3.0e-219
Identity = 378/419 (90.21%), Postives = 398/419 (94.99%), Query Frame = 0


Query: 1   MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAI QY+LSHM+NARDVAVCNCVSKRWK STPYIKSLYFPRNSFD+HSG  SPD+
Sbjct: 1   MDSLPDAIIQYILSHMTNARDVAVCNCVSKRWKDSTPYIKSLYFPRNSFDSHSGESSPDV 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           I+ RI+SSIV LEELVVYSPF+ AGLASWLSS+GPSLRRLELRMDNLVDLQACQDS SKL
Sbjct: 61  IVCRIVSSIVRLEELVVYSPFTSAGLASWLSSIGPSLRRLELRMDNLVDLQACQDSPSKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           E LKSA  LESLKLWGVLMTH+PRWDVFQKL+NLEIVGAK++DPALN+ALRACPNLSNLL
Sbjct: 121 EYLKSAEKLESLKLWGVLMTHTPRWDVFQKLKNLEIVGAKIEDPALNSALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSP +QLLEVQG SWIRA GTSSL S
Sbjct: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPKLQLLEVQGFSWIRARGTSSLTS 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSI+NNAGRVYMVDFD+L SLESLSIRGVQWCWDAISKMLE GSEVKHLYMKVEFTGDFD
Sbjct: 241 LSIANNAGRVYMVDFDKLGSLESLSIRGVQWCWDAISKMLEWGSEVKHLYMKVEFTGDFD 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           ALEPFPEIDFVEFFN+HPKLQKFDIHGAMFAALC KN +KNVDPDFVISCLEEVS+ VRS
Sbjct: 301 ALEPFPEIDFVEFFNHHPKLQKFDIHGAMFAALCPKNCIKNVDPDFVISCLEEVSILVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKMNTLESLIKYGKNLKT+VIKILRMKSSHSSADDFFDEICKFRY NRKIVRIE
Sbjct: 361 PLNAEQKMNTLESLIKYGKNLKTLVIKILRMKSSHSSADDFFDEICKFRYLNRKIVRIE 419

[Close]

BLAST of CmoCh19G003290.1 vs. TAIR 10
Match: AT1G10780.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 559.3 bits (1440), Expect = 2.6e-159
Identity = 276/419 (65.87%), Postives = 332/419 (79.24%), Query Frame = 0


Query: 1   MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAI QY+LS++++ARDVA CNCVSKRWK ST  +KS+ F RNSF++       D 
Sbjct: 1   MDSLPDAILQYILSYLTSARDVAACNCVSKRWKESTDSVKSVVFHRNSFESIMETDDSDS 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           I+ ++ISS   LEELVVYSPF+ +GLASW+  V  SLR LELRMDNL   +   +   KL
Sbjct: 61  IVRKMISSSRRLEELVVYSPFTSSGLASWMMHVSSSLRLLELRMDNLASEEVVVEGPLKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           +C+  A NLE LKLWGVLM   P+WD+F  LR+LEIVGAK+DD +L+ ALRACPNLSNLL
Sbjct: 121 DCIGVAKNLEILKLWGVLMMSPPKWDMFPNLRSLEIVGAKMDDSSLSHALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LL CEG+ S+SI+L +LE CKLDFYG GN  L++ S  +  L+VQGCSWIR   T  L++
Sbjct: 181 LLACEGVKSISIDLPYLEHCKLDFYGQGNTLLVLTSQRLVSLDVQGCSWIRVPETKFLKN 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSIS+  GRVYMVDF+ L SLE+LSIRGVQWCWDAI  +L+   +VKHL+MKVEFTG+ +
Sbjct: 241 LSISSVTGRVYMVDFNNLSSLEALSIRGVQWCWDAICMILQQARDVKHLFMKVEFTGN-E 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           AL+PFPEIDFVEFFNNHPKLQ FDIHGAMFAALCQKNSLK ++  F I CLEEV ++VRS
Sbjct: 301 ALQPFPEIDFVEFFNNHPKLQTFDIHGAMFAALCQKNSLKKLETGFTIPCLEEVVITVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKMNTLESL+KY + LK MVI+ILRMKS+HSSADDF D+ICKFR+ N  +V IE
Sbjct: 361 PLNAEQKMNTLESLVKYARGLKRMVIRILRMKSNHSSADDFCDDICKFRHMNEHLVHIE 418

[Close]

BLAST of CmoCh19G003290.1 vs. TAIR 10
Match: AT5G56390.1 (F-box/RNI-like/FBD-like domains-containing protein )

HSP 1 Score: 44.7 bits (104), Expect = 2.2e-04
Identity = 47/214 (21.96%), Postives = 90/214 (42.06%), Query Frame = 0


Query: 1   MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           +  L D +   +LS + NA+DV     +SKRW+Y    + SL +  +  D   G  S   
Sbjct: 4   ISQLHDELLLGILSLLPNAKDVVATMVLSKRWRYLWMMVPSLVYDDSYQDIDYGRFS--- 63

Query: 61  IIWRIISSIVHLEELVVYSP-------FSGAGLASWLSSVGPSLRRLELRMDNLVDLQAC 120
              R +   + L +  V            G+G     ++    +R+L +++D+     + 
Sbjct: 64  ---RFVDRSLALHKAPVIDTLHFKLGHICGSGDTLIGAAEKCCVRKLIIKIDDTSSRSSK 123

Query: 121 QDSHSKLECLKSAAN--LESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKL-DDPALNTAL 180
            D       L S  +  L  LKL  V++        F  L+ L +   K   +  +N  +
Sbjct: 124 TDQVILPMSLCSGVHIMLADLKLQNVVLVDVSTPVSFPSLKRLRLKSVKYPGNEFVNNLI 183

Query: 181 RACPNLSNLLLLGC--EGLTSVSIELKHLEQCKL 203
            +CP L +L++  C  + +T +++ +  L++  L
Sbjct: 184 SSCPVLEDLVVKQCSDDNVTILTVRVPSLKRLSL 211

The following BLAST results are available for this feature:

BLAST of CmoCh19G003290.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAC4	3.7e-158	65.87	F-box protein At1g10780 OS=Arabidopsis thaliana OX=3702 GN=At1g10780 PE=2 SV=1	[more]

BLAST of CmoCh19G003290.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJ43	1.2e-244	100.00	F-box protein At1g10780-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1HLE6	1.2e-244	100.00	F-box protein At1g10780-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1HSM0	4.6e-244	99.52	F-box protein At1g10780-like OS=Cucurbita maxima OX=3661 GN=LOC111467046 PE=4 SV...	[more]
A0A6J1DL82	1.5e-223	90.69	F-box protein At1g10780 OS=Momordica charantia OX=3673 GN=LOC111022152 PE=4 SV=1	[more]
A0A6J1JKP5	3.0e-219	90.21	F-box protein At1g10780-like OS=Cucurbita maxima OX=3661 GN=LOC111486670 PE=4 SV...	[more]

BLAST of CmoCh19G003290.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10780.1	2.6e-159	65.87	F-box/RNI-like superfamily protein	[more]
AT5G56390.1	2.2e-04	21.96	F-box/RNI-like/FBD-like domains-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 1..295 e-value: 5.7E-14 score: 53.8
None	No IPR available	PANTHER	PTHR32212	CYCLIN-LIKE F-BOX	coord: 1..417
None	No IPR available	PANTHER	PTHR32212:SF248	CYCLIN-LIKE F-BOX	coord: 1..417
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 64..296
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 2..34

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh19G003290	CmoCh19G003290	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G003290.1:exon:6193	CmoCh19G003290.1:exon:6193	exon
CmoCh19G003290.1:exon:6194	CmoCh19G003290.1:exon:6194	exon
CmoCh19G003290.1:exon:6195	CmoCh19G003290.1:exon:6195	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G003290.1:cds	CmoCh19G003290.1:cds	CDS
CmoCh19G003290.1:cds	CmoCh19G003290.1:cds_2	CDS
CmoCh19G003290.1:cds	CmoCh19G003290.1:cds_3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G003290.1:three_prime_utr	CmoCh19G003290.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh19G003290.1	CmoCh19G003290.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding