CmoCh19G001400.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G001400.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionWD repeat-containing protein 26
LocationCmo_Chr19: 795798 .. 796505 (-)
Sequence length708
RNA-Seq ExpressionCmoCh19G001400.1
SyntenyCmoCh19G001400.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGTTCATCTGTGTTAATTGGATCCAAGGGCCTAATAAGGAAACATGAGTTTGTTAGGATCATAATTCAATGCTTATATTCATTTGGTTACCAAAAATCTGCACTAAGTTTGGAATCCGAGTCTGGAATTTCATACAAATCTAATGATTTCAAGTTGTTGGAGTCTCAAATTTTCAGTGGTAATTGGTATGGTTGCATTGACACAATAAGTGGCATCAAGGATTTAACTGATGAAGTAAGAGTTTCCGCCCTGTTTCTTGTTCTAAAACATTGTTTGCTTGAGTATTCTAACTGTGGGGATGATGCATCGGCACTAGCTATGTTGCGTAAAGAAGCTCCAATGTTCCATTTTAGTAGAGACAAAATCCACAAGCTTGCTTACAGCATATTTACTTCTAAGAACATGAATTTGGATTATTCAAATGACAGTGTCATTCATGAATTAAGGAAAAAGTTATTGCGAGATTTGGAAAAAGCTCTTCCTCCACCTACTTGTTTGCCAGACAGGAGGTTGGAGCAACTGGTTGAAACCACCGTAGTGGCACAGATTGATTCATGTATGTATCATAATTTTTCAGGTGCAGTTTCAATCTATGAGGACCACTGCTGTGGCAGGGATCAAATACCAACAGAAACAATTCAGGTGCATTTTATTATGCTCGTATTCCATGTTTATACTCTTAATTTCCATGCATCATTTTAG

mRNA sequence

ATGGAGAGTTCATCTGTGTTAATTGGATCCAAGGGCCTAATAAGGAAACATGAGTTTGTTAGGATCATAATTCAATGCTTATATTCATTTGGTTACCAAAAATCTGCACTAAGTTTGGAATCCGAGTCTGGAATTTCATACAAATCTAATGATTTCAAGTTGTTGGAGTCTCAAATTTTCAGTGGTAATTGGTATGGTTGCATTGACACAATAAGTGGCATCAAGGATTTAACTGATGAAGTAAGAGTTTCCGCCCTGTTTCTTGTTCTAAAACATTGTTTGCTTGAGTATTCTAACTGTGGGGATGATGCATCGGCACTAGCTATGTTGCGTAAAGAAGCTCCAATGTTCCATTTTAGTAGAGACAAAATCCACAAGCTTGCTTACAGCATATTTACTTCTAAGAACATGAATTTGGATTATTCAAATGACAGTGTCATTCATGAATTAAGGAAAAAGTTATTGCGAGATTTGGAAAAAGCTCTTCCTCCACCTACTTGTTTGCCAGACAGGAGGTTGGAGCAACTGGTTGAAACCACCGTAGTGGCACAGATTGATTCATGTATGTATCATAATTTTTCAGGTGCAGTTTCAATCTATGAGGACCACTGCTGTGGCAGGGATCAAATACCAACAGAAACAATTCAGGTGCATTTTATTATGCTCGTATTCCATGTTTATACTCTTAATTTCCATGCATCATTTTAG

Coding sequence (CDS)

ATGGAGAGTTCATCTGTGTTAATTGGATCCAAGGGCCTAATAAGGAAACATGAGTTTGTTAGGATCATAATTCAATGCTTATATTCATTTGGTTACCAAAAATCTGCACTAAGTTTGGAATCCGAGTCTGGAATTTCATACAAATCTAATGATTTCAAGTTGTTGGAGTCTCAAATTTTCAGTGGTAATTGGTATGGTTGCATTGACACAATAAGTGGCATCAAGGATTTAACTGATGAAGTAAGAGTTTCCGCCCTGTTTCTTGTTCTAAAACATTGTTTGCTTGAGTATTCTAACTGTGGGGATGATGCATCGGCACTAGCTATGTTGCGTAAAGAAGCTCCAATGTTCCATTTTAGTAGAGACAAAATCCACAAGCTTGCTTACAGCATATTTACTTCTAAGAACATGAATTTGGATTATTCAAATGACAGTGTCATTCATGAATTAAGGAAAAAGTTATTGCGAGATTTGGAAAAAGCTCTTCCTCCACCTACTTGTTTGCCAGACAGGAGGTTGGAGCAACTGGTTGAAACCACCGTAGTGGCACAGATTGATTCATGTATGTATCATAATTTTTCAGGTGCAGTTTCAATCTATGAGGACCACTGCTGTGGCAGGGATCAAATACCAACAGAAACAATTCAGGTGCATTTTATTATGCTCGTATTCCATGTTTATACTCTTAATTTCCATGCATCATTTTAG

Protein sequence

MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQVHFIMLVFHVYTLNFHASF
Homology
BLAST of CmoCh19G001400.1 vs. ExPASy Swiss-Prot
Match: Q9FND4 (WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.2e-60
Identity = 112/212 (52.83%), Postives = 154/212 (72.64%), Query Frame = 0

Query: 7   LIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYG 66
           ++GSKGL++KHEF+RI++QCLYS G++ SA  LE ES I YK+ D + LE Q+ SGNW  
Sbjct: 8   VLGSKGLLKKHEFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDS 67

Query: 67  CIDTISGIKDLT-DEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIH 126
           C+  +  I D + D+ R +AL+LV K CLLEY   GD + AL +LRK+AP+    ++KIH
Sbjct: 68  CVQVLDRIFDNSMDDTRNTALYLVFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIH 127

Query: 127 KLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQI 186
           +LA  I  SK M     ++ ++ +LR+KLL +LEK +P P  +P+RRLE LVET V+ QI
Sbjct: 128 RLACDIVYSKEMESGEVDNCLVLDLRRKLLVELEKLIPLPIVIPERRLEHLVETAVMDQI 187

Query: 187 DSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV 218
           D+CMYHN   AVS+Y+DHCCGRDQIP+ET+Q+
Sbjct: 188 DTCMYHNSCDAVSLYKDHCCGRDQIPSETVQI 219

BLAST of CmoCh19G001400.1 vs. ExPASy Swiss-Prot
Match: Q9FNN2 (WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.0e-33
Identity = 81/214 (37.85%), Postives = 122/214 (57.01%), Query Frame = 0

Query: 8   IGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYGC 67
           IGSKG+IRK EFVRII + LYS GY K+   LE ESGIS  ++  KL   Q+  G W   
Sbjct: 57  IGSKGVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQS 116

Query: 68  IDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIHKL 127
           + T+  I    ++   +A FL+L+   LE+      A AL  LR E      +  ++H+L
Sbjct: 117 VKTLHRIGFPDEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHEL 176

Query: 128 AYSIFTSKNMNLDYSNDSVIHE---LRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQ 187
           A S+ +  +  + ++  +   E    R K+L +L+  LP    +P++RLE LVE ++  Q
Sbjct: 177 ASSLISPSSF-ISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEKRLECLVENSLHIQ 236

Query: 188 IDSCMYHN-FSGAVSIYEDHCCGRDQIPTETIQV 218
            DSC++HN     +S+Y DH CG+ QIP++T Q+
Sbjct: 237 RDSCVFHNTLDSDLSLYSDHQCGKHQIPSQTAQI 269

BLAST of CmoCh19G001400.1 vs. ExPASy Swiss-Prot
Match: P0DPA1 (WD repeat-containing protein DDB_G0349043 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0349043 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.7e-20
Identity = 63/201 (31.34%), Postives = 99/201 (49.25%), Query Frame = 0

Query: 16  KHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYGCIDTISGIK 75
           + E VR++IQ L S GY KSA  LE +SGIS +S +       + SG+W    + +  +K
Sbjct: 41  RSELVRLLIQSLNSLGYDKSAEFLEKDSGISLQSKEINQFSECVVSGDWNKVEELLPFLK 100

Query: 76  DLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIHKLAYSIFTSK 135
            L +    +  FLV     LEY        AL  LR E   +     ++  L   I TS 
Sbjct: 101 -LNEFDTNNVKFLVYSQKFLEYLENHKIKEALECLRLEITPYTKDTSRLQVLTSLIMTSN 160

Query: 136 NMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQIDSCMYHNFSG 195
           +   +          R  LL D+ K + P   LP+ RLEQL++ ++  Q+  C+YHN S 
Sbjct: 161 SS--ETKKQIKQRSSRVNLLDDIRKYVNPNIMLPENRLEQLIKQSIQYQMGKCLYHNTSE 220

Query: 196 A-VSIYEDHCCGRDQIPTETI 216
             +++++DH C + Q+P + +
Sbjct: 221 QFINLFKDHTCDKSQMPLDVL 238

BLAST of CmoCh19G001400.1 vs. ExPASy Swiss-Prot
Match: Q7K0L4 (WD repeat-containing protein 26 homolog OS=Drosophila melanogaster OX=7227 GN=CG7611 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-14
Identity = 54/213 (25.35%), Postives = 97/213 (45.54%), Query Frame = 0

Query: 18  EFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYGCIDTISGIKDL 77
           E +R+I Q L+  G  KS  +L  ESG   +          +  G+W      +  ++ L
Sbjct: 99  EIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLEPL 158

Query: 78  TDEVRVSAL----FLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIHKLAYSIFT 137
            D  +++ +    F++L+   LE+ + G+   AL +LR E      +  ++H+L+  +  
Sbjct: 159 IDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQHNITRVHQLSSYMMC 218

Query: 138 SKNMNL----DYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQIDSCM 197
           S N +L     +    ++   R  ++  L+  +PP   +  RRL  L++  V  Q   C 
Sbjct: 219 STNQDLYQRAKWEGKGILS--RALVMERLQTFMPPSVMMSPRRLRTLLQQAVELQSQHCP 278

Query: 198 YHNFS-----GAVSIYEDHCCGRDQIPTETIQV 218
            H+ +       VS+  DHCC  D  P +TIQ+
Sbjct: 279 CHDMAWETNLETVSLLTDHCCTTDGFPMQTIQI 309

BLAST of CmoCh19G001400.1 vs. ExPASy Swiss-Prot
Match: Q9UT85 (Uncharacterized WD repeat-containing protein C343.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC343.04c PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.3e-14
Identity = 51/200 (25.50%), Postives = 93/200 (46.50%), Query Frame = 0

Query: 18  EFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYGCIDTISGIKDL 77
           E + +++Q L  +GY +S  +LE E+G+  ++ D K L+  +  G+W       S ++  
Sbjct: 10  EVIHLLLQFLNDYGYDESLKALEKETGLVSETEDVKRLKQAVLQGDWITAEAAFSIMQLR 69

Query: 78  TDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIHKLAYSIFTSKNM 137
            +  R  A FL+ K   LE +  G    A+ +L +      F+++K   ++  + ++   
Sbjct: 70  DESKRKEAQFLLQKQRCLELARSGAICEAIYVL-QNFESTDFNKEKERLVSIILESNNKS 129

Query: 138 NLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQIDSCMYHNFSGAV 197
           N +    +     R  LL  L + + P   LP RRLE L++     Q+ S +YHN     
Sbjct: 130 NNELITKNGYGNTRLDLLNQLSEYISPEILLPKRRLEHLLQQAKDYQVSSQVYHNVLKNF 189

Query: 198 SIYEDHCCGRDQIPTETIQV 218
           S   D+     ++PT+   V
Sbjct: 190 SFLSDYKADPSELPTKEYHV 208

BLAST of CmoCh19G001400.1 vs. ExPASy TrEMBL
Match: A0A6J1HGL5 (WD repeat-containing protein WDS homolog OS=Cucurbita moschata OX=3662 GN=LOC111463906 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 8.8e-120
Identity = 216/217 (99.54%), Postives = 217/217 (100.00%), Query Frame = 0

Query: 1   MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIF 60
           MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIF
Sbjct: 1   MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIF 60

Query: 61  SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFS 120
           SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFS
Sbjct: 61  SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFS 120

Query: 121 RDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT 180
           RDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT
Sbjct: 121 RDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT 180

Query: 181 VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV 218
           VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQ+
Sbjct: 181 VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQI 217

BLAST of CmoCh19G001400.1 vs. ExPASy TrEMBL
Match: A0A6J1HQA0 (WD repeat-containing protein WDS homolog OS=Cucurbita maxima OX=3661 GN=LOC111466830 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.1e-117
Identity = 212/217 (97.70%), Postives = 215/217 (99.08%), Query Frame = 0

Query: 1   MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIF 60
           MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSAL LE+ESGISYKSNDFKLLESQIF
Sbjct: 1   MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALCLEAESGISYKSNDFKLLESQIF 60

Query: 61  SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFS 120
           SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMF FS
Sbjct: 61  SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFRFS 120

Query: 121 RDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT 180
           RDKIHKLAYSIFTSKNMN+DYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT
Sbjct: 121 RDKIHKLAYSIFTSKNMNMDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT 180

Query: 181 VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV 218
           VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQ+
Sbjct: 181 VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQI 217

BLAST of CmoCh19G001400.1 vs. ExPASy TrEMBL
Match: A0A0A0L8N6 (LisH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G611890 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 3.1e-117
Identity = 209/232 (90.09%), Postives = 224/232 (96.55%), Query Frame = 0

Query: 1   MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIF 60
           MESSSVL+GSKGLIRKHEFVR+IIQCLYSFGYQKSAL LE+ESGISYKS+DFKLLESQIF
Sbjct: 1   MESSSVLLGSKGLIRKHEFVRVIIQCLYSFGYQKSALCLEAESGISYKSSDFKLLESQIF 60

Query: 61  SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFS 120
           SGNWYGCIDTI+GIK LTD+VRVS LFLVLKHCLLEYSNCGDDASALAMLRKEAP+FHFS
Sbjct: 61  SGNWYGCIDTINGIKGLTDDVRVSTLFLVLKHCLLEYSNCGDDASALAMLRKEAPIFHFS 120

Query: 121 RDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT 180
           +DKIHKLAYSIFTSK+MNLDYSND+VIHELRKKLLRDLEK LPPPTCLPDRRLEQLVETT
Sbjct: 121 KDKIHKLAYSIFTSKDMNLDYSNDNVIHELRKKLLRDLEKTLPPPTCLPDRRLEQLVETT 180

Query: 181 VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQVHFIMLVFHVYTLNFH 233
           V+AQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQVHFIML+  ++  +FH
Sbjct: 181 VMAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQVHFIMLI-SLFVFSFH 231

BLAST of CmoCh19G001400.1 vs. ExPASy TrEMBL
Match: A0A5D3D618 (WD repeat-containing protein 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold154G00330 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 6.5e-115
Identity = 204/223 (91.48%), Postives = 218/223 (97.76%), Query Frame = 0

Query: 1   MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIF 60
           MESS+VL+GSKGLIRKHEFVR+IIQCLYSFGYQKSAL LE+ESGISYKS+DFKLLESQIF
Sbjct: 1   MESSAVLLGSKGLIRKHEFVRVIIQCLYSFGYQKSALCLEAESGISYKSSDFKLLESQIF 60

Query: 61  SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFS 120
           SGNWYGCIDTI+GIK LTD+VRVS LFLVLKHCLLEYSNCGDDASALAMLRKEAP+FHFS
Sbjct: 61  SGNWYGCIDTINGIKGLTDDVRVSTLFLVLKHCLLEYSNCGDDASALAMLRKEAPIFHFS 120

Query: 121 RDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT 180
           +DKIHKLAYSIFTSK+MNLD SND+VIHELRKKLLRDLEK LPPPTCLPDRRLEQLVETT
Sbjct: 121 KDKIHKLAYSIFTSKDMNLDCSNDNVIHELRKKLLRDLEKTLPPPTCLPDRRLEQLVETT 180

Query: 181 VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQVHFIMLV 224
           V+AQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQVHFI+L+
Sbjct: 181 VMAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQVHFIILI 223

BLAST of CmoCh19G001400.1 vs. ExPASy TrEMBL
Match: A0A1S3BGP5 (LOW QUALITY PROTEIN: WD repeat-containing protein 26 OS=Cucumis melo OX=3656 GN=LOC103489827 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 4.0e-112
Identity = 200/217 (92.17%), Postives = 212/217 (97.70%), Query Frame = 0

Query: 1   MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIF 60
           MESS+VL+GSKGLIRKHEFVR+IIQCLYSFGYQKSAL LE+ESGISYKS+DFKLLESQIF
Sbjct: 1   MESSAVLLGSKGLIRKHEFVRVIIQCLYSFGYQKSALCLEAESGISYKSSDFKLLESQIF 60

Query: 61  SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFS 120
           SGNWYGCIDTI+GIK LTD+VRVS LFLVLKHCLLEYSNCGDDASALAMLRKEAP+FHFS
Sbjct: 61  SGNWYGCIDTINGIKGLTDDVRVSTLFLVLKHCLLEYSNCGDDASALAMLRKEAPIFHFS 120

Query: 121 RDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT 180
           +DKIHKLAYSIFTSK+MNLD SND+VIHELRKKLLRDLEK LPPPTCLPDRRLEQLVETT
Sbjct: 121 KDKIHKLAYSIFTSKDMNLDCSNDNVIHELRKKLLRDLEKTLPPPTCLPDRRLEQLVETT 180

Query: 181 VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV 218
           V+AQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV
Sbjct: 181 VMAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV 217

BLAST of CmoCh19G001400.1 vs. TAIR 10
Match: AT5G43920.1 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 234.6 bits (597), Expect = 8.3e-62
Identity = 112/212 (52.83%), Postives = 154/212 (72.64%), Query Frame = 0

Query: 7   LIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYG 66
           ++GSKGL++KHEF+RI++QCLYS G++ SA  LE ES I YK+ D + LE Q+ SGNW  
Sbjct: 8   VLGSKGLLKKHEFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDS 67

Query: 67  CIDTISGIKDLT-DEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIH 126
           C+  +  I D + D+ R +AL+LV K CLLEY   GD + AL +LRK+AP+    ++KIH
Sbjct: 68  CVQVLDRIFDNSMDDTRNTALYLVFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIH 127

Query: 127 KLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQI 186
           +LA  I  SK M     ++ ++ +LR+KLL +LEK +P P  +P+RRLE LVET V+ QI
Sbjct: 128 RLACDIVYSKEMESGEVDNCLVLDLRRKLLVELEKLIPLPIVIPERRLEHLVETAVMDQI 187

Query: 187 DSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV 218
           D+CMYHN   AVS+Y+DHCCGRDQIP+ET+Q+
Sbjct: 188 DTCMYHNSCDAVSLYKDHCCGRDQIPSETVQI 219

BLAST of CmoCh19G001400.1 vs. TAIR 10
Match: AT5G08560.1 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 142.5 bits (358), Expect = 4.3e-34
Identity = 81/214 (37.85%), Postives = 122/214 (57.01%), Query Frame = 0

Query: 8   IGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYGC 67
           IGSKG+IRK EFVRII + LYS GY K+   LE ESGIS  ++  KL   Q+  G W   
Sbjct: 57  IGSKGVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQS 116

Query: 68  IDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIHKL 127
           + T+  I    ++   +A FL+L+   LE+      A AL  LR E      +  ++H+L
Sbjct: 117 VKTLHRIGFPDEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHEL 176

Query: 128 AYSIFTSKNMNLDYSNDSVIHE---LRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQ 187
           A S+ +  +  + ++  +   E    R K+L +L+  LP    +P++RLE LVE ++  Q
Sbjct: 177 ASSLISPSSF-ISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEKRLECLVENSLHIQ 236

Query: 188 IDSCMYHN-FSGAVSIYEDHCCGRDQIPTETIQV 218
            DSC++HN     +S+Y DH CG+ QIP++T Q+
Sbjct: 237 RDSCVFHNTLDSDLSLYSDHQCGKHQIPSQTAQI 269

BLAST of CmoCh19G001400.1 vs. TAIR 10
Match: AT5G08560.2 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 142.5 bits (358), Expect = 4.3e-34
Identity = 81/214 (37.85%), Postives = 122/214 (57.01%), Query Frame = 0

Query: 8   IGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYGC 67
           IGSKG+IRK EFVRII + LYS GY K+   LE ESGIS  ++  KL   Q+  G W   
Sbjct: 57  IGSKGVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQS 116

Query: 68  IDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIHKL 127
           + T+  I    ++   +A FL+L+   LE+      A AL  LR E      +  ++H+L
Sbjct: 117 VKTLHRIGFPDEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHEL 176

Query: 128 AYSIFTSKNMNLDYSNDSVIHE---LRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQ 187
           A S+ +  +  + ++  +   E    R K+L +L+  LP    +P++RLE LVE ++  Q
Sbjct: 177 ASSLISPSSF-ISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEKRLECLVENSLHIQ 236

Query: 188 IDSCMYHN-FSGAVSIYEDHCCGRDQIPTETIQV 218
            DSC++HN     +S+Y DH CG+ QIP++T Q+
Sbjct: 237 RDSCVFHNTLDSDLSLYSDHQCGKHQIPSQTAQI 269

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FND41.2e-6052.83WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS ... [more]
Q9FNN26.0e-3337.85WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26... [more]
P0DPA17.7e-2031.34WD repeat-containing protein DDB_G0349043 OS=Dictyostelium discoideum OX=44689 G... [more]
Q7K0L41.3e-1425.35WD repeat-containing protein 26 homolog OS=Drosophila melanogaster OX=7227 GN=CG... [more]
Q9UT856.3e-1425.50Uncharacterized WD repeat-containing protein C343.04c OS=Schizosaccharomyces pom... [more]
Match NameE-valueIdentityDescription
A0A6J1HGL58.8e-12099.54WD repeat-containing protein WDS homolog OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1HQA01.1e-11797.70WD repeat-containing protein WDS homolog OS=Cucurbita maxima OX=3661 GN=LOC11146... [more]
A0A0A0L8N63.1e-11790.09LisH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G611890 PE=4 S... [more]
A0A5D3D6186.5e-11591.48WD repeat-containing protein 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A1S3BGP54.0e-11292.17LOW QUALITY PROTEIN: WD repeat-containing protein 26 OS=Cucumis melo OX=3656 GN=... [more]
Match NameE-valueIdentityDescription
AT5G43920.18.3e-6252.83transducin family protein / WD-40 repeat family protein [more]
AT5G08560.14.3e-3437.85transducin family protein / WD-40 repeat family protein [more]
AT5G08560.24.3e-3437.85transducin family protein / WD-40 repeat family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006594LIS1 homology motifSMARTSM00667Lishcoord: 15..47
e-value: 0.0027
score: 27.0
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 15..47
score: 9.308761
NoneNo IPR availablePANTHERPTHR22838:SF0WD REPEAT-CONTAINING PROTEIN 26coord: 9..217
NoneNo IPR availablePANTHERPTHR22838WD REPEAT PROTEIN 26-RELATEDcoord: 9..217

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh19G001400CmoCh19G001400gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G001400.1:exon:6679CmoCh19G001400.1:exon:6679exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G001400.1:cdsCmoCh19G001400.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh19G001400.1CmoCh19G001400.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding