CmoCh18G013520.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G013520.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RNA-binding KH domain-containing protein RCF3-like
Location	Cmo_Chr18: 12759697 .. 12764784 (-)
Sequence length	2306
RNA-Seq Expression	CmoCh18G013520.1
Synteny	CmoCh18G013520.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGGGATTGAAGCAACGGAATTGAAGCAACGGAATTGAAGCAACGGAATTGAAGCAACGGAGTGAGTTCTGAGTTCTGAGTTTTTATTTTGTTTCTGTTCTTTTTGGACCCGAGGAATCTAATCTACTTATGAGTTAGAGATTTTGGACCCTTTTACTCCAGAAGATAAGATTGTAACAAAACTGGAAAATCAAAGCCAATGACATCGAATTTCTGTGACTCTAATGGCTTCGCATTGAAATCAACTAAACCGGGGTAACCATTATTTAACATTTGAGATGGAGAAGTCTAGATCTAAGAGAAACTACTACTATGACCACCAAGACTATGATTCCGAAGCGATGGGTAGAACCAGACCACGTTACAACAATCACTACGCCAGTAATAACTATCGTCACCGTGGCAGTGCAATTCGACCGTCTAAACCTCAAGACCAACCTCTTATGGTGACCACAACTTACAGGATACTCTGTCATGACGCCAAAGCCGGGGGTGTCATCGGAAAATCTGGTAGTATCATTAAGTCCATAAGGCAGCACACCGGTGCGTGGATCAACGTGCATGAGCTTGTTCCGGGCGATGAGGAGAGAATAATTGAGATATCGGACACTCGGCGGCGGGACCCCGAAGGTCGGATGTCGTCGTTCTCTCCCGCGCAGGAAGCACTTTTCTTGATTCATGAAAGGATTCTCGAGAGTGAAATGAGTCCTGGGTTTAATGGAATGGGGTATGGTGCTGAGGATGAGGAGGATGATTACGGCGAGGTTAGAGGAGGAGCTGGTGGTGGCAATAGCCGTGTGGCCACAAGGCTTGTGGTGTCTAGAATGCACGTAGGTTGTTTGCTAGGGAAGGGAGGAAAGATAATCGAGCAAATGAGAATGGAAACCAAGACTCAGATAAGGGTTCTACCTAGAGATCACAATTTGCCTAGCTGCATTACAATGTCAGAGGAGATCGTTCAGGTTTAGTTTCTGAACACTTCAGTATCTCGAAAGAGTACCCTATTTCTTGTTGCTATGGTAATCTAAAAAAATATTATACTCATACTGAATCAGGTTTAAAGGAAGCCAATTTACTTTTGCAATGCTTAACGGAAGTTGCTAATTGGGTTCTTAGGACATGTTAGAACGTTAAAAGAGGCAGTAATAAAATGGCGTCTATAAGCAGCTTAGTAATGCAGTGACAGGTTTTTTGAATCTGCTACTGTCCTGTCTTTGCTTCACTAGCTATTTGAGAAACTAATAGAGTTCGACCAGAAATCATTTGTTTTCTGAAACCATCAAATTTGTTTCTTACTGCGCATTTTATTCAATCTGTGAGTTTACAAAAGCTAGTCATATTGGCAGAAACGTTTATGTGGGAACGTCACATATATCTTGCATATTACATTGTTTTGCCTTTTCATATGTTGATTCCTGCGTCGATTGTTGAACTAACTTATTCAACCCCATTGATAATCTCATTTATAGTTTTATTTTCATGCCTAGGTACTGGTCAAACATTTGCCTATGGTTTTAACAAGCTCTTTAAAGGTCTTTTGAAATTGTTAAGTAGACAGTAAATATACAAGACATATGTAGTCTTTCATTTTGTTGTATCATTGCTTATATGACCATGTAGTTGTTTATTTTTAGGATGTTGCTTAAATTCTTCTATTCTCCATAGATTGGAGGATCAAAAACTGTCCAGAAATAAATTATATAATATTAGTGTGATAATCTAATGGACATGCATTGGGATTCCAATTTTTGGTGCCAAGTTATATCCCTCATCCATCTATGATCTAGCTAACCAGGCTTTATATAACTTAAAACACGAGCTCTATCTTGATCCAGACTGAATTAAGGAAAAATATATGGTGACGTGATCAATTGTCTTTCTGCTCGAAGTTCTCACAACTTCATTATTCCATTCGTTGAGTATGAAGAATATATAGTTGTTAATTACTTTCTAATTGGGGCTTTAAACCTCTGCAGATTGTTGGAGATGCAAATGGTGTAAAGAAAGCTATAGCTATCATTTCATCACGCTTGAGAGAGAGCCAGCATCGTGACCGTAGTCATTTCCATGGGCGTCTACATTCACCAGAACGAATGTTCCCTCCTGATGATGATTATGTTCCACATACAGCACGGCGATTATCAATGGATGGACGACCATTTAGGCCACGTATATCTGCTTCTAATACAAGAAGCAATGACTATTTGAACCGTCATTCTAGTTTTTCGGTGGAGCATGGGGCTACTCCTGTTAATGACAATATGATGCCCTTTTATGGTGAGGACCTTGTATTTAGAATATTATGCCCAATTGAGAAGGTTGATAGTGTCATTGGAGAGTCTGATGGAATCATAGAATTACTTCGGAATGAAGTTGGTGTGGATATCAAGGTTTCAAGCCCTATGACTGGTTCAAACGAACAAATTCTTATCATTTCCTCGGACGAGGTACTTCAACTTTTTTTTTCTGCCTTAGTGGTGTACACCAATTTACTGTTTCCTAGGTCCAAATCACTTAAGATTGCCTTTCCTTGCAGACGATTTTTAGGAGTTATATAAATAATCACTAAACTGACTTTAAAAGTTATGTTTACCATTTATATATTCATATTTTTCTTGTTTAACTTTCTGATCGGAAAATTTGAGTTCTTAGGGTCCAGATGATGAGCTTTTTCCAGCACAGGAAGCTTTGTTACACATCCAAACTCGCATTGTTGATCTTGTTCCTGACAAGGATAACATTGTAACTACTAGGTTACTTGTCCATTCAAGTGATATTGGATGTTTGGAGGGAAGAGATGGATCGTTGTTAGAGATGAAGAGATTAACTGGTGCAAATGTACAAATTGTGCCAAGAGAAGAACTTCCCATGTTTGTATCTGGGGCTGACGAGCTTGTACAGGTTTGTCATTGAACTTTAAATTGATAGAATTCCTAGATTTGATTAAAGTTGTTTAATGTAATTACATTTTGCTCTTCGAGTTTCTTTTTTTTTTTTTTTTAATTTTAAATTCATAGCTTTTGTAGAATTTTTTTCCTTAAATCAGTTACAGAACATGGGCATGAACAGTGAAAGTTAGCGGTCTTAAACCATTGTATGAATATTACTTTTATTTATCTTTTTTTTCCTCTATTTTTTAAGGATTAAATATGCATATTCTGATTTGAAAATGCAGTTATGAAGTCTCAGGTTAGTAGAAAATATTGGTCTTTCCTGATGTATAAATAATATTTTCTAATTTTTCTACTTTGTTTTATAACTAGTCATTTGGTTTTTTAGCTAGAATTTTGATTAGTAAGAATCTATACTCTGTTTATATGGACGGTAATTTTTGTTTTAAAATATTTTCTAATTTTTCTACTAATGTGTCTAGTTGGAATTGATGACTTTTTCTTCCTGAGTTTCTAATTCCGTAACTGCAATGTTTGTAGATCATAGGGGACATACAAGCAGCTCGAGATGCACTTGTTGAGTTAACATCAAGATTACGGAGTTATATTTGTAAGGAGCCCTACCAAAAAGATGCAAGTCCTCCGATCTCAGCACTGAACACCATGGTCAGTTTAGGACTCGAGGAATCATCTTCAAATAATAATGCTGCAGCTCGTGAAGTTCACAGTGGAAATGATTCTTTTAGCACGGCCTATCAAAATGTGCAACCTTTTGCAACAGCACAGCTTCTGAAGGTTGCTTATTTTTTAAATCTTTTTTCTTCTCTCATGACGAGAGGATTCTTTCTTTTCAGAACGGTCTCTTATCAGCCATTATGAGTGGAGCCACTTTACTTTCTTTGGATACGAAACTATTTCAGATTAAGGTTCTTCTGAAAACTTCTTCTGCATAAACTTGCTTTCTCTTTCAGACAAGTAGTAAAAGATTCAACCAAGATTTGAAGCCTTCGTGTTAAATCCCTTGAGCCATTGGTCACTCGCAATTTTATAAAATCCAATGTGCCAAATGTTATTTTGGTAGTCATATGATGGTTCAAGTTCCAATCTGTGGGGGAAAAAAGAAAAAGTCGGGTCATTTTTCTTGCGTGTCTAAAGGGAAAAAAAAGTGTTTTTGGCCAACCTAGGTGAACATTTGGTTTCTACTATGGGTCTTCTTATATGTTTCTTTTGCATTAATATTCAGGAGTATTTATTGGTTTAATAACATACCTGCACTCCATAAGTTCTATTGCATTTGAATGCGCACCTCTACTGAGACTTCAGTTCTGCACCAAAAAGATTCAAACTATCATTTGCAGGAAACTGGAGGGGCGAGCAATGAGACTGGTACGCAGAATGAAAATGATCGACGTGAAGATTTGCCTAGTGGGTTAAATAGGTAGAACTTCTTTCTGCAATGCTGATTCCTCCCCCTCCCTCAATTCTTTTGAATCAATGAGACATTTTATAAGTTACAAATGACTTCATGGTGTTTTCCTGCCTGTCATTTACATGCTTCTCTTATAAGTTAGATCAATGACTTCACTGCAATATATAAGTTTTGACATTCCGATTAGGATCCCTGTGCCGCTTGTCACTCGGAGCACACTTGAAGTTGTGATACCAGAGCCTGCAGTTCCCCAGCTTATAACAAAGTCAAAAAACAAGCTTGCTCAGATCAGTGAGGTGGCAGTAGTTAAATTTTGTCAAACCTTTCTGTAGTATATTAAGAAAATGCCTTGTTGGCTGATATTTTGTTTCTATCAGTTATCCGGAGCCAATGTTACGTTGGTAGAAGATAGACCAGATGTAACCCAGAAGATAATTCAAATATCAGGAACACCAGAGCAAGCAGAAAGAGCCCAGAGCTTGCTGCAAGGCTTTATTTTGAGCAGTAAGTCTCTCTCACTAACCCATTTTGTGTTACATTTCTAATCTTAGATTACTTTTTTTCTCTGTATTTACTTTGTTTGTTTAACACTTTTCAGTGCAAGAAGATGGGCCTTGAGTTATGGCCATTTGGTTTACTCTGAACTTTAGTTGCCTATATAAAAGGATTGACCCATCATGATCAACTGTATTTATCACGGGGCTCTTGCTTCTAGGCTCGGAAGGTGTCTCATTTCTAGCTGAGCCATGGTCGAAGACAGCGAATTAA

mRNA sequence

ACGGGATTGAAGCAACGGAATTGAAGCAACGGAATTGAAGCAACGGAATTGAAGCAACGGAGTGAGTTCTGAGTTCTGAGTTTTTATTTTGTTTCTGTTCTTTTTGGACCCGAGGAATCTAATCTACTTATGAGTTAGAGATTTTGGACCCTTTTACTCCAGAAGATAAGATTGTAACAAAACTGGAAAATCAAAGCCAATGACATCGAATTTCTGTGACTCTAATGGCTTCGCATTGAAATCAACTAAACCGGGGTAACCATTATTTAACATTTGAGATGGAGAAGTCTAGATCTAAGAGAAACTACTACTATGACCACCAAGACTATGATTCCGAAGCGATGGGTAGAACCAGACCACGTTACAACAATCACTACGCCAGTAATAACTATCGTCACCGTGGCAGTGCAATTCGACCGTCTAAACCTCAAGACCAACCTCTTATGGTGACCACAACTTACAGGATACTCTGTCATGACGCCAAAGCCGGGGGTGTCATCGGAAAATCTGGTAGTATCATTAAGTCCATAAGGCAGCACACCGGTGCGTGGATCAACGTGCATGAGCTTGTTCCGGGCGATGAGGAGAGAATAATTGAGATATCGGACACTCGGCGGCGGGACCCCGAAGGTCGGATGTCGTCGTTCTCTCCCGCGCAGGAAGCACTTTTCTTGATTCATGAAAGGATTCTCGAGAGTGAAATGAGTCCTGGGTTTAATGGAATGGGGTATGGTGCTGAGGATGAGGAGGATGATTACGGCGAGGTTAGAGGAGGAGCTGGTGGTGGCAATAGCCGTGTGGCCACAAGGCTTGTGGTGTCTAGAATGCACGTAGGTTGTTTGCTAGGGAAGGGAGGAAAGATAATCGAGCAAATGAGAATGGAAACCAAGACTCAGATAAGGGTTCTACCTAGAGATCACAATTTGCCTAGCTGCATTACAATGTCAGAGGAGATCGTTCAGATTGTTGGAGATGCAAATGGTGTAAAGAAAGCTATAGCTATCATTTCATCACGCTTGAGAGAGAGCCAGCATCGTGACCGTAGTCATTTCCATGGGCGTCTACATTCACCAGAACGAATGTTCCCTCCTGATGATGATTATGTTCCACATACAGCACGGCGATTATCAATGGATGGACGACCATTTAGGCCACGTATATCTGCTTCTAATACAAGAAGCAATGACTATTTGAACCGTCATTCTAGTTTTTCGGTGGAGCATGGGGCTACTCCTGTTAATGACAATATGATGCCCTTTTATGGTGAGGACCTTGTATTTAGAATATTATGCCCAATTGAGAAGGTTGATAGTGTCATTGGAGAGTCTGATGGAATCATAGAATTACTTCGGAATGAAGTTGGTGTGGATATCAAGGTTTCAAGCCCTATGACTGGTTCAAACGAACAAATTCTTATCATTTCCTCGGACGAGGGTCCAGATGATGAGCTTTTTCCAGCACAGGAAGCTTTGTTACACATCCAAACTCGCATTGTTGATCTTGTTCCTGACAAGGATAACATTGTAACTACTAGGTTACTTGTCCATTCAAGTGATATTGGATGTTTGGAGGGAAGAGATGGATCGTTGTTAGAGATGAAGAGATTAACTGGTGCAAATGTACAAATTGTGCCAAGAGAAGAACTTCCCATGTTTGTATCTGGGGCTGACGAGCTTGTACAGATCATAGGGGACATACAAGCAGCTCGAGATGCACTTGTTGAGTTAACATCAAGATTACGGAGTTATATTTGTAAGGAGCCCTACCAAAAAGATGCAAGTCCTCCGATCTCAGCACTGAACACCATGGTCAGTTTAGGACTCGAGGAATCATCTTCAAATAATAATGCTGCAGCTCGTGAAGTTCACAGTGGAAATGATTCTTTTAGCACGGCCTATCAAAATGTGCAACCTTTTGCAACAGCACAGCTTCTGAAGGAAACTGGAGGGGCGAGCAATGAGACTGGTACGCAGAATGAAAATGATCGACGTGAAGATTTGCCTAGTGGGTTAAATAGGATCCCTGTGCCGCTTGTCACTCGGAGCACACTTGAAGTTGTGATACCAGAGCCTGCAGTTCCCCAGCTTATAACAAAGTCAAAAAACAAGCTTGCTCAGATCAGTGAGTTATCCGGAGCCAATGTTACGTTGGTAGAAGATAGACCAGATGTAACCCAGAAGATAATTCAAATATCAGGAACACCAGAGCAAGCAGAAAGAGCCCAGAGCTTGCTGCAAGGCTTTATTTTGAGCAGCTCGGAAGGTGTCTCATTTCTAGCTGAGCCATGGTCGAAGACAGCGAATTAA

Coding sequence (CDS)

ATGGAGAAGTCTAGATCTAAGAGAAACTACTACTATGACCACCAAGACTATGATTCCGAAGCGATGGGTAGAACCAGACCACGTTACAACAATCACTACGCCAGTAATAACTATCGTCACCGTGGCAGTGCAATTCGACCGTCTAAACCTCAAGACCAACCTCTTATGGTGACCACAACTTACAGGATACTCTGTCATGACGCCAAAGCCGGGGGTGTCATCGGAAAATCTGGTAGTATCATTAAGTCCATAAGGCAGCACACCGGTGCGTGGATCAACGTGCATGAGCTTGTTCCGGGCGATGAGGAGAGAATAATTGAGATATCGGACACTCGGCGGCGGGACCCCGAAGGTCGGATGTCGTCGTTCTCTCCCGCGCAGGAAGCACTTTTCTTGATTCATGAAAGGATTCTCGAGAGTGAAATGAGTCCTGGGTTTAATGGAATGGGGTATGGTGCTGAGGATGAGGAGGATGATTACGGCGAGGTTAGAGGAGGAGCTGGTGGTGGCAATAGCCGTGTGGCCACAAGGCTTGTGGTGTCTAGAATGCACGTAGGTTGTTTGCTAGGGAAGGGAGGAAAGATAATCGAGCAAATGAGAATGGAAACCAAGACTCAGATAAGGGTTCTACCTAGAGATCACAATTTGCCTAGCTGCATTACAATGTCAGAGGAGATCGTTCAGATTGTTGGAGATGCAAATGGTGTAAAGAAAGCTATAGCTATCATTTCATCACGCTTGAGAGAGAGCCAGCATCGTGACCGTAGTCATTTCCATGGGCGTCTACATTCACCAGAACGAATGTTCCCTCCTGATGATGATTATGTTCCACATACAGCACGGCGATTATCAATGGATGGACGACCATTTAGGCCACGTATATCTGCTTCTAATACAAGAAGCAATGACTATTTGAACCGTCATTCTAGTTTTTCGGTGGAGCATGGGGCTACTCCTGTTAATGACAATATGATGCCCTTTTATGGTGAGGACCTTGTATTTAGAATATTATGCCCAATTGAGAAGGTTGATAGTGTCATTGGAGAGTCTGATGGAATCATAGAATTACTTCGGAATGAAGTTGGTGTGGATATCAAGGTTTCAAGCCCTATGACTGGTTCAAACGAACAAATTCTTATCATTTCCTCGGACGAGGGTCCAGATGATGAGCTTTTTCCAGCACAGGAAGCTTTGTTACACATCCAAACTCGCATTGTTGATCTTGTTCCTGACAAGGATAACATTGTAACTACTAGGTTACTTGTCCATTCAAGTGATATTGGATGTTTGGAGGGAAGAGATGGATCGTTGTTAGAGATGAAGAGATTAACTGGTGCAAATGTACAAATTGTGCCAAGAGAAGAACTTCCCATGTTTGTATCTGGGGCTGACGAGCTTGTACAGATCATAGGGGACATACAAGCAGCTCGAGATGCACTTGTTGAGTTAACATCAAGATTACGGAGTTATATTTGTAAGGAGCCCTACCAAAAAGATGCAAGTCCTCCGATCTCAGCACTGAACACCATGGTCAGTTTAGGACTCGAGGAATCATCTTCAAATAATAATGCTGCAGCTCGTGAAGTTCACAGTGGAAATGATTCTTTTAGCACGGCCTATCAAAATGTGCAACCTTTTGCAACAGCACAGCTTCTGAAGGAAACTGGAGGGGCGAGCAATGAGACTGGTACGCAGAATGAAAATGATCGACGTGAAGATTTGCCTAGTGGGTTAAATAGGATCCCTGTGCCGCTTGTCACTCGGAGCACACTTGAAGTTGTGATACCAGAGCCTGCAGTTCCCCAGCTTATAACAAAGTCAAAAAACAAGCTTGCTCAGATCAGTGAGTTATCCGGAGCCAATGTTACGTTGGTAGAAGATAGACCAGATGTAACCCAGAAGATAATTCAAATATCAGGAACACCAGAGCAAGCAGAAAGAGCCCAGAGCTTGCTGCAAGGCTTTATTTTGAGCAGCTCGGAAGGTGTCTCATTTCTAGCTGAGCCATGGTCGAAGACAGCGAATTAA

Protein sequence

MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHYASNNYRHRGSAIRPSKPQDQPLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRMSSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGGGNSRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQIVGDANGVKKAIAIISSRLRESQHRDRSHFHGRLHSPERMFPPDDDYVPHTARRLSMDGRPFRPRISASNTRSNDYLNRHSSFSVEHGATPVNDNMMPFYGEDLVFRILCPIEKVDSVIGESDGIIELLRNEVGVDIKVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRLLVHSSDIGCLEGRDGSLLEMKRLTGANVQIVPREELPMFVSGADELVQIIGDIQAARDALVELTSRLRSYICKEPYQKDASPPISALNTMVSLGLEESSSNNNAAAREVHSGNDSFSTAYQNVQPFATAQLLKETGGASNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEPAVPQLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSSSEGVSFLAEPWSKTAN

Homology

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BLAST of CmoCh18G013520.1 vs. ExPASy Swiss-Prot
Match: Q8W4B1 (RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana OX=3702 GN=RCF3 PE=1 SV=1)

HSP 1 Score: 723.0 bits (1865), Expect = 3.1e-207
Identity = 409/677 (60.41%), Postives = 500/677 (73.86%), Query Frame = 0


Query: 1   MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHY-----ASNNYRHRGSA------IRPSK 60
           ME+SRSKRNY+YD QDYD ++M R++PRYNN+Y        N R+RG         RPSK
Sbjct: 1   MERSRSKRNYHYD-QDYDGDSMPRSKPRYNNNYHFGGGGGGNNRYRGGGGGGGGNGRPSK 60

Query: 61  PQDQPLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEIS 120
              +  M TTTYRILCHDAKAGGVIGKSG+IIKSIRQHTGAWINVHELVPGD ERIIEIS
Sbjct: 61  SHPE-TMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEIS 120

Query: 121 DTRRRDPEGRMSSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGG 180
           D RRRDP+GRM SFSPAQEALF +H+RILESE   G+ G      +EE+DYG VR G G 
Sbjct: 121 DNRRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGG---PPPEEEEDYGGVRPGGG- 180

Query: 181 GNSRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQI 240
              RV TRLVVSRMHVGCLLGKGGKIIEQMR+ETKT IR+LPR+ NLP C+++SEEIVQI
Sbjct: 181 ---RVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQI 240

Query: 241 VGDANGVKKAIAIISSRLRESQHRDRSHFHGRLHSPERMF-PPDDDYVPHTARRLSMDGR 300
           VG+ N VK A+AI+SSRLRESQHRDRS+F GR HSPER F    DDY+P   R+ S    
Sbjct: 241 VGELNAVKNALAIVSSRLRESQHRDRSNFQGRSHSPERSFAAAGDDYMPQLRRQSS---- 300

Query: 301 PFRPRISASNTRSNDYLNRHSSFSVEHGATPVNDNMMPFYGEDLVFRILCPIEKVDSVIG 360
               R    N R+N++ +R S+++ E  A PV +N+   Y E+LVF+ILCP +K+  V+G
Sbjct: 301 ---DRFPRGNFRNNNFSSRQSNYAEEAPAVPVGENV---YSEELVFQILCPADKIVRVVG 360

Query: 361 ESDGIIELLRNEVGVDIKVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDL 420
           ES GII+LL+NE+GVD++VS P+ GS+EQI+ ISS+E PDD  FPAQEALLHIQT+I+DL
Sbjct: 361 ESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDDPFFPAQEALLHIQTQIIDL 420

Query: 421 VPDKDNIVTTRLLVHSSDIGCLEGRDGSLLEMKRLTGANVQIVPREELPMFVSGADELVQ 480
           +PDKDN++TTRLLV S D  CLEG+ GS+ E+ RLTG +VQI+ REE+P   S  D ++Q
Sbjct: 421 IPDKDNLITTRLLVPSRDSICLEGKAGSVSEISRLTGTSVQILAREEIPRCASINDVVIQ 480

Query: 481 IIGDIQAARDALVELTSRLRSYICKEPYQKDASPPISALNTMVSLG----LEESSSNNNA 540
           I G+I+AAR+ALVELT  LRS++ KE  QK+ +PP S   T    G    +E +SSNN  
Sbjct: 481 ITGEIRAAREALVELTLLLRSHMFKELSQKE-TPPASTSTTGPLEGVAGVMEVASSNNTI 540

Query: 541 AAREVHSGNDSFSTAYQNVQPFATAQLLKETGGASNETGTQNENDRREDLPSGLNRIPVP 600
            +RE   G  S +   Q V         KE  G+  + G   E++ RE++P   +R+ VP
Sbjct: 541 QSRE---GPTSSNLNLQQVSTILPQ--FKEGFGSVAKAG---ESEHREEVPVTTSRMAVP 600

Query: 601 LVTRSTLEVVIPEPAVPQLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQ 660
           LVTRSTLEVV+PE  VP+L+TKS+NKLAQISE SGA+VT+VEDRP+ TQ II+ISGTPEQ
Sbjct: 601 LVTRSTLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQ 649

Query: 661 AERAQSLLQGFILSSSE 662
           AERAQSLLQGFILS  E
Sbjct: 661 AERAQSLLQGFILSIQE 649

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BLAST of CmoCh18G013520.1 vs. ExPASy Swiss-Prot
Match: F4KDN0 (KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 3.4e-44
Identity = 201/827 (24.30%), Postives = 327/827 (39.54%), Query Frame = 0


Query: 61  YRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRM 120
           +R+LC  +  G VIGKSG++IK ++Q TGA I V E   G  +R+I I    + D + R+
Sbjct: 49  FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITI--IAQADSKSRV 108

Query: 121 SSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEED-DYGEVRG---------GAGGG 180
                               ++    NG   G + EE+ +  + +G          A   
Sbjct: 109 --------------------KLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEAD 168

Query: 181 NSRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQIV 240
           +  V  RL+    H G ++GKGG+++  +R ET  +I +  R  NLP C    +E+V++ 
Sbjct: 169 SDTVVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISI--RIENLPICADTDDEMVEVE 228

Query: 241 GDANGVKKAIAIISS--------------------------------------------- 300
           G+A  VKKA+  IS                                              
Sbjct: 229 GNAIAVKKALVSISRCLQNCQSIDKVRMVGNRPLEKEFQASLHRPIETIIQESLPRSVEV 288

Query: 301 -----RLRES-------------------------------------------------- 360
                RLR                                                    
Sbjct: 289 NPYDYRLRNDEIFPRGTVARANDVIPHDTLHLRRIEAVPQGALRMHIEADRQDVLRRHVE 348

Query: 361 --------------------------------QHRDRSHFHGRLHSPERMFPPDDDYVPH 420
                                           QHR+R   H  LH P  M P D   +P 
Sbjct: 349 ADRQDALRRRIDVVPQETLYMPSDVLRGDCFRQHRERDDSHDSLHRPFEMVPRDAMGMPF 408

Query: 421 TARRLSMDGRPFRPRISAS-NTRSNDYL-NRHSSFSVEHGATPVNDNM------------ 480
            +      GRP       +   +S DYL +R+S+      +   + +M            
Sbjct: 409 ESFPRDAYGRPIETMTQETLRGQSADYLAHRYSTLDTHPHSFTTSASMANTATMKPPPSE 468

Query: 481 MPFYGEDLVFRILCPIEKVDSVIGESDGIIELLRNEVGVDIKVSSPMTGSNEQILIISSD 540
           +    +D+VF+ILC  E    VIG    ++ +L +E G  I V + +    E+++ +++ 
Sbjct: 469 VEVGNQDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTAS 528

Query: 541 EGPDDELFPAQEALLHIQTRIVDLVPDK--DN----IVTTRLLVHSSDIGCLEGRDGSLL 600
           E P+ +  PAQ+A++ I +R+ +L  +K  DN     +T RL+V +S IGC+ G+ G ++
Sbjct: 529 ENPECQSSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIV 588

Query: 601 -EMKRLTGANVQIVPREELPMFVSGADELVQIIGDIQAARDALVELTSRLRSYICKEPYQ 660
            EM++ TGA +QI+  E+ P  +S  D++VQI G+    R+A+  +TSRLR  +     +
Sbjct: 589 SEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMK 648

Query: 661 KDASPPISALNT----------MVSLGLEESSSNNNAAAREVH-SGNDSF-STAYQNV-- 665
              +   SAL T           +S+G  +S SN    +  +H    DSF S ++ +V  
Sbjct: 649 NSLAKSSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNY 708

[Close]

BLAST of CmoCh18G013520.1 vs. ExPASy Swiss-Prot
Match: P58223 (KH domain-containing protein At4g18375 OS=Arabidopsis thaliana OX=3702 GN=At4g18375 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 7.3e-39
Identity = 182/673 (27.04%), Postives = 308/673 (45.77%), Query Frame = 0


Query: 20  EAMGRTRPRYNNHYASNNYRHRGSAIRPSKPQDQPLMVTTTYRILCHDAKAGGVIGKSGS 79
           E   R + + NN  ++ N + R   I   K     L+V   YRILC     GGVIGKSG 
Sbjct: 3   ERKKRKQIQRNNSESNRNQKRR---ISHDKINRDELVV---YRILCPIDVVGGVIGKSGK 62

Query: 80  IIKSIRQHTGAWINVHELVPGDEERIIEI--SDTRRRDPEGRMSSFSP----AQEALFLI 139
           +I +IR +T A I V + + G  +R+I I  S   +++  G   S +     AQ+AL  +
Sbjct: 63  VINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQDALLKV 122

Query: 140 HERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGGGNSRVATRLVVSRMHVGCLLGKGG 199
           ++ I+ S+              + DD  E              RL+V       L+GK G
Sbjct: 123 YDAIVASDEENNTK-----TNVDRDDNKE-------------CRLLVPFSQSSSLIGKAG 182

Query: 200 KIIEQMRMETKTQIRVLPRDHNLPS--CITMSEEIVQIVGDANGVKKAIAIISSRLRESQ 259
           + I+++R  T+  ++V+ +D + PS  C    + +V I G+   VK+A+  +S+ + +  
Sbjct: 183 ENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYKIN 242

Query: 260 HRDRSHFHGR---LHSPERMFPPD--DDYVPHTARRLSMD-------GRP-FRPRISASN 319
            R+          + +   + P D  +   P T    + D       G P +   +S S+
Sbjct: 243 PRENIPLDSTSQDVPAASVIVPSDLSNSVYPQTGFYSNQDHILQQGAGVPSYFNALSVSD 302

Query: 320 ------TRSNDYLNRHSSFSVEHGATPVNDNMMPFYGEDLVFRILCPIEKVDSVIGESDG 379
                 T +N      SS  V HG    + +      E+LVF++LCP+  +  VIG+   
Sbjct: 303 FQGYAETAANPVPVFASSLPVTHGFGGSSRS------EELVFKVLCPLCNIMRVIGKGGS 362

Query: 380 IIELLRNEVGVDIKVSSPMT--GSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVP 439
            I+ +R   G  I+V+   T  G +E ++I+++ E PDD    A EA+L +Q  I D   
Sbjct: 363 TIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQEYIND--E 422

Query: 440 DKDNIVTTRLLVHSSDIGCLEGRDGSLL-EMKRLTGANVQIVPREELPMFVSGADELVQI 499
           D +N V  +LLV S  IGC+ G+ GS++ E+++ T AN+ I   ++        D+LV++
Sbjct: 423 DAEN-VKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGKK--------DDLVEV 482

Query: 500 IGDIQAARDALVELTSRLRSYICKEPYQKDASPPISALNTMVSLGLEESSSNNNAAAREV 559
            G++ + RDAL+++  RLR  +                     LG ++S +     AR  
Sbjct: 483 SGEVSSVRDALIQIVLRLREDV---------------------LGDKDSVATRKPPAR-- 542

Query: 560 HSGNDSFSTAYQN---VQPFATAQLLKETGGASNETGTQNENDRREDLPSGLNRIPVPLV 619
            + N SF +   N     P   + +   +G     +    +N      P    R+P    
Sbjct: 543 -TDNCSFLSGSSNAGYTLPSFMSSMASTSGFHGYGSFPAGDNVLGSTGPYSYGRLP---- 602

Query: 620 TRSTLEVVIPEPAVPQLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAE 660
           + S LE++IP  A+ +++ K    L  I  +SGA + +   +      I  +SGT EQ  
Sbjct: 603 SSSALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMR 606

[Close]

BLAST of CmoCh18G013520.1 vs. ExPASy Swiss-Prot
Match: Q9SR13 (Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-18
Identity = 81/346 (23.41%), Postives = 158/346 (45.66%), Query Frame = 0


Query: 326 PFYGEDLVFRILCPIEKVDSVIGESDGIIELLRNEVGVDIKVSSPMTGSNEQILIISSDE 385
           P +  + VFR+L P +KV S+IG    +I+ +  E    IK+     G+ E+ +++S  E
Sbjct: 181 PGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKE 240

Query: 386 GPDDELFPAQEALLHIQTRIVDLVPDK------DNIVTTRLLVHSSDIGCLEGRDGSLLE 445
            P+  L P+ + LL +  RIVD +  +       + V+TRLLV +S  G L G+ G  ++
Sbjct: 241 EPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVK 300

Query: 446 -MKRLTGANVQIVPREELPMFVSGADELVQIIGDIQAARDALVELTSRLRSYICKEP--- 505
            ++  +   V+++  E+LP+F    D +V+++G+  +   AL  + S LR ++       
Sbjct: 301 AIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLVDRSIIP 360

Query: 506 -YQKDASPPISALNTM----VSLGLEESSSNNNAAAREVHSGNDSFSTAYQNVQPFATAQ 565
            ++     P   ++ M     S G  +  + +       H+         ++   +   +
Sbjct: 361 FFENQMQKPTRQMDHMPPPHQSWGPPQGHAPSVGGGGYGHNPPPYMQPPPRHDSYYPPPE 420

Query: 566 LLKETGGASNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEPAVPQLITKSKNK 625
           + +         G  +   R   +   ++  P  +  + T ++ IP      +I  S + 
Sbjct: 421 MRQPPMEKQPHQGI-SAYGREPPMNVHVSSAPPMVAQQVTQQMQIPLSYADAVIGTSGSN 480

Query: 626 LAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFI 657
           ++    LSGA VT+ E R    +  +++SGT  Q + A  L+Q F+
Sbjct: 481 ISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFM 525

[Close]

BLAST of CmoCh18G013520.1 vs. ExPASy Swiss-Prot
Match: Q9SZH4 (RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 GN=PEP PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.1e-18
Identity = 96/378 (25.40%), Postives = 171/378 (45.24%), Query Frame = 0


Query: 305 LNRHSSFSVEHGATP-VNDN---MMPFYGEDLVFRILCPIEKVDSVIGESDGIIELLRNE 364
           LN+  S +      P  ND+     P +  D VFR++ P+ KV ++IG     I+ +  E
Sbjct: 43  LNQPDSLAAAETTFPDTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEE 102

Query: 365 VGVDIKVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDN------ 424
               IKV      + ++I++IS  E P+  + PA +A+L +  R+  L PD D+      
Sbjct: 103 TRARIKVLDGPVNTPDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGL-PDNDDDDVQNA 162

Query: 425 ---IVTTRLLVHSSDIGCLEGRDGSLLE-MKRLTGANVQIVPREELPMFVSGADELVQII 484
                + RLLV S+    L G+ GSL++ +   +GA+V+I+  EE P + +  + +V + 
Sbjct: 163 GSVFSSVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQ 222

Query: 485 GDIQAARDALVELTSRLRSYICKEP----YQKDASPPISALNTMVSLGLEESSSNNNAAA 544
           G+      AL  +   LR ++        ++K     +S   T     L ES S+ +  +
Sbjct: 223 GEALKILKALEAIVGHLRRFLVDHTVVPLFEKQYLARVS--QTRQEEPLAESKSSLHTIS 282

Query: 545 REVHSGNDSFSTAYQNVQPFATAQLLKETGGASNETGTQNENDRREDLPSGLNRIPVPLV 604
             +   + S     + +     +++      +     +Q+        P GL R+    V
Sbjct: 283 SNLMEPDFSLLARREPLFLERDSRVDSRVQPSGVSIYSQDPVLSARHSP-GLARVSSAFV 342

Query: 605 TRSTLEVVIPEPAVPQLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAE 664
           T+ +  + IP      +I      +A I   SGA +T +++ P   Q  ++I GT  Q +
Sbjct: 343 TQVSQTMQIPFSYAEDIIGVEGANIAYIRRRSGATIT-IKESPHPDQITVEIKGTTSQVQ 402

[Close]

BLAST of CmoCh18G013520.1 vs. ExPASy TrEMBL
Match: A0A6J1G1J7 (RNA-binding KH domain-containing protein RCF3-like OS=Cucurbita moschata OX=3662 GN=LOC111449824 PE=4 SV=1)

HSP 1 Score: 1290.0 bits (3337), Expect = 0.0e+00
Identity = 659/661 (99.70%), Postives = 659/661 (99.70%), Query Frame = 0


Query: 1   MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHYASNNYRHRGSAIRPSKPQDQPLMVTTT 60
           MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHYASNNYRHRGSAIRPSKPQDQPLMVTTT
Sbjct: 1   MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHYASNNYRHRGSAIRPSKPQDQPLMVTTT 60

Query: 61  YRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRM 120
           YRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRM
Sbjct: 61  YRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRM 120

Query: 121 SSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGGGNSRVATRLVV 180
           SSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGGGNSRVATRLVV
Sbjct: 121 SSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGGGNSRVATRLVV 180

Query: 181 SRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQIVGDANGVKKAI 240
           SRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQIVGDANGVKKAI
Sbjct: 181 SRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQIVGDANGVKKAI 240

Query: 241 AIISSRLRESQHRDRSHFHGRLHSPERMFPPDDDYVPHTARRLSMDGRPFRPRISASNTR 300
           AIISSRLRESQHRDRSHFHGRLHSPERMFPPDDDYVPHTARRLSMDGRPFRPRISASNTR
Sbjct: 241 AIISSRLRESQHRDRSHFHGRLHSPERMFPPDDDYVPHTARRLSMDGRPFRPRISASNTR 300

Query: 301 SNDYLNRHSSFSVEHGATPVNDNMMPFYGEDLVFRILCPIEKVDSVIGESDGIIELLRNE 360
           SNDYLNRHSSFSVEHGATPVNDNMMPFYGEDLVFRILCPIEKVDSVIGESDGIIELLRNE
Sbjct: 301 SNDYLNRHSSFSVEHGATPVNDNMMPFYGEDLVFRILCPIEKVDSVIGESDGIIELLRNE 360

Query: 361 VGVDIKVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRL 420
           VGVDIKVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRL
Sbjct: 361 VGVDIKVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRL 420

Query: 421 LVHSSDIGCLEGRDGSLLEMKRLTGANVQIVPREELPMFVSGADELVQIIGDIQAARDAL 480
           LVHSSDIGCLEGRDGSLLEMKRLTGANVQIVPREELPMFVSGADELVQIIGDIQAARDAL
Sbjct: 421 LVHSSDIGCLEGRDGSLLEMKRLTGANVQIVPREELPMFVSGADELVQIIGDIQAARDAL 480

Query: 481 VELTSRLRSYICKEPYQKDASPPISALNTMVSLGLEESSSNNNAAAREVHSGNDSFSTAY 540
           VELTSRLRSYICKEPYQKDASPPISALNTMVSLGLEESSSNNNAAAREVHSGNDSFSTAY
Sbjct: 481 VELTSRLRSYICKEPYQKDASPPISALNTMVSLGLEESSSNNNAAAREVHSGNDSFSTAY 540

Query: 541 QNVQPFATAQLLKETGGASNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEPAV 600
           QNVQPFATAQLLKETGGASNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEPAV
Sbjct: 541 QNVQPFATAQLLKETGGASNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEPAV 600

Query: 601 PQLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSSS 660
           PQLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILS  
Sbjct: 601 PQLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSMQ 660

Query: 661 E 662
           E
Sbjct: 661 E 661

[Close]

BLAST of CmoCh18G013520.1 vs. ExPASy TrEMBL
Match: A0A6J1HSU9 (RNA-binding KH domain-containing protein RCF3-like OS=Cucurbita maxima OX=3661 GN=LOC111467470 PE=4 SV=1)

HSP 1 Score: 1271.5 bits (3289), Expect = 0.0e+00
Identity = 648/661 (98.03%), Postives = 655/661 (99.09%), Query Frame = 0


Query: 1   MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHYASNNYRHRGSAIRPSKPQDQPLMVTTT 60
           MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHY+SNNYRHRGSAIRPSKPQDQPLMVTTT
Sbjct: 1   MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHYSSNNYRHRGSAIRPSKPQDQPLMVTTT 60

Query: 61  YRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRM 120
           YRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRM
Sbjct: 61  YRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRM 120

Query: 121 SSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGGGNSRVATRLVV 180
           SSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGGG+SRVATRLVV
Sbjct: 121 SSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGGGSSRVATRLVV 180

Query: 181 SRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQIVGDANGVKKAI 240
           SRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQIVGDANGVKKA 
Sbjct: 181 SRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQIVGDANGVKKAT 240

Query: 241 AIISSRLRESQHRDRSHFHGRLHSPERMFPPDDDYVPHTARRLSMDGRPFRPRISASNTR 300
           AIISSRLRESQHRDRSHFHGRLHSPERMFPPDDDYVPHTARRLSMDGRPFRPRISASNTR
Sbjct: 241 AIISSRLRESQHRDRSHFHGRLHSPERMFPPDDDYVPHTARRLSMDGRPFRPRISASNTR 300

Query: 301 SNDYLNRHSSFSVEHGATPVNDNMMPFYGEDLVFRILCPIEKVDSVIGESDGIIELLRNE 360
           SNDYLNRHS+FSVE+GATPVNDNMMPFYGEDLVFRILCPI+KVDSVIGESDGIIELLRNE
Sbjct: 301 SNDYLNRHSNFSVEYGATPVNDNMMPFYGEDLVFRILCPIDKVDSVIGESDGIIELLRNE 360

Query: 361 VGVDIKVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRL 420
           VGVDIKVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRL
Sbjct: 361 VGVDIKVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRL 420

Query: 421 LVHSSDIGCLEGRDGSLLEMKRLTGANVQIVPREELPMFVSGADELVQIIGDIQAARDAL 480
           LVHSSDIGCLEGRDGSLLEMKRLTGANVQIVPREELPMFVSGADELVQIIGDIQAARDAL
Sbjct: 421 LVHSSDIGCLEGRDGSLLEMKRLTGANVQIVPREELPMFVSGADELVQIIGDIQAARDAL 480

Query: 481 VELTSRLRSYICKEPYQKDASPPISALNTMVSLGLEESSSNNNAAAREVHSGNDSFSTAY 540
           VELTSRLRSYICKEPYQKDASPPIS  +TMVSLGLEESSSNNNAAAREVHSGNDSFSTAY
Sbjct: 481 VELTSRLRSYICKEPYQKDASPPISVPSTMVSLGLEESSSNNNAAAREVHSGNDSFSTAY 540

Query: 541 QNVQPFATAQLLKETGGASNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEPAV 600
           QNVQPF TAQLLKETGG+SNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEPAV
Sbjct: 541 QNVQPFVTAQLLKETGGSSNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEPAV 600

Query: 601 PQLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSSS 660
           PQLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILS  
Sbjct: 601 PQLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSMQ 660

Query: 661 E 662
           E
Sbjct: 661 E 661

[Close]

BLAST of CmoCh18G013520.1 vs. ExPASy TrEMBL
Match: A0A5D3CIV3 (KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001500 PE=4 SV=1)

HSP 1 Score: 1177.2 bits (3044), Expect = 0.0e+00
Identity = 601/660 (91.06%), Postives = 628/660 (95.15%), Query Frame = 0


Query: 1   MEKSRSKRNYYYDHQDYDSEAMGRTRPRY-NNHYASNNYRHRGSAIRPSKPQDQPLMVTT 60
           MEKSRSKRNYYYDHQD+DSE+MGRTRPRY NNHY +NNYRHRG+A+RPSKPQDQ LMVTT
Sbjct: 1   MEKSRSKRNYYYDHQDFDSESMGRTRPRYNNNHYPNNNYRHRGNAVRPSKPQDQSLMVTT 60

Query: 61  TYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGR 120
           TYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGR
Sbjct: 61  TYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGR 120

Query: 121 MSSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGGG-NSRVATRL 180
           M SFSPAQEALFLIHERILESEMSPGFNGMGYG EDEEDDYG VRGG GGG   RVATRL
Sbjct: 121 MPSFSPAQEALFLIHERILESEMSPGFNGMGYGPEDEEDDYGGVRGGGGGGCGGRVATRL 180

Query: 181 VVSRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQIVGDANGVKK 240
           VVSRMHVGCLLGKGGKIIEQMRMETKTQIR+LPRDHNLP CI+MSEEIVQIVGD N VKK
Sbjct: 181 VVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGDTNAVKK 240

Query: 241 AIAIISSRLRESQHRDRSHFHGRLHSPERMFPPDDDYVPHTARRLSMDGRPFRPRISASN 300
           AIAI+SSRLRESQHRDRSHFHGRLHSPER+FPPDDDYVPH ARRL MDGRPFRPR+SASN
Sbjct: 241 AIAIVSSRLRESQHRDRSHFHGRLHSPERIFPPDDDYVPHNARRLPMDGRPFRPRMSASN 300

Query: 301 TRSNDYLNRHSSFSVEHGATPVNDNMMPFYGEDLVFRILCPIEKVDSVIGESDGIIELLR 360
           +R NDY NR S+F VE GA PVNDNMMPFYGEDLVFRILCPIEK+DSVIGES+GIIELLR
Sbjct: 301 SRGNDYSNRQSNFMVEPGAAPVNDNMMPFYGEDLVFRILCPIEKIDSVIGESNGIIELLR 360

Query: 361 NEVGVDIKVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTT 420
           N+VGVDIKVS P+TGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDK+NIVTT
Sbjct: 361 NDVGVDIKVSDPVTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKENIVTT 420

Query: 421 RLLVHSSDIGCLEGRDGSLLEMKRLTGANVQIVPREELPMFVSGADELVQIIGDIQAARD 480
           RLLV SSDIGCLEGRDGSLLEMKRLTGANV IVPRE+LPMFVSGADELVQIIGDI+AARD
Sbjct: 421 RLLVPSSDIGCLEGRDGSLLEMKRLTGANVHIVPREDLPMFVSGADELVQIIGDIKAARD 480

Query: 481 ALVELTSRLRSYICKEPYQKDASPPISALNTMVSLGLEESSSNNNAAAREVHSGNDSFST 540
           ALVELTSRLR+ + KEP+QKDASP +S  +TMVSLGLEESSSNNNAAAREVHSGNDS ST
Sbjct: 481 ALVELTSRLRNCLYKEPFQKDASPQVSVQSTMVSLGLEESSSNNNAAAREVHSGNDSAST 540

Query: 541 AYQNVQPFATAQLLKETGGASNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEP 600
           A+QNVQPF TAQLLKETGG+SNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEP
Sbjct: 541 AFQNVQPFGTAQLLKETGGSSNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEP 600

Query: 601 AVPQLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILS 659
           AVP+LITKSKNKLAQISELSGANV LVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILS
Sbjct: 601 AVPKLITKSKNKLAQISELSGANVMLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILS 660

[Close]

BLAST of CmoCh18G013520.1 vs. ExPASy TrEMBL
Match: A0A0A0L6Q2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238210 PE=4 SV=1)

HSP 1 Score: 1176.4 bits (3042), Expect = 0.0e+00
Identity = 601/663 (90.65%), Postives = 630/663 (95.02%), Query Frame = 0


Query: 1   MEKSRSKRNYYYDHQDYDSEAMGRTRPRY-NNHYASNNYRHRGSAIRPSKPQDQPLMVTT 60
           MEKSRSKRNYYYDHQD+DS++MGRTRPRY NNHY +NNYRHRG+A+RPSKPQDQ LMVTT
Sbjct: 1   MEKSRSKRNYYYDHQDFDSDSMGRTRPRYNNNHYPNNNYRHRGNAVRPSKPQDQSLMVTT 60

Query: 61  TYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGR 120
           TYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGR
Sbjct: 61  TYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGR 120

Query: 121 MSSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGGG-NSRVATRL 180
           M SFSPAQEALFLIHERILESEMSPGFNGMGYG EDEEDDYG VRGG GGG   RVATRL
Sbjct: 121 MPSFSPAQEALFLIHERILESEMSPGFNGMGYGPEDEEDDYGGVRGGGGGGCGGRVATRL 180

Query: 181 VVSRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQIVGDANGVKK 240
           VVSRMHVGCLLGKGGKIIEQMRMETKTQIR+LPRDHNLP CI+MSEEIVQIVGD N VKK
Sbjct: 181 VVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGDTNAVKK 240

Query: 241 AIAIISSRLRESQHRDRSHFHGRLHSPERMFPPDDDYVPHTARRLSMDGRPFRPRISASN 300
           AIAI+SSRLRESQHRDRSHFHGRLHSPER+FPP+DDYVPH ARRL MDGRPFRPR+SASN
Sbjct: 241 AIAIVSSRLRESQHRDRSHFHGRLHSPERIFPPEDDYVPHNARRLPMDGRPFRPRMSASN 300

Query: 301 TRSNDYLNRHSSFSVEHGATPVNDNMMPFYGEDLVFRILCPIEKVDSVIGESDGIIELLR 360
           TR NDY +R S+F VE GA PVNDNMMPFYGEDLVF+ILCPIEKVDSVIGES+GIIELLR
Sbjct: 301 TRGNDYSSRQSNFMVEPGAAPVNDNMMPFYGEDLVFKILCPIEKVDSVIGESNGIIELLR 360

Query: 361 NEVGVDIKVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTT 420
           N+VGVDIKVS P+TGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDK+NIVTT
Sbjct: 361 NDVGVDIKVSDPVTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKENIVTT 420

Query: 421 RLLVHSSDIGCLEGRDGSLLEMKRLTGANVQIVPREELPMFVSGADELVQIIGDIQAARD 480
           RLLV SSDIGCLEGRDGSLLEMKRLTGANV IVPRE+LPMFVSGADELVQIIGDI+AARD
Sbjct: 421 RLLVPSSDIGCLEGRDGSLLEMKRLTGANVHIVPREDLPMFVSGADELVQIIGDIKAARD 480

Query: 481 ALVELTSRLRSYICKEPYQKDASPPISALNTMVSLGLEESSSNNNAAAREVHSGNDSFST 540
           ALVELTSRLR+ + KEP+QKDASP +S  +TMVSLGLEESSSNNNAAAREVHSGNDS ST
Sbjct: 481 ALVELTSRLRNCLYKEPFQKDASPQVSVQSTMVSLGLEESSSNNNAAAREVHSGNDSAST 540

Query: 541 AYQNVQPFATAQLLKETGGASNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEP 600
           A+QNVQPF TAQLLKETGG+SNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEP
Sbjct: 541 AFQNVQPFGTAQLLKETGGSSNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEP 600

Query: 601 AVPQLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILS 660
           AVP+LITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILS
Sbjct: 601 AVPKLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILS 660

Query: 661 SSE 662
             E
Sbjct: 661 LQE 663

[Close]

BLAST of CmoCh18G013520.1 vs. ExPASy TrEMBL
Match: A0A6J1E5R0 (RNA-binding KH domain-containing protein RCF3-like OS=Cucurbita moschata OX=3662 GN=LOC111430831 PE=4 SV=1)

HSP 1 Score: 1176.0 bits (3041), Expect = 0.0e+00
Identity = 602/661 (91.07%), Postives = 627/661 (94.86%), Query Frame = 0


Query: 1   MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHYASNNYRHRGSAIRPSKPQDQPLMVTTT 60
           MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHYA+NNYRHRGSA+RP+KPQDQ LMVTTT
Sbjct: 1   MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHYANNNYRHRGSAVRPTKPQDQSLMVTTT 60

Query: 61  YRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRM 120
           YRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRM
Sbjct: 61  YRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRM 120

Query: 121 SSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGGGNSRVATRLVV 180
            SFSPAQEALFLIHERILESEMSPGFNGMGYG EDEEDDYG VRGGAGGG+SRVATRLVV
Sbjct: 121 PSFSPAQEALFLIHERILESEMSPGFNGMGYGPEDEEDDYGGVRGGAGGGSSRVATRLVV 180

Query: 181 SRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQIVGDANGVKKAI 240
           SRMHVGCLLGKGGKIIEQMRMETKTQIR+LPRDHNLP CI+MSEEIVQIVG+AN VKKA+
Sbjct: 181 SRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGEANAVKKAV 240

Query: 241 AIISSRLRESQHRDRSHFHGRLHSPERMFPPDDDYVPHTARRLSMDGRPFRPRISASNTR 300
           AI+SSRLRESQHR+RSHFHGRLHSPER+ PPDDDYVP  ARRLSMDGRPFRPRI  SNTR
Sbjct: 241 AIVSSRLRESQHRNRSHFHGRLHSPERILPPDDDYVPPIARRLSMDGRPFRPRI--SNTR 300

Query: 301 SNDYLNRHSSFSVEHGATPVNDNMMPFYGEDLVFRILCPIEKVDSVIGESDGIIELLRNE 360
            NDY NR S+F VE GA  VNDNMMPFYGEDLVFRILCPI+KVDSVIG+SDGIIELLR+E
Sbjct: 301 GNDYSNRQSNFLVEPGAASVNDNMMPFYGEDLVFRILCPIDKVDSVIGDSDGIIELLRDE 360

Query: 361 VGVDIKVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRL 420
           VGVDIKVS P+TGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRL
Sbjct: 361 VGVDIKVSDPVTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRL 420

Query: 421 LVHSSDIGCLEGRDGSLLEMKRLTGANVQIVPREELPMFVSGADELVQIIGDIQAARDAL 480
           LV SSDIGCLEGRDGSLLEMKRLTGANV IVPREELPMFVSGADELVQIIGDI+AARDA+
Sbjct: 421 LVPSSDIGCLEGRDGSLLEMKRLTGANVHIVPREELPMFVSGADELVQIIGDIKAARDAV 480

Query: 481 VELTSRLRSYICKEPYQKDASPPISALNTMVSLGLEESSSNNNAAAREVHSGNDSFSTAY 540
           VELTSRLR+Y+ KEP+QKDASPP+S  +TM SLGLEESSSNNNAAAREVHSGNDS  TAY
Sbjct: 481 VELTSRLRNYLYKEPFQKDASPPVSLPSTMGSLGLEESSSNNNAAAREVHSGNDSSITAY 540

Query: 541 QNVQPFATAQLLKETGGASNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEPAV 600
           QNVQPF T QLLKE GG+SNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPE AV
Sbjct: 541 QNVQPFGTPQLLKENGGSSNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEAAV 600

Query: 601 PQLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSSS 660
           P+LITKSKNKLAQISELSGANVTLVEDRPD TQKIIQISGTPEQAERAQSLLQGFILS  
Sbjct: 601 PKLITKSKNKLAQISELSGANVTLVEDRPDETQKIIQISGTPEQAERAQSLLQGFILSMQ 659

Query: 661 E 662
           E
Sbjct: 661 E 659

[Close]

BLAST of CmoCh18G013520.1 vs. TAIR 10
Match: AT5G53060.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 723.0 bits (1865), Expect = 2.2e-208
Identity = 409/677 (60.41%), Postives = 500/677 (73.86%), Query Frame = 0


Query: 1   MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHY-----ASNNYRHRGSA------IRPSK 60
           ME+SRSKRNY+YD QDYD ++M R++PRYNN+Y        N R+RG         RPSK
Sbjct: 1   MERSRSKRNYHYD-QDYDGDSMPRSKPRYNNNYHFGGGGGGNNRYRGGGGGGGGNGRPSK 60

Query: 61  PQDQPLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEIS 120
              +  M TTTYRILCHDAKAGGVIGKSG+IIKSIRQHTGAWINVHELVPGD ERIIEIS
Sbjct: 61  SHPE-TMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEIS 120

Query: 121 DTRRRDPEGRMSSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGG 180
           D RRRDP+GRM SFSPAQEALF +H+RILESE   G+ G      +EE+DYG VR G G 
Sbjct: 121 DNRRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGG---PPPEEEEDYGGVRPGGG- 180

Query: 181 GNSRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQI 240
              RV TRLVVSRMHVGCLLGKGGKIIEQMR+ETKT IR+LPR+ NLP C+++SEEIVQI
Sbjct: 181 ---RVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQI 240

Query: 241 VGDANGVKKAIAIISSRLRESQHRDRSHFHGRLHSPERMF-PPDDDYVPHTARRLSMDGR 300
           VG+ N VK A+AI+SSRLRESQHRDRS+F GR HSPER F    DDY+P   R+ S    
Sbjct: 241 VGELNAVKNALAIVSSRLRESQHRDRSNFQGRSHSPERSFAAAGDDYMPQLRRQSS---- 300

Query: 301 PFRPRISASNTRSNDYLNRHSSFSVEHGATPVNDNMMPFYGEDLVFRILCPIEKVDSVIG 360
               R    N R+N++ +R S+++ E  A PV +N+   Y E+LVF+ILCP +K+  V+G
Sbjct: 301 ---DRFPRGNFRNNNFSSRQSNYAEEAPAVPVGENV---YSEELVFQILCPADKIVRVVG 360

Query: 361 ESDGIIELLRNEVGVDIKVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDL 420
           ES GII+LL+NE+GVD++VS P+ GS+EQI+ ISS+E PDD  FPAQEALLHIQT+I+DL
Sbjct: 361 ESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDDPFFPAQEALLHIQTQIIDL 420

Query: 421 VPDKDNIVTTRLLVHSSDIGCLEGRDGSLLEMKRLTGANVQIVPREELPMFVSGADELVQ 480
           +PDKDN++TTRLLV S D  CLEG+ GS+ E+ RLTG +VQI+ REE+P   S  D ++Q
Sbjct: 421 IPDKDNLITTRLLVPSRDSICLEGKAGSVSEISRLTGTSVQILAREEIPRCASINDVVIQ 480

Query: 481 IIGDIQAARDALVELTSRLRSYICKEPYQKDASPPISALNTMVSLG----LEESSSNNNA 540
           I G+I+AAR+ALVELT  LRS++ KE  QK+ +PP S   T    G    +E +SSNN  
Sbjct: 481 ITGEIRAAREALVELTLLLRSHMFKELSQKE-TPPASTSTTGPLEGVAGVMEVASSNNTI 540

Query: 541 AAREVHSGNDSFSTAYQNVQPFATAQLLKETGGASNETGTQNENDRREDLPSGLNRIPVP 600
            +RE   G  S +   Q V         KE  G+  + G   E++ RE++P   +R+ VP
Sbjct: 541 QSRE---GPTSSNLNLQQVSTILPQ--FKEGFGSVAKAG---ESEHREEVPVTTSRMAVP 600

Query: 601 LVTRSTLEVVIPEPAVPQLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQ 660
           LVTRSTLEVV+PE  VP+L+TKS+NKLAQISE SGA+VT+VEDRP+ TQ II+ISGTPEQ
Sbjct: 601 LVTRSTLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQ 649

Query: 661 AERAQSLLQGFILSSSE 662
           AERAQSLLQGFILS  E
Sbjct: 661 AERAQSLLQGFILSIQE 649

[Close]

BLAST of CmoCh18G013520.1 vs. TAIR 10
Match: AT5G53060.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 243.4 bits (620), Expect = 5.1e-64
Identity = 135/200 (67.50%), Postives = 151/200 (75.50%), Query Frame = 0


Query: 1   MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHY-----ASNNYRHRGSA------IRPSK 60
           ME+SRSKRNY+YD QDYD ++M R++PRYNN+Y        N R+RG         RPSK
Sbjct: 1   MERSRSKRNYHYD-QDYDGDSMPRSKPRYNNNYHFGGGGGGNNRYRGGGGGGGGNGRPSK 60

Query: 61  PQDQPLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEIS 120
              +  M TTTYRILCHDAKAGGVIGKSG+IIKSIRQHTGAWINVHELVPGD ERIIEIS
Sbjct: 61  SHPE-TMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEIS 120

Query: 121 DTRRRDPEGRMSSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGG 180
           D RRRDP+GRM SFSPAQEALF +H+RILESE   G+ G      +EE+DYG VR G G 
Sbjct: 121 DNRRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGG---PPPEEEEDYGGVRPGGG- 180

Query: 181 GNSRVATRLVVSRMHVGCLL 190
              RV TRLVVSRMHVGCLL
Sbjct: 181 ---RVVTRLVVSRMHVGCLL 191

[Close]

BLAST of CmoCh18G013520.1 vs. TAIR 10
Match: AT5G15270.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 227.3 bits (578), Expect = 3.8e-59
Identity = 162/489 (33.13%), Postives = 253/489 (51.74%), Query Frame = 0


Query: 13  DHQDYDSEAMGRTRPRYNNHYASNNYRHRGSAIRPSKPQDQPLMV----TTTYRILCHDA 72
           DH+D   +   R+RP+       ++Y   G + R  +  D+  +V     T +R LC   
Sbjct: 10  DHRDSHRK---RSRPQ-------SDYDDNGGSKRRYRGDDRDSLVIDRDDTVFRYLCPVK 69

Query: 73  KAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEI---SDTRRRDPEGRMSSFSP 132
           K G VIG+ G I+K +R  T + I + E +PG +ER+I I   SD      +G     SP
Sbjct: 70  KIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDGE-KVLSP 129

Query: 133 AQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGGGNSRVATRLVVSRMHV 192
           AQ+ALF IH+R++  +           A  E+   GE          +V  +L+V    +
Sbjct: 130 AQDALFRIHDRVVADD-----------ARSEDSPEGE---------KQVTAKLLVPSDQI 189

Query: 193 GCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQIVGDANGVKKAIAIISS 252
           GC+LG+GG+I++ +R ET  QIR++ +D N+P C   S+E++QI G+   VKKA+  I+S
Sbjct: 190 GCILGRGGQIVQNIRSETGAQIRIV-KDRNMPLCALNSDELIQISGEVLIVKKALLQIAS 249

Query: 253 RLRESQHRDRSHFHGRLHSPERMFPPDDDYVPHTARRLSMDGRPFRPRISASNTRSNDYL 312
           RL E+  R ++     L S    +P             S+      PR+         Y 
Sbjct: 250 RLHENPSRSQN-----LLSSSGGYPAG-----------SLMSHAGGPRLVGLAPLMGSYG 309

Query: 313 NRHSSFSVEHGATPVNDNMMPFYGEDLVFRILCPIEKVDSVIGESDGIIELLRNEVGVDI 372
                +S      P ND        +   R++ P+E + SVIG+   +I  LR E    I
Sbjct: 310 RDAGDWSRPLYQPPRNDPP----ATEFFIRLVSPVENIASVIGKGGALINQLRQETRATI 369

Query: 373 KVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIV--TTRLLVH 432
           KV S  T  N+ ++ IS+ E  +D   P  EA++ +Q +  D V     +V  TTRLLV 
Sbjct: 370 KVDSSRTEGNDCLITISAREVFEDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVP 429

Query: 433 SSDIGCLEGRDGSLL-EMKRLTGANVQIVPREELPMFVSGADELVQIIGDIQAARDALVE 492
           SS IGC+ G+ G+++ EM+R+T AN++I+ +E LP   S  DE+VQI G++  A++AL++
Sbjct: 430 SSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQ 446

[Close]

BLAST of CmoCh18G013520.1 vs. TAIR 10
Match: AT5G15270.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 227.3 bits (578), Expect = 3.8e-59
Identity = 162/489 (33.13%), Postives = 253/489 (51.74%), Query Frame = 0


Query: 13  DHQDYDSEAMGRTRPRYNNHYASNNYRHRGSAIRPSKPQDQPLMV----TTTYRILCHDA 72
           DH+D   +   R+RP+       ++Y   G + R  +  D+  +V     T +R LC   
Sbjct: 10  DHRDSHRK---RSRPQ-------SDYDDNGGSKRRYRGDDRDSLVIDRDDTVFRYLCPVK 69

Query: 73  KAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEI---SDTRRRDPEGRMSSFSP 132
           K G VIG+ G I+K +R  T + I + E +PG +ER+I I   SD      +G     SP
Sbjct: 70  KIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDGE-KVLSP 129

Query: 133 AQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGGGNSRVATRLVVSRMHV 192
           AQ+ALF IH+R++  +           A  E+   GE          +V  +L+V    +
Sbjct: 130 AQDALFRIHDRVVADD-----------ARSEDSPEGE---------KQVTAKLLVPSDQI 189

Query: 193 GCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQIVGDANGVKKAIAIISS 252
           GC+LG+GG+I++ +R ET  QIR++ +D N+P C   S+E++QI G+   VKKA+  I+S
Sbjct: 190 GCILGRGGQIVQNIRSETGAQIRIV-KDRNMPLCALNSDELIQISGEVLIVKKALLQIAS 249

Query: 253 RLRESQHRDRSHFHGRLHSPERMFPPDDDYVPHTARRLSMDGRPFRPRISASNTRSNDYL 312
           RL E+  R ++     L S    +P             S+      PR+         Y 
Sbjct: 250 RLHENPSRSQN-----LLSSSGGYPAG-----------SLMSHAGGPRLVGLAPLMGSYG 309

Query: 313 NRHSSFSVEHGATPVNDNMMPFYGEDLVFRILCPIEKVDSVIGESDGIIELLRNEVGVDI 372
                +S      P ND        +   R++ P+E + SVIG+   +I  LR E    I
Sbjct: 310 RDAGDWSRPLYQPPRNDPP----ATEFFIRLVSPVENIASVIGKGGALINQLRQETRATI 369

Query: 373 KVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIV--TTRLLVH 432
           KV S  T  N+ ++ IS+ E  +D   P  EA++ +Q +  D V     +V  TTRLLV 
Sbjct: 370 KVDSSRTEGNDCLITISAREVFEDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVP 429

Query: 433 SSDIGCLEGRDGSLL-EMKRLTGANVQIVPREELPMFVSGADELVQIIGDIQAARDALVE 492
           SS IGC+ G+ G+++ EM+R+T AN++I+ +E LP   S  DE+VQI G++  A++AL++
Sbjct: 430 SSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQ 446

[Close]

BLAST of CmoCh18G013520.1 vs. TAIR 10
Match: AT1G51580.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 195.7 bits (496), Expect = 1.2e-49
Identity = 174/642 (27.10%), Postives = 293/642 (45.64%), Query Frame = 0


Query: 61  YRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVP-GDEERIIEI--SDTRRRDPE 120
           +R+LC   + G +IGK GS+I+ ++  TG+ I V + +P   EER++ I     +++D  
Sbjct: 21  FRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKKKDES 80

Query: 121 GRMSSFSPAQEALFLIHERILESEMSPGFNGMG-YGAEDEE------------------- 180
               S +P  E          E +   G    G  G +DEE                   
Sbjct: 81  NVCDSENPGSE----------EPKQEKGSECAGTSGGDDEEAPSSAQMALLRVFERIVFG 140

Query: 181 DDYGEVRGG-AGGGNSRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNL 240
           DD   V G     G S    R++V    V  L+ KGGK+I+++R ++   +R+   D  +
Sbjct: 141 DDAATVDGDELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTD-QI 200

Query: 241 PSCITMSEEIVQIVGDANGVKKAIAIISSRLRES---QHRDRSHFHGRLHSPERMFPPDD 300
           P C    + ++Q+ G  + VKKA+ ++++ L+ES      D   F      P+  +PP+ 
Sbjct: 201 PPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQESGAPPTWDECPF------PQPGYPPEY 260

Query: 301 DYVPHTARRLSMDGRPFRPRISASNTRSNDYLNRHSSFSVEHGATPVNDNMMPFYGEDLV 360
             + +  +    D  P  P                    +     P N    P   E++ 
Sbjct: 261 HSMEYHPQ---WDHPPPNP--------------------MPEDVGPFN---RPVVEEEVA 320

Query: 361 FRILCPIEKVDSVIGESDGIIELLRNEVGVDIKVSSPMTGSNEQILIISSDEGPDDELFP 420
           FR+LCP +KV S+IG+   ++  L+NE G  IKVS P   S E+I++IS+ E  +     
Sbjct: 321 FRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERRHSL 380

Query: 421 AQEALLHIQTRIVDLVPDKDNIVTTRLLVHSSDIGCLEGRDGSLL-EMKRLTGANVQIVP 480
           AQ+ ++ +  RIV++  +    V  RLLVHS  IG L G+ G L+ EM+R TGA++++  
Sbjct: 381 AQDGVMRVHNRIVEIGFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFA 440

Query: 481 REELPMFVSGADELVQIIGDIQAARDALVELTSRLRS--YICKEPYQKDASPPISALNTM 540
           +++   + S  DE+VQ+IG+++  +DAL ++  RLR   +  + P+Q    PP   +   
Sbjct: 441 KDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFPGRLPFQGMGGPPPPFMGPY 500

Query: 541 VSLGLEESSSNNNAAAREVHSGNDSFSTAYQNVQPF-----------ATAQLLKETGGAS 600
                        A+    HS    F   + +   F            +        G  
Sbjct: 501 PEPPPPFGPRQYPASPDRYHSPVGPFHERHCHGPGFDRPPGPGFDRPPSPMSWTPQPGID 560

Query: 601 NETGTQNENDRREDLPSGLNRIPV----PLVTRSTLEVVIPEPAVPQLITKSKNKLAQIS 658
              G     D        L   P+    P++T + +E+VIP+  +  +  ++ + L  I 
Sbjct: 561 GHPGGMVPPDVNHGF--ALRNEPIGSENPVMTSANVEIVIPQAYLGHVYGENCSNLNYIK 617

The following BLAST results are available for this feature:

BLAST of CmoCh18G013520.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W4B1	3.1e-207	60.41	RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana OX=3702 GN...	[more]
F4KDN0	3.4e-44	24.30	KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 S...	[more]
P58223	7.3e-39	27.04	KH domain-containing protein At4g18375 OS=Arabidopsis thaliana OX=3702 GN=At4g18...	[more]
Q9SR13	2.4e-18	23.41	Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV...	[more]
Q9SZH4	7.1e-18	25.40	RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmoCh18G013520.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1J7	0.0e+00	99.70	RNA-binding KH domain-containing protein RCF3-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HSU9	0.0e+00	98.03	RNA-binding KH domain-containing protein RCF3-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A5D3CIV3	0.0e+00	91.06	KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0L6Q2	0.0e+00	90.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238210 PE=4 SV=1	[more]
A0A6J1E5R0	0.0e+00	91.07	RNA-binding KH domain-containing protein RCF3-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of CmoCh18G013520.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53060.1	2.2e-208	60.41	RNA-binding KH domain-containing protein	[more]
AT5G53060.2	5.1e-64	67.50	RNA-binding KH domain-containing protein	[more]
AT5G15270.2	3.8e-59	33.13	RNA-binding KH domain-containing protein	[more]
AT5G15270.1	3.8e-59	33.13	RNA-binding KH domain-containing protein	[more]
AT1G51580.1	1.2e-49	27.10	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 587..657 e-value: 0.0059 score: 25.8 coord: 414..488 e-value: 0.29 score: 20.2 coord: 57..138 e-value: 5.7E-7 score: 39.2 coord: 172..248 e-value: 1.7E-7 score: 40.9 coord: 330..403 e-value: 0.98 score: 15.7
None	No IPR available	GENE3D	3.30.310.210		coord: 330..491 e-value: 4.7E-22 score: 80.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 556..580
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 3..573
None	No IPR available	PANTHER	PTHR10288:SF134	RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3	coord: 3..573
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 331..398 score: 9.917264
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 588..652 score: 12.705369
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 173..243 score: 14.130867
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 58..130 score: 12.495737
None	No IPR available	CDD	cd00105	KH-I	coord: 590..653 e-value: 5.75492E-9 score: 50.6363
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 177..244 e-value: 2.64335E-15 score: 68.6571
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 60..134 e-value: 3.56488E-19 score: 79.8279
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 587..658 e-value: 8.1E-11 score: 43.4
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 57..140 e-value: 9.5E-16 score: 59.3
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 171..252 e-value: 7.3E-16 score: 59.7
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 324..384
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 170..254
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 580..658
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 54..111
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 408..496
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 60..109 e-value: 4.5E-10 score: 39.2 coord: 590..653 e-value: 1.8E-7 score: 30.9 coord: 176..244 e-value: 2.4E-11 score: 43.3

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh18G013520	CmoCh18G013520	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G013520.1:exon:4589	CmoCh18G013520.1:exon:4589	exon
CmoCh18G013520.1:exon:4588	CmoCh18G013520.1:exon:4588	exon
CmoCh18G013520.1:exon:4587	CmoCh18G013520.1:exon:4587	exon
CmoCh18G013520.1:exon:4586	CmoCh18G013520.1:exon:4586	exon
CmoCh18G013520.1:exon:4585	CmoCh18G013520.1:exon:4585	exon
CmoCh18G013520.1:exon:4584	CmoCh18G013520.1:exon:4584	exon
CmoCh18G013520.1:exon:4583	CmoCh18G013520.1:exon:4583	exon
CmoCh18G013520.1:exon:4582	CmoCh18G013520.1:exon:4582	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G013520.1:cds	CmoCh18G013520.1:cds_8	CDS
CmoCh18G013520.1:cds	CmoCh18G013520.1:cds_7	CDS
CmoCh18G013520.1:cds	CmoCh18G013520.1:cds_6	CDS
CmoCh18G013520.1:cds	CmoCh18G013520.1:cds_5	CDS
CmoCh18G013520.1:cds	CmoCh18G013520.1:cds_4	CDS
CmoCh18G013520.1:cds	CmoCh18G013520.1:cds_3	CDS
CmoCh18G013520.1:cds	CmoCh18G013520.1:cds_2	CDS
CmoCh18G013520.1:cds	CmoCh18G013520.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G013520.1:five_prime_utr	CmoCh18G013520.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh18G013520.1	CmoCh18G013520.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0016740	transferase activity