CmoCh19G003220.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G003220.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	glycine-rich cell wall structural protein 1-like
Location	Cmo_Chr19: 2482387 .. 2483683 (+)
Sequence length	657
RNA-Seq Expression	CmoCh19G003220.1
Synteny	CmoCh19G003220.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGGGATTACTTTGAAAGTTCAAAACAAGGAAAAACTTCCATTGATGATGCCAAAGATGATCTCAAAAGATTATAGTTACTGAAAATGGAATCTAATTCTACATGTATAAGTGTATTAATAATGGGAAAAAAAAAATACATGAGGGTGAAGGAGACATTCTAGCCAATGGGATTTGTAATCTAATTCTACATGTATAAGATTTGTTGTCATCCAATGGAATGAATTTCAAAGGATATATATCTTAATGCTTTGGTACCGAGAAAACTTACACAAATTTTTAAAATTAAGTTAATATTCCTATTTTAATATAGATGACAAAGAAAAGGATTTTCTTGCATTTTGATCTTAGTAAGGTCATTAAAATAATGCTAACAATTACCATAATGTTTATTATTAATATATAACTTAAAGAAGTTACATTGATGTTGTAGTAGTTCATATGATAAGGTTTGAAAACATAAGTTCAAACAATTAAAATTTCAATGTGGAGATAAAGATGGTGGTTTTTCAGTGCAAACTCGTGAAACACTAGTAACACTAGTACTTTGATGGTAGAGGAGGTGAACCAACAAGTGGAACTTTGAGAGGAGCAGTCCCTGGAATACAAGGATGACAATGGTGAAGCAATGGGTGGATTGTTAGGGCGAGGTGGCAAAACTATTGATGGAATGGTTGGACGAGGAGACTAAGCAGTTGATAGAATAAATTGATAAGGGTGTGAAGCCATTGGTGGAATGCTACGGCGAGGTGGTGAAGCTATTGGTGGAATGATTGGACCAGGTGGCGATGCTATCGGTGGAATGATTGGACGAGGTGGTGAAGCCATTGGTGGAATGTTAGGGCGAGGTGGCAAAGTTGGCGAAATGATGGGACGAGGGGGCGAAGCCATTGGTGGACTGCTTGGACGAGGAGGTGATGCTGTCGGTGGAATGATTGGACGAGGTGGTGAGGCCATGGGTGGAATGTTAGGGCGAGGTGGCAAAGTTGGCGAAATGATGGGACGAGGGGGCAAAGCCATTGGTGGACTGCTTGGACGAGGAGGTGATGCTGTCGGTGGAACGATTGGACGAGGTGGTGAGGCCATGGGTGGAATGTTAGGGCGAGGTGGCAAAGTTGGCGAAATTATGGGACGAGGGGGCGAAGCCATTGGTGGAATGCTTGGACGAGGGGGTGATGCTGTCGGTGGAACGATTGGACGAGGTGGTGAGGCCATGGGTGGAATGTTAGGGCGAGGTGGCAAAGTTGGCGAAATGATGGGACGAGGGGGCGAAGCCATTGGTGGAATGCTTGGGTGA

mRNA sequence

GGTGGGATTACTTTGAAAGTTCAAAACAAGGAAAAACTTCCATTGATGATGCCAAAGATGATCTCAAAAGATTATAGGTGTGAAGCCATTGGTGGAATGCTACGGCGAGGTGGTGAAGCTATTGGTGGAATGATTGGACCAGGTGGCGATGCTATCGGTGGAATGATTGGACGAGGTGGTGAAGCCATTGGTGGAATGTTAGGGCGAGGTGGCAAAGTTGGCGAAATGATGGGACGAGGGGGCGAAGCCATTGGTGGACTGCTTGGACGAGGAGGTGATGCTGTCGGTGGAATGATTGGACGAGGTGGTGAGGCCATGGGTGGAATGTTAGGGCGAGGTGGCAAAGTTGGCGAAATGATGGGACGAGGGGGCAAAGCCATTGGTGGACTGCTTGGACGAGGAGGTGATGCTGTCGGTGGAACGATTGGACGAGGTGGTGAGGCCATGGGTGGAATGTTAGGGCGAGGTGGCAAAGTTGGCGAAATTATGGGACGAGGGGGCGAAGCCATTGGTGGAATGCTTGGACGAGGGGGTGATGCTGTCGGTGGAACGATTGGACGAGGTGGTGAGGCCATGGGTGGAATGTTAGGGCGAGGTGGCAAAGTTGGCGAAATGATGGGACGAGGGGGCGAAGCCATTGGTGGAATGCTTGGGTGA

Coding sequence (CDS)

GGTGGGATTACTTTGAAAGTTCAAAACAAGGAAAAACTTCCATTGATGATGCCAAAGATGATCTCAAAAGATTATAGGTGTGAAGCCATTGGTGGAATGCTACGGCGAGGTGGTGAAGCTATTGGTGGAATGATTGGACCAGGTGGCGATGCTATCGGTGGAATGATTGGACGAGGTGGTGAAGCCATTGGTGGAATGTTAGGGCGAGGTGGCAAAGTTGGCGAAATGATGGGACGAGGGGGCGAAGCCATTGGTGGACTGCTTGGACGAGGAGGTGATGCTGTCGGTGGAATGATTGGACGAGGTGGTGAGGCCATGGGTGGAATGTTAGGGCGAGGTGGCAAAGTTGGCGAAATGATGGGACGAGGGGGCAAAGCCATTGGTGGACTGCTTGGACGAGGAGGTGATGCTGTCGGTGGAACGATTGGACGAGGTGGTGAGGCCATGGGTGGAATGTTAGGGCGAGGTGGCAAAGTTGGCGAAATTATGGGACGAGGGGGCGAAGCCATTGGTGGAATGCTTGGACGAGGGGGTGATGCTGTCGGTGGAACGATTGGACGAGGTGGTGAGGCCATGGGTGGAATGTTAGGGCGAGGTGGCAAAGTTGGCGAAATGATGGGACGAGGGGGCGAAGCCATTGGTGGAATGCTTGGGTGA

Protein sequence

GGITLKVQNKEKLPLMMPKMISKDYRCEAIGGMLRRGGEAIGGMIGPGGDAIGGMIGRGGEAIGGMLGRGGKVGEMMGRGGEAIGGLLGRGGDAVGGMIGRGGEAMGGMLGRGGKVGEMMGRGGKAIGGLLGRGGDAVGGTIGRGGEAMGGMLGRGGKVGEIMGRGGEAIGGMLGRGGDAVGGTIGRGGEAMGGMLGRGGKVGEMMGRGGEAIGGMLG

Homology

[Close]

BLAST of CmoCh19G003220.1 vs. ExPASy Swiss-Prot
Match: P09789 (Glycine-rich cell wall structural protein 1 OS=Petunia hybrida OX=4102 GN=GRP-1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-06
Identity = 87/198 (43.94%), Postives = 93/198 (46.97%), Query Frame = 0


Query: 31  GGMLRRGGEAIGGMIGPGGDAIGGMIGRG---GEAIGGMLGRGGKVGEMMGRG-----GE 90
           GG L  GG A GG  G  G   GG +G G   G   GG  G GG VG   G G     G 
Sbjct: 98  GGGLGGGGGAGGGFGGGAGGGAGGGLGGGGGLGGGGGGGAGGGGGVGGGAGSGGGFGAGG 157

Query: 91  AIGGLLGRGG--DAVGGMIGRGGEAMGGMLGRGGKVGEMMGRGGKAIGGLLGRGGDAVGG 150
            +GG  G GG     GG  G GG  +GG  G GG  G   G GG A GGL G  G   GG
Sbjct: 158 GVGGGAGAGGGVGGGGGFGGGGGGGVGGGSGHGGGFGAGGGVGGGAGGGLGGGVGGGGGG 217

Query: 151 TIGRGGEAMGGMLGRGGKVGEIMGRGGEAIGGMLGRGGDAVGGTIGRGGEAMGGMLGRGG 210
             G GG  +GG  G GG  G   G GG   GG  G GG   GG  G GG  +GG  G GG
Sbjct: 218 GSG-GGGGIGGGSGHGGGFGAGGGVGGGVGGGAAGGGGGGGGGG-GGGGGGLGGGSGHGG 277

Query: 211 KVGEMMGRGGEAIGGMLG 219
             G   G GG A GG+ G
Sbjct: 278 GFGAGGGVGGGAAGGVGG 293

[Close]

BLAST of CmoCh19G003220.1 vs. ExPASy Swiss-Prot
Match: P27483 (Glycine-rich cell wall structural protein OS=Arabidopsis thaliana OX=3702 GN=At3g17050 PE=3 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 1.7e-05
Identity = 82/186 (44.09%), Postives = 92/186 (49.46%), Query Frame = 0


Query: 37  GGEAIGGMIGPGGDAIGGMIGRGGEAIGGMLGRGGKVGEMMGRGGEAIGGLLGRGGDAVG 96
           GG+  GG IG GG   GG  G  G  +GG  G GG +G   G GG A GGL   GG A G
Sbjct: 45  GGKGFGGGIGAGGGFGGGAGGGAGGGLGGGAGGGGGIGG--GAGGGAGGGL---GGGAGG 104

Query: 97  GMIGRGGEAMGGMLGRGGKVGEMMGRGGKAIGGLLGRGGDAVGGTIG---RGGEAMGGML 156
           G+ G  G  +GG  G G   G   G GG   GG  G  G  +GG IG    GG   GG L
Sbjct: 105 GLGGGHGGGIGGGAGGGAGGGLGGGHGGGIGGGAGGGSGGGLGGGIGGGAGGGAGGGGGL 164

Query: 157 GRGGKVGEIMGRGGEAIGGMLGRGGDAVGGTIGRG-GEAMGGMLGRGGKVGEMMGRGGEA 216
           G G   G   G GG A GG+ G  G  +GG  G G G  +GG +G GG  G   G GG  
Sbjct: 165 GGGHGGGIGGGAGGGAGGGLGGGHGGGIGGGAGGGSGGGLGGGIG-GGAGGGAGGGGGAG 224

Query: 217 IGGMLG 219
            GG LG
Sbjct: 225 GGGGLG 224

[Close]

BLAST of CmoCh19G003220.1 vs. ExPASy TrEMBL
Match: A0A5D3CNE0 (Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00050 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.0e-45
Identity = 123/197 (62.44%), Postives = 167/197 (84.77%), Query Frame = 0


Query: 28  EAIGGMLRRGGEAIGGMIGPGGDAIGGMIGRGGEAIGGMLGRGG-KVGEMMGRGGEAIGG 87
           EA+G +L R GEA+G ++G GG+A+G MIGRGGEAIG ++GRGG  +GE++GRGGEA+G 
Sbjct: 77  EALGEILGRDGEAMGEILGRGGEALGEMIGRGGEAIGEIIGRGGAAMGEILGRGGEAMGE 136

Query: 88  LLGRGGDAVGGMIGRGGEAMGGMLGRGGK-VGEMMGRGGKAIGGLLGRGGDAVGGTIGRG 147
           +LGRGG+A+G ++GRGGEAMG +LGRGG+ +GE++GRGG+AIG ++GRGG+A+G  +GRG
Sbjct: 137 ILGRGGEAMGEILGRGGEAMGEILGRGGEALGEIIGRGGEAIGEIIGRGGEAMGEILGRG 196

Query: 148 GEAMGGMLGRGGK-VGEIMGRGGEAIGGMLGRGGDAVGGTIGRGGEAMGGMLGRGGK--- 207
           G+AMG +LGRGG+ +GEI+GRGG+ IG + GRGG+A+G   GRGGEAMG +LGRGGK   
Sbjct: 197 GKAMGEILGRGGEAIGEIVGRGGKDIGEIFGRGGEAMGEIFGRGGEAMGEILGRGGKAIA 256

Query: 208 VGEMMGRGGEAIGGMLG 219
           +GE++GRGG+AIG + G
Sbjct: 257 IGEIVGRGGKAIGEIFG 273

[Close]

BLAST of CmoCh19G003220.1 vs. ExPASy TrEMBL
Match: A0A0A0KHS4 (Pollen coat oleosin-glycine rich protein OS=Cucumis sativus OX=3659 GN=Csa_6G416850 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 9.9e-41
Identity = 116/194 (59.79%), Postives = 153/194 (78.87%), Query Frame = 0


Query: 29  AIGGMLRRGGEAIGGMIGPGGDAIGGMIGRGGEAIGGMLGRGGK-VGEMMGRGGEAIGGL 88
           A+G +L RGGE +G  +G GG AIG + GRGG A+G MLGRGG+ +GE MGRGG+AIG +
Sbjct: 139 AMGEILGRGGETLGETMGRGGKAIGEIFGRGGRAMGEMLGRGGETLGETMGRGGKAIGEI 198

Query: 89  LGRGGDAVGGMIGRGGEAMGGMLGRGGK-VGEMMGRGGKAIGGLLGRGGDAVGGTIGRGG 148
            GRGG A+G ++GRGGE +G  +GRGGK +GE+ GRGG+A+G +LGRGG+ +G T+GRGG
Sbjct: 199 FGRGGRAMGEILGRGGETLGETMGRGGKAIGEIFGRGGRAMGEILGRGGETLGETMGRGG 258

Query: 149 EAMGGMLGRGGK-VGEIMGRGGEAIGGMLGRGGDAVGGTIGRGGEAMGGMLGRGGK-VGE 208
           +A+G + GRGG+ +GEI+GRGGE +G  +GRGG A+G   GRGG AMG +LGRGG+ +GE
Sbjct: 259 KAIGEIFGRGGRAMGEILGRGGETLGETMGRGGKAIGEIFGRGGRAMGEILGRGGETLGE 318

Query: 209 MMGRGGEAIGGMLG 219
            MGRGG+AIG + G
Sbjct: 319 TMGRGGKAIGEIFG 332

[Close]

BLAST of CmoCh19G003220.1 vs. ExPASy TrEMBL
Match: A0A1S4DXM4 (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC107991003 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-29
Identity = 102/195 (52.31%), Postives = 141/195 (72.31%), Query Frame = 0


Query: 30  IGGMLRRGGEAIGGMIGPGGDAIGGMIGRGGEAIGGMLGRGGK-VGEMMGRGGEAIGGLL 89
           +G +L RGGEA G +IG GG+A+G ++GRGG+A+G +LGRGG+ +GE++GRGG+ IG + 
Sbjct: 1   MGEILGRGGEATGEIIGRGGEAMGEILGRGGKAMGEILGRGGEAIGEIVGRGGKDIGEIF 60

Query: 90  GRGGDAVGGMIGRGGEAMGGMLGRGGK-VGEMMGRGGKAIGGL----LGRGGDAVGGTIG 149
           GRGG+A+G + GRGGEAMG +LGRGGK +GE++GRGG+AIG +    +GRGG A+G   G
Sbjct: 61  GRGGEAMGEIFGRGGEAMGEILGRGGKAIGEILGRGGEAIGEIFGRGVGRGGKAIGEIFG 120

Query: 150 RGGEAMGGMLGRGGKVGEIMGRGGEAIGGMLGRGGD---AVGGTIGRGGEAMGGMLGRGG 209
           RGG+A+G + GRG  +G ++GRGG+ +GG+ G GG     +GG  GRGG  +GG    G 
Sbjct: 121 RGGDAIGEIFGRGVSIGAMLGRGGKVVGGITGGGGGGGRGIGGGGGRGGIVIGGRRMGGI 180

Query: 210 KVGEMMGRGGEAIGG 216
            +G     GG  IGG
Sbjct: 181 VIGGKGFIGGIVIGG 195

[Close]

BLAST of CmoCh19G003220.1 vs. ExPASy TrEMBL
Match: A0A1I5UY52 (Uncharacterized protein OS=Variovorax sp. 770b2 OX=1566271 GN=SAMN03159339_4995 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.4e-17
Identity = 82/189 (43.39%), Postives = 118/189 (62.43%), Query Frame = 0


Query: 30  IGGMLRRGGEAIGGMIGPGGDAIGGMIGRGGEAIGGMLGRGGKVGEMMGRGGEAIGGLLG 89
           +GG+L   G  +GG++G  G  +GG++G  G  +GG+LG  G VG ++G  G  +GG+LG
Sbjct: 719 VGGLLGGDGGLLGGVLGENG-IVGGLLGGDGGLLGGVLGEDGIVGGLLGGDGGLLGGVLG 778

Query: 90  RGGDAVGGMIGRGGEAMGGMLGRGGKVGEMMGRGGKAIGGLLGRGGDAVGGTIGRGGEAM 149
             G  VGG++G  G  +GG+LG  G VG ++G  G  +GG+LG  G  VGG +G  G  +
Sbjct: 779 ENG-IVGGLLGGDGGLLGGVLGENGIVGGLLGGDGGLLGGVLGENG-IVGGLLGGDGGLL 838

Query: 150 GGMLGRGGKVGEIMGRGGEAIGGMLGRGGDAVGGTIGRGGEAMGGMLGRGGKVGEMMGRG 209
           GG+LG  G VG ++G  G  +GG+LG  G  VGG +G  G  +GG+LG  G VG ++G  
Sbjct: 839 GGVLGENGIVGGLLGGDGGLLGGVLGENG-IVGGLLGGDGGLLGGVLGENGIVGGLLGGD 898

Query: 210 GEAIGGMLG 219
           G  +GG+LG
Sbjct: 899 GGLLGGVLG 903

[Close]

BLAST of CmoCh19G003220.1 vs. ExPASy TrEMBL
Match: A0A384KXK5 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At3g23450 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.2e-16
Identity = 95/189 (50.26%), Postives = 133/189 (70.37%), Query Frame = 0


Query: 30  IGGMLRRGGEAIGGMIGPGGDAIGGMIGRGGEAIGGMLGRGGKVGEMMGRGGEAIGGLLG 89
           +GG + +GG  IGG IG GG  +GG IG+GG  IGG +G+GG +G  +G+GG  IGG +G
Sbjct: 140 VGGGIGKGG-GIGGGIGKGG-GVGGGIGKGG-GIGGGIGKGGGIGGGIGKGG-GIGGGIG 199

Query: 90  RGGDAVGGMIGRGGEAMGGMLGRGGKVGEMMGRGGKAIGGLLGRGGDAVGGTIGRGGEAM 149
           +GG  +GG IG+GG  +GG  G+GG VG  +G+GG  +GG  G+GG  VGG IG+GG  +
Sbjct: 200 KGG-GIGGGIGKGG-GVGGGFGKGGGVGGGIGKGG-GVGGGFGKGG-GVGGGIGKGG-GI 259

Query: 150 GGMLGRGGKVGEIMGRGGEAIGGMLGRGGDAVGGTIGRGGEAMGGMLGRGGKVGEMMGRG 209
           GG +G+GG +G  +G+GG  IGG +G+GG  +GG IG+GG  +GG +G+GG +G  +G+G
Sbjct: 260 GGGIGKGGGIGGGIGKGG-GIGGGIGKGG-GIGGGIGKGG-GIGGGIGKGGGIGGGIGKG 315

Query: 210 GEAIGGMLG 219
           G  IGG +G
Sbjct: 320 G-GIGGGIG 315

[Close]

BLAST of CmoCh19G003220.1 vs. TAIR 10
Match: AT3G23450.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; Has 694543 Blast hits to 47111 proteins in 2535 species: Archae - 1794; Bacteria - 163056; Metazoa - 258989; Fungi - 49151; Plants - 70496; Viruses - 8919; Other Eukaryotes - 142138 (source: NCBI BLink). )

HSP 1 Score: 95.9 bits (237), Expect = 4.3e-20
Identity = 95/189 (50.26%), Postives = 133/189 (70.37%), Query Frame = 0


Query: 30  IGGMLRRGGEAIGGMIGPGGDAIGGMIGRGGEAIGGMLGRGGKVGEMMGRGGEAIGGLLG 89
           +GG + +GG  IGG IG GG  +GG IG+GG  IGG +G+GG +G  +G+GG  IGG +G
Sbjct: 140 VGGGIGKGG-GIGGGIGKGG-GVGGGIGKGG-GIGGGIGKGGGIGGGIGKGG-GIGGGIG 199

Query: 90  RGGDAVGGMIGRGGEAMGGMLGRGGKVGEMMGRGGKAIGGLLGRGGDAVGGTIGRGGEAM 149
           +GG  +GG IG+GG  +GG  G+GG VG  +G+GG  +GG  G+GG  VGG IG+GG  +
Sbjct: 200 KGG-GIGGGIGKGG-GVGGGFGKGGGVGGGIGKGG-GVGGGFGKGG-GVGGGIGKGG-GI 259

Query: 150 GGMLGRGGKVGEIMGRGGEAIGGMLGRGGDAVGGTIGRGGEAMGGMLGRGGKVGEMMGRG 209
           GG +G+GG +G  +G+GG  IGG +G+GG  +GG IG+GG  +GG +G+GG +G  +G+G
Sbjct: 260 GGGIGKGGGIGGGIGKGG-GIGGGIGKGG-GIGGGIGKGG-GIGGGIGKGGGIGGGIGKG 315

Query: 210 GEAIGGMLG 219
           G  IGG +G
Sbjct: 320 G-GIGGGIG 315

[Close]

BLAST of CmoCh19G003220.1 vs. TAIR 10
Match: AT4G01985.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-08
Identity = 84/200 (42.00%), Postives = 104/200 (52.00%), Query Frame = 0


Query: 30  IGGMLRRGGEAIGGMIGPG---GDAIGGMIGRGGEAIGGMLGRGGKVGEMMGRGGEAIGG 89
           +GG +  GG A GG +G G   G   GG +G GG   GG  G GG VG   GRG     G
Sbjct: 175 VGGGVGAGGGA-GGSVGAGGGIGSGGGGTVGAGGRGSGGASGGGGTVG-AGGRGSGGASG 234

Query: 90  LLGRGGDA---VGGMIGRGGEAMGGMLGRGGKVGEMMGRGGKAIGGLLGRGGDAVGGTIG 149
            +G GG A    GG +G GG   GG +G  G  G  +G GG   GG+ G  G  VGG++G
Sbjct: 235 GVGVGGGAGGSGGGSVGGGGRGSGG-VGASGGAGGNVGAGGGLGGGVGGGVGGGVGGSVG 294

Query: 150 RG-GEAMGGMLGRGGKVGEIMGRG---GEAIGGMLGRGGDAVGGTIGRGGEAMGGMLGRG 209
              G A+GG +G GG  G + G G   G A GG  G      GG++G GG   GG+   G
Sbjct: 295 GAVGGAVGGAVGGGGG-GSVGGGGRGSGGASGGASGGASGGAGGSVGAGGGVGGGV---G 354

Query: 210 GKVGEMMGRG-GEAIGGMLG 219
           G VG  +G G G A+GG +G
Sbjct: 355 GGVGGGVGGGVGGAVGGAVG 367

[Close]

BLAST of CmoCh19G003220.1 vs. TAIR 10
Match: AT1G04660.1 (glycine-rich protein )

HSP 1 Score: 42.0 bits (97), Expect = 7.3e-04
Identity = 73/160 (45.62%), Postives = 93/160 (58.13%), Query Frame = 0


Query: 39  EAIGGMIGPGGDA-IGGMIGRGGEAIGGMLGRGGKVGEMMGRGGEA-IGGLLGRGGDAVG 98
           + IGG+ G GG A +GG+ G GG  +  + G GG +G+  G GG A IGG    GG  VG
Sbjct: 61  KCIGGVAGVGGFAGVGGVAGVGGLGMPLIGGLGG-IGKYGGIGGAAGIGGFHSIGG--VG 120

Query: 99  GMIGRGGEAMGGMLGRGGKVGEMMGRGGKAIGGLLGRGGDAVGGTIGRGGEAMGGMLGRG 158
           G+ G GG  +GG+ G GG VG + G GG    GL G GG  VGG IG+ G  +GG+ G G
Sbjct: 121 GLGGVGG-GVGGLGGVGGGVGGLGGVGGLGGAGLGGVGG--VGGGIGKAG-GIGGLGGLG 180

Query: 159 GKVGEIMGRGGEAIGGMLGRGGDAVGGTIGRGGEAMGGML 197
           G  G   G GG  +GG+   GG  VGG IG G   +GG++
Sbjct: 181 GAGG---GLGG--VGGLGKAGGIGVGGGIGGGHGVVGGVI 208

The following BLAST results are available for this feature:

BLAST of CmoCh19G003220.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P09789	1.5e-06	43.94	Glycine-rich cell wall structural protein 1 OS=Petunia hybrida OX=4102 GN=GRP-1 ...	[more]
P27483	1.7e-05	44.09	Glycine-rich cell wall structural protein OS=Arabidopsis thaliana OX=3702 GN=At3...	[more]

BLAST of CmoCh19G003220.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CNE0	3.0e-45	62.44	Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa O...	[more]
A0A0A0KHS4	9.9e-41	59.79	Pollen coat oleosin-glycine rich protein OS=Cucumis sativus OX=3659 GN=Csa_6G416...	[more]
A0A1S4DXM4	1.8e-29	52.31	glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1I5UY52	3.4e-17	43.39	Uncharacterized protein OS=Variovorax sp. 770b2 OX=1566271 GN=SAMN03159339_4995 ...	[more]
A0A384KXK5	2.2e-16	50.26	Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At3g23450 PE=4 SV=1	[more]

BLAST of CmoCh19G003220.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23450.1	4.3e-20	50.26	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G01985.1	3.7e-08	42.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G04660.1	7.3e-04	45.63	glycine-rich protein	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh19G003220	CmoCh19G003220	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G003220.1:exon:6306	CmoCh19G003220.1:exon:6306	exon
CmoCh19G003220.1:exon:6305	CmoCh19G003220.1:exon:6305	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G003220.1:cds	CmoCh19G003220.1:cds	CDS
CmoCh19G003220.1:cds	CmoCh19G003220.1:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh19G003220.1	CmoCh19G003220.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043069	negative regulation of programmed cell death
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003729	mRNA binding