CmoCh18G013280.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G013280.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor SPEECHLESS-like
Location	Cmo_Chr18: 12635767 .. 12637378 (+)
Sequence length	1065
RNA-Seq Expression	CmoCh18G013280.1
Synteny	CmoCh18G013280.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCTAGTTTAGCTCAATTTTGCCAACCAAATCAAGAATTTGTCGATAATACAACTCCCCATCTCCAAGGAGATGACCTCTTCAGTATCTTTGAGAGTTTGGAGAGTGTTGCCGAGTTCAGTATGATCGAGGACGATATCGAACCAACCAAAGACGGCGAGGAGACCACAAGCTTGGTTTTCTCCGAGACTGAGCTCGAGGCTTCGCCGAAAACAAAGCGATTGAAGACGACAACGACAACGACAATGGCAAAGGCTTCTCCCTTGGAGGAAGCAAACCCTGATGGAACTCAAAGAATTTCCCACATTACGGTGGAGCGCAACCGTAGGAAGCAAATGAACGAGCATTTGTCTATCTTGAGGACCCTCATGCCTTGCTTCTATGTCAAAAAAGTAAGCAATATCAAAAATGTGTTCAAATTTTTACTCTTTTTTTCATAAGGGTTTTGTGAATTGTTGTTGATTGTGACGTTGGGATTTTAGGGAGATCAAGCTTCAATAATTGGAGGGGTGGTGGAATACATCAAGGAGTTGCAACAAGTTCTTCAATCACTGGAGGCCAAGAGGCAAAGGAAAGTTTATAGTGAAGGGTTGAGCCCTAGGGTAGTTTCAAGTCCAAGGCCTAATTTACAAATGAGTCCAAGAAAACCACCACTAAGTCCTCGCCTTAACTTGCCAATTAGCCCAAGAACTCCACAACCCACTAGCCCTTACACCAAGCCTCCAAGGTTGCAACAACCTCCCACCACCGTGGCCGCCGCCACCGCAAGCAGCGGCTGCACCACCAATATGGCTAACAACAACAACTCATTAGAGCCATCCCCTTGTAATTCATCTTCAACCACATATTCCTCCATTGACAATGCTAACAATGCCAACAATGATCTTGTGGCCAATTCAAAATCAGCCATAGCTGAAGTTGAGGTGAAGTTCACAGGTCCAAATGTGGTTTTGAAGACAGTTTCTCCTCCAATTCCTGGGCAAGCTGTGAAGATCATTTCTGCACTTGAGCACCTCTCCCTTGAAATTCTCCATGTCAAGATCACCACACTTGATCAAACCATGATTAACTCTTTCACAATTAAGGTATACACAAACAACAACAACACCAATAAAGTTTCAAGCTTTCATCCTTAACTTCATAACCCATTAAGTAATTCTTTGTTCTTATTGATTTTAAGTTGATTAAAGTAAAAAATTTCTTCTGGGTATCTCAAAAGTAAAAGTCTTTTTTCCCTTATGTGTTATATTTGCTTTTGTGTATCAAAACTTTTAGCACAAGCACCAAAGCACTCCATTTCTTGGCATGTTCAAGGTTTGTTTAGGCTCACAGATGGCTTCCATGCATGGACAAAAATGGCTCGAATTTCAGAGATGAAATGGTAGCTCTTTTGCATGTTTTCAGAGGAGAAAGCCCTCAAATTTACGCCCAAATTTGGATATCTTTTCTTGATTTTTGTTGCTATCTTCCATGATGATCTTTAGTTTTGATAGCTATGATGATGATTGTAATATGGGTTCTTTTTGGTTCTTTAATTTATAGATTGGAATTGAATGCCAACTTAGTGCGGAGGAACTGGCTCACCAAATTCAGCAAACATTCTGCTAA

mRNA sequence

ATGGTTGCTAGTTTAGCTCAATTTTGCCAACCAAATCAAGAATTTGTCGATAATACAACTCCCCATCTCCAAGGAGATGACCTCTTCAGTATCTTTGAGAGTTTGGAGAGTGTTGCCGAGTTCAGTATGATCGAGGACGATATCGAACCAACCAAAGACGGCGAGGAGACCACAAGCTTGGTTTTCTCCGAGACTGAGCTCGAGGCTTCGCCGAAAACAAAGCGATTGAAGACGACAACGACAACGACAATGGCAAAGGCTTCTCCCTTGGAGGAAGCAAACCCTGATGGAACTCAAAGAATTTCCCACATTACGGTGGAGCGCAACCGTAGGAAGCAAATGAACGAGCATTTGTCTATCTTGAGGACCCTCATGCCTTGCTTCTATGTCAAAAAAGGAGATCAAGCTTCAATAATTGGAGGGGTGGTGGAATACATCAAGGAGTTGCAACAAGTTCTTCAATCACTGGAGGCCAAGAGGCAAAGGAAAGTTTATAGTGAAGGGTTGAGCCCTAGGGTAGTTTCAAGTCCAAGGCCTAATTTACAAATGAGTCCAAGAAAACCACCACTAAGTCCTCGCCTTAACTTGCCAATTAGCCCAAGAACTCCACAACCCACTAGCCCTTACACCAAGCCTCCAAGGTTGCAACAACCTCCCACCACCGTGGCCGCCGCCACCGCAAGCAGCGGCTGCACCACCAATATGGCTAACAACAACAACTCATTAGAGCCATCCCCTTGTAATTCATCTTCAACCACATATTCCTCCATTGACAATGCTAACAATGCCAACAATGATCTTGTGGCCAATTCAAAATCAGCCATAGCTGAAGTTGAGGTGAAGTTCACAGGTCCAAATGTGGTTTTGAAGACAGTTTCTCCTCCAATTCCTGGGCAAGCTGTGAAGATCATTTCTGCACTTGAGCACCTCTCCCTTGAAATTCTCCATGTCAAGATCACCACACTTGATCAAACCATGATTAACTCTTTCACAATTAAGATTGGAATTGAATGCCAACTTAGTGCGGAGGAACTGGCTCACCAAATTCAGCAAACATTCTGCTAA

Coding sequence (CDS)

ATGGTTGCTAGTTTAGCTCAATTTTGCCAACCAAATCAAGAATTTGTCGATAATACAACTCCCCATCTCCAAGGAGATGACCTCTTCAGTATCTTTGAGAGTTTGGAGAGTGTTGCCGAGTTCAGTATGATCGAGGACGATATCGAACCAACCAAAGACGGCGAGGAGACCACAAGCTTGGTTTTCTCCGAGACTGAGCTCGAGGCTTCGCCGAAAACAAAGCGATTGAAGACGACAACGACAACGACAATGGCAAAGGCTTCTCCCTTGGAGGAAGCAAACCCTGATGGAACTCAAAGAATTTCCCACATTACGGTGGAGCGCAACCGTAGGAAGCAAATGAACGAGCATTTGTCTATCTTGAGGACCCTCATGCCTTGCTTCTATGTCAAAAAAGGAGATCAAGCTTCAATAATTGGAGGGGTGGTGGAATACATCAAGGAGTTGCAACAAGTTCTTCAATCACTGGAGGCCAAGAGGCAAAGGAAAGTTTATAGTGAAGGGTTGAGCCCTAGGGTAGTTTCAAGTCCAAGGCCTAATTTACAAATGAGTCCAAGAAAACCACCACTAAGTCCTCGCCTTAACTTGCCAATTAGCCCAAGAACTCCACAACCCACTAGCCCTTACACCAAGCCTCCAAGGTTGCAACAACCTCCCACCACCGTGGCCGCCGCCACCGCAAGCAGCGGCTGCACCACCAATATGGCTAACAACAACAACTCATTAGAGCCATCCCCTTGTAATTCATCTTCAACCACATATTCCTCCATTGACAATGCTAACAATGCCAACAATGATCTTGTGGCCAATTCAAAATCAGCCATAGCTGAAGTTGAGGTGAAGTTCACAGGTCCAAATGTGGTTTTGAAGACAGTTTCTCCTCCAATTCCTGGGCAAGCTGTGAAGATCATTTCTGCACTTGAGCACCTCTCCCTTGAAATTCTCCATGTCAAGATCACCACACTTGATCAAACCATGATTAACTCTTTCACAATTAAGATTGGAATTGAATGCCAACTTAGTGCGGAGGAACTGGCTCACCAAATTCAGCAAACATTCTGCTAA

Protein sequence

MVASLAQFCQPNQEFVDNTTPHLQGDDLFSIFESLESVAEFSMIEDDIEPTKDGEETTSLVFSETELEASPKTKRLKTTTTTTMAKASPLEEANPDGTQRISHITVERNRRKQMNEHLSILRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPRVVSSPRPNLQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPTTVAAATASSGCTTNMANNNNSLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKTVSPPIPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIECQLSAEELAHQIQQTFC

Homology

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BLAST of CmoCh18G013280.1 vs. ExPASy Swiss-Prot
Match: Q700C7 (Transcription factor SPEECHLESS OS=Arabidopsis thaliana OX=3702 GN=SPCH PE=1 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.7e-84
Identity = 205/363 (56.47%), Postives = 251/363 (69.15%), Query Frame = 0


Query: 14  EFVDNTTPHLQGDDLFSIFESLESVAEFSMIEDDIEPTKDGEETTSLVFSETELE-ASPK 73
           EFVD +   L GDDLF+I ESLE   E S         KDG  ++  +  + + E +SPK
Sbjct: 13  EFVDTS---LAGDDLFAILESLEGAGEIS--PTAASTPKDGTTSSKELVKDQDYENSSPK 72

Query: 74  TKRLKTTTTTTM------AKASPLEEANPDGTQRISHITVERNRRKQMNEHLSILRTLMP 133
            K+ +  T                E+   DG Q++SH+TVERNRRKQMNEHL++LR+LMP
Sbjct: 73  RKKQRLETRKEEDEEEEDGDGEAEEDNKQDGQQKMSHVTVERNRRKQMNEHLTVLRSLMP 132

Query: 134 CFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPRVVSSPRPNLQ-MSP 193
           CFYVK+GDQASIIGGVVEYI ELQQVLQSLEAK+QRK Y+E LSPRVV SPRP+   +SP
Sbjct: 133 CFYVKRGDQASIIGGVVEYISELQQVLQSLEAKKQRKTYAEVLSPRVVPSPRPSPPVLSP 192

Query: 194 RKPPLSPRLN----------LPISPRTPQPTSPYTK-PPRL---QQPPTTVAAATASSGC 253
           RKPPLSPR+N           PISPRTPQPTSPY   PP+L    QPP    ++ AS   
Sbjct: 193 RKPPLSPRINHHQIHHHLLLPPISPRTPQPTSPYRAIPPQLPLIPQPPLRSYSSLAS--- 252

Query: 254 TTNMANNNNSLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKT 313
               ++  +    SP +SSS+   S ++ ++  N+LVANSKSA+A+VEVKF+G NV+LKT
Sbjct: 253 ---CSSLGDPPPYSPASSSSSPSVSSNHESSVINELVANSKSALADVEVKFSGANVLLKT 312

Query: 314 VSPPIPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIECQLSAEELAHQIQQ 355
           VS  IPGQ +KII+ALE L+LEIL V I T+D+TM+NSFTIKIGIECQLSAEELA QIQQ
Sbjct: 313 VSHKIPGQVMKIIAALEDLALEILQVNINTVDETMLNSFTIKIGIECQLSAEELAQQIQQ 364

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BLAST of CmoCh18G013280.1 vs. ExPASy Swiss-Prot
Match: Q9M8K6 (Transcription factor MUTE OS=Arabidopsis thaliana OX=3702 GN=MUTE PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.7e-35
Identity = 98/257 (38.13%), Postives = 143/257 (55.64%), Query Frame = 0


Query: 101 ISHITVERNRRKQMNEHLSILRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKR 160
           +SHI VERNRR+QMNEHL  LR+L PCFY+K+GDQASIIGGV+E+IKELQQ++Q LE+K+
Sbjct: 1   MSHIAVERNRRRQMNEHLKSLRSLTPCFYIKRGDQASIIGGVIEFIKELQQLVQVLESKK 60

Query: 161 QRKVYSEGLSPRVVSSPRPNLQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPT 220
           +RK  +                                     +P+ PY           
Sbjct: 61  RRKTLN-------------------------------------RPSFPY----------- 120

Query: 221 TVAAATASSGCTTNMANNNNSLEPSPCNSSST--TYSSIDNANNAN--NDLVANSKSAIA 280
                            ++ ++EPS   +++T   +S I+N    +   ++ A   S  A
Sbjct: 121 -----------------DHQTIEPSSLGAATTRVPFSRIENVMTTSTFKEVGACCNSPHA 180

Query: 281 EVEVKFTGPNVVLKTVSPPIPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGI 340
            VE K +G NVVL+ VS  I GQ VKIIS LE LS ++LH+ I+++++T++  F +KIG+
Sbjct: 181 NVEAKISGSNVVLRVVSRRIVGQLVKIISVLEKLSFQVLHLNISSMEETVLYFFVVKIGL 192

Query: 341 ECQLSAEELAHQIQQTF 354
           EC LS EEL  ++Q++F
Sbjct: 241 ECHLSLEELTLEVQKSF 192

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BLAST of CmoCh18G013280.1 vs. ExPASy Swiss-Prot
Match: Q56YJ8 (Transcription factor FAMA OS=Arabidopsis thaliana OX=3702 GN=FAMA PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.8e-31
Identity = 104/300 (34.67%), Postives = 150/300 (50.00%), Query Frame = 0


Query: 54  GEETTSLVFSETELEASPKTKRLKTTTTTTMAKASPLEEANPDGTQRISHITVERNRRKQ 113
           GEE      + T+ E   K KR +T+ T+        EE     +QR++HI VERNRRKQ
Sbjct: 161 GEEEDRENKNVTKKEVKSKRKRARTSKTS--------EEVE---SQRMTHIAVERNRRKQ 220

Query: 114 MNEHLSILRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPRV 173
           MNEHL +LR+LMP  YV++GDQASIIGG +E+++EL+Q+LQ LE++++R++  E      
Sbjct: 221 MNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGE------ 280

Query: 174 VSSPRPNLQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPTTVAAATASSGCTT 233
                                   ++  T   +SP T      QP       T   G   
Sbjct: 281 --------------------TGRDMTTTTTSSSSPITTVANQAQPLIITGNVTELEG--- 340

Query: 234 NMANNNNSLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKTVS 293
                                           +  A +KS +A+VEVK  G + ++K +S
Sbjct: 341 ---------------------------GGGLREETAENKSCLADVEVKLLGFDAMIKILS 393

Query: 294 PPIPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIECQLSAEELAHQIQQTF 353
              PGQ +K I+ALE L L ILH  ITT++QT++ SF +KI  E + +AE++A  IQQ F
Sbjct: 401 RRRPGQLIKTIAALEDLHLSILHTNITTMEQTVLYSFNVKITSETRFTAEDIASSIQQIF 393

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BLAST of CmoCh18G013280.1 vs. ExPASy Swiss-Prot
Match: Q9C7T4 (Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-17
Identity = 72/254 (28.35%), Postives = 117/254 (46.06%), Query Frame = 0


Query: 99  QRISHITVERNRRKQMNEHLSILRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEA 158
           QR++HI VERNRRKQMNE+L++LR+LMP +Y ++GDQASI+GG + Y+KEL+  LQS+E 
Sbjct: 123 QRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQASIVGGAINYLKELEHHLQSME- 182

Query: 159 KRQRKVYSEGLSPRVVSSPRPNLQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQP 218
                               P ++ +              S  +  P S +   P+    
Sbjct: 183 --------------------PPVKTATEDTGAGHDQTKTTSASSSGPFSDFFAFPQYSNR 242

Query: 219 PTTVAAATASSGCTTNMANNNNSLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEV 278
           PT+ AAA                                                 +AE+
Sbjct: 243 PTSAAAA-----------------------------------------------EGMAEI 302

Query: 279 EVKFTGPNVVLKTVSPPIPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIEC 338
           EV     +  LK ++   P Q +K++S+++ L L +LH+ +TT D +++ S ++K+    
Sbjct: 303 EVTMVESHASLKILAKKRPRQLLKLVSSIQSLRLTLLHLNVTTRDDSVLYSISVKVEEGS 308

Query: 339 QL-SAEELAHQIQQ 352
           QL + E++A  + Q
Sbjct: 363 QLNTVEDIAAAVNQ 308

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BLAST of CmoCh18G013280.1 vs. ExPASy Swiss-Prot
Match: Q9SK91 (Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 5.4e-17
Identity = 83/298 (27.85%), Postives = 131/298 (43.96%), Query Frame = 0


Query: 56  ETTSLVFSETELEASPKTKRLKTTTTTTMAKASPLEEANPDGTQRISHITVERNRRKQMN 115
           E   L   + E    P+ +R +  T     K    EE      QR++HI VERNRRKQMN
Sbjct: 77  EELGLTAIDVESHPPPQHRRKRRRTRNCKNK----EEIE---NQRMTHIAVERNRRKQMN 136

Query: 116 EHLSILRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPRVVS 175
           E+L++LR+LMP  Y ++GDQASI+GG + Y+KEL+ +LQS+E KR               
Sbjct: 137 EYLAVLRSLMPSSYAQRGDQASIVGGAINYVKELEHILQSMEPKR--------------- 196

Query: 176 SPRPNLQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPTTVAAATASSGCTTNM 235
                                    RT  P    T    L  P                 
Sbjct: 197 ------------------------TRTHDPKGDKTSTSSLVGP----------------- 256

Query: 236 ANNNNSLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKTVSPP 295
                           T + S    +  ++  V  S S+ AE+EV     +  +K ++  
Sbjct: 257 ---------------FTDFFSFPQYSTKSSSDVPESSSSPAEIEVTVAESHANIKIMTKK 296

Query: 296 IPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIECQL-SAEELAHQIQQT 353
            P Q +K+I++L+ L L +LH+ +TTL  +++ S ++++    QL + +++A  + QT
Sbjct: 317 KPRQLLKLITSLQSLRLTLLHLNVTTLHNSILYSISVRVEEGSQLNTVDDIATALNQT 296

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BLAST of CmoCh18G013280.1 vs. ExPASy TrEMBL
Match: A0A6J1G099 (transcription factor SPEECHLESS-like OS=Cucurbita moschata OX=3662 GN=LOC111449504 PE=4 SV=1)

HSP 1 Score: 664.8 bits (1714), Expect = 1.9e-187
Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 0


Query: 1   MVASLAQFCQPNQEFVDNTTPHLQGDDLFSIFESLESVAEFSMIEDDIEPTKDGEETTSL 60
           MVASLAQFCQPNQEFVDNTTPHLQGDDLFSIFESLESVAEFSMIEDDIEPTKDGEETTSL
Sbjct: 1   MVASLAQFCQPNQEFVDNTTPHLQGDDLFSIFESLESVAEFSMIEDDIEPTKDGEETTSL 60

Query: 61  VFSETELEASPKTKRLKTTTTTTMAKASPLEEANPDGTQRISHITVERNRRKQMNEHLSI 120
           VFSETELEASPKTKRLKTTTTTTMAKASPLEEANPDGTQRISHITVERNRRKQMNEHLSI
Sbjct: 61  VFSETELEASPKTKRLKTTTTTTMAKASPLEEANPDGTQRISHITVERNRRKQMNEHLSI 120

Query: 121 LRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPRVVSSPRPN 180
           LRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPRVVSSPRPN
Sbjct: 121 LRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPRVVSSPRPN 180

Query: 181 LQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPTTVAAATASSGCTTNMANNNN 240
           LQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPTTVAAATASSGCTTNMANNNN
Sbjct: 181 LQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPTTVAAATASSGCTTNMANNNN 240

Query: 241 SLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKTVSPPIPGQA 300
           SLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKTVSPPIPGQA
Sbjct: 241 SLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKTVSPPIPGQA 300

Query: 301 VKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIECQLSAEELAHQIQQTFC 355
           VKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIECQLSAEELAHQIQQTFC
Sbjct: 301 VKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIECQLSAEELAHQIQQTFC 354

[Close]

BLAST of CmoCh18G013280.1 vs. ExPASy TrEMBL
Match: A0A6J1HT11 (transcription factor SPEECHLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111467517 PE=4 SV=1)

HSP 1 Score: 632.5 bits (1630), Expect = 1.1e-177
Identity = 344/357 (96.36%), Postives = 346/357 (96.92%), Query Frame = 0


Query: 1   MVASLAQFCQPNQEFVDNTTPHLQGDDLFSIFESLESVAEFSMIEDDIEPTKDGEETTSL 60
           MVASLAQFCQPNQEFVDNTTPHLQGDDLFSIFESLESVAEF+MIEDDIEPTKDGEETTSL
Sbjct: 1   MVASLAQFCQPNQEFVDNTTPHLQGDDLFSIFESLESVAEFTMIEDDIEPTKDGEETTSL 60

Query: 61  VFSETELEASPKTKRLKTTTTTTMAKASPLEEANPDGTQRISHITVERNRRKQMNEHLSI 120
           VFSETELEASPKTKRLK TTTT  AKASPLEEANPDGTQRISHITVERNRRKQMNEHLSI
Sbjct: 61  VFSETELEASPKTKRLKMTTTT--AKASPLEEANPDGTQRISHITVERNRRKQMNEHLSI 120

Query: 121 LRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPRVVSSPRPN 180
           LRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSP VVSSPRPN
Sbjct: 121 LRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPMVVSSPRPN 180

Query: 181 LQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPTTVAAATASSGCTTNMA---N 240
           LQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPT    ATASSGCTTNMA   N
Sbjct: 181 LQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPT----ATASSGCTTNMANNNN 240

Query: 241 NNNSLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKTVSPPIP 300
           NNNSLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKTVSPPIP
Sbjct: 241 NNNSLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKTVSPPIP 300

Query: 301 GQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIECQLSAEELAHQIQQTFC 355
           GQAVKIISALEHLSLEILHVKITT+DQTMINSFTIKIGIECQLSAEELAHQIQQTFC
Sbjct: 301 GQAVKIISALEHLSLEILHVKITTIDQTMINSFTIKIGIECQLSAEELAHQIQQTFC 351

[Close]

BLAST of CmoCh18G013280.1 vs. ExPASy TrEMBL
Match: A0A6J1CJ40 (transcription factor SPEECHLESS OS=Momordica charantia OX=3673 GN=LOC111011625 PE=4 SV=1)

HSP 1 Score: 531.9 bits (1369), Expect = 2.0e-147
Identity = 303/368 (82.34%), Postives = 323/368 (87.77%), Query Frame = 0


Query: 1   MVASLAQFCQPNQEFVDNTTPHLQGDDLFSIFESLESVAEFSMIEDDIEPTKDGEETTSL 60
           MV SLA F Q N+EFVDN  PHL+GDDLFSIFESLESVAEF++IEDDIE  KDGEETTSL
Sbjct: 1   MVDSLADFFQQNEEFVDN--PHLEGDDLFSIFESLESVAEFTVIEDDIEAFKDGEETTSL 60

Query: 61  VFSETELEASPKTKRLKTTTTTTMAKASPLEEANPDGTQRISHITVERNRRKQMNEHLSI 120
           VFSETELE SPK+KRLK TTT +   A+P EE NPDG QR+SHITVERNRRKQMNEHLS+
Sbjct: 61  VFSETELETSPKSKRLKMTTTMSSPMAAPSEEPNPDGPQRMSHITVERNRRKQMNEHLSV 120

Query: 121 LRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPRVVSSPRPN 180
           LR+LMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAK+QRKVYSE LSPRVVSSPR N
Sbjct: 121 LRSLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKKQRKVYSEVLSPRVVSSPRAN 180

Query: 181 LQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPTT-VAAATASSG--------- 240
           L MSPRKPPLSPRLNLPISPRTPQPTSPY+KPPRLQQPP+T  AAA A++G         
Sbjct: 181 LAMSPRKPPLSPRLNLPISPRTPQPTSPYSKPPRLQQPPSTGTAAAAAAAGGGGYNMVSS 240

Query: 241 ---CTTNMANNNNSLE-PSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPN 300
              CTTN+ NNNNSLE PSPCNSSSTT +S  + N   NDLVANSKSAIAEVEVKFTGPN
Sbjct: 241 AGSCTTNV-NNNNSLELPSPCNSSSTTTNSSIDMN--ANDLVANSKSAIAEVEVKFTGPN 300

Query: 301 VVLKTVSPPIPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIECQLSAEELA 355
           VVLKTVSPPIPGQAVKIISALE LSLEILHVKITTLD+TM+NSFTIKIGIECQLSAEELA
Sbjct: 301 VVLKTVSPPIPGQAVKIISALEQLSLEILHVKITTLDETMLNSFTIKIGIECQLSAEELA 360

[Close]

BLAST of CmoCh18G013280.1 vs. ExPASy TrEMBL
Match: A0A5A7U5B2 (Transcription factor SPEECHLESS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00130 PE=4 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 3.8e-143
Identity = 297/377 (78.78%), Postives = 314/377 (83.29%), Query Frame = 0


Query: 1   MVASLAQFCQPNQEFVDNT-TPHLQGDDLFSIFESLESVAEFSMIEDDIEPTKDGEETTS 60
           MV + A   Q N EFVD+T  PH +GDDLFSIFESLE+VAEF+MIEDD EP KDGEETTS
Sbjct: 1   MVDTFADLFQQNDEFVDHTLNPHFEGDDLFSIFESLENVAEFTMIEDDTEPVKDGEETTS 60

Query: 61  LVFSETELEASPKTKRLKTTTTTTMAKA------SPLEEANPDGTQRISHITVERNRRKQ 120
           LVFSETELE SPKTKRLKT   T+   A      S  E+ NPDG QR+SHITVERNRRKQ
Sbjct: 61  LVFSETELETSPKTKRLKTIAATSPTAAMTSTGLSSSEDPNPDGPQRMSHITVERNRRKQ 120

Query: 121 MNEHLSILRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRK-VYSEGLSPR 180
           MNEHL++LR+LMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAK+QRK VYSE LSPR
Sbjct: 121 MNEHLTVLRSLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKKQRKVVYSEVLSPR 180

Query: 181 VVSSPRPNLQMSPRKPPLSPRLNLPISPRTPQPTSPYTK-PPRLQQPPTTVAAA------ 240
           VVSSPRPNL MSPRKPPLSPRLNLPISPRTPQPTSPY+K PPRLQQ P+           
Sbjct: 181 VVSSPRPNLAMSPRKPPLSPRLNLPISPRTPQPTSPYSKPPPRLQQTPSAATGGGAYNNI 240

Query: 241 TASSGCTTNMANNNNSLEPSPCNSSSTTYSSIDNAN--------NANNDLVANSKSAIAE 300
           ++SS  TTNMANNNNSLEPSPCNS STT SSIDN N        N NNDLVANSKSAIAE
Sbjct: 241 SSSSSSTTNMANNNNSLEPSPCNSCSTTNSSIDNNNNNNSNSNSNNNNDLVANSKSAIAE 300

Query: 301 VEVKFTGPNVVLKTVSPPIPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIE 355
           VEVKFTGPNVVLKTVSPPIPGQA KIISALE LSLEILHVKITTLD+TM NSFTIKIGIE
Sbjct: 301 VEVKFTGPNVVLKTVSPPIPGQAFKIISALEQLSLEILHVKITTLDETMFNSFTIKIGIE 360

[Close]

BLAST of CmoCh18G013280.1 vs. ExPASy TrEMBL
Match: A0A1S3CNN8 (transcription factor SPEECHLESS OS=Cucumis melo OX=3656 GN=LOC103503016 PE=4 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 3.8e-143
Identity = 297/377 (78.78%), Postives = 314/377 (83.29%), Query Frame = 0


Query: 1   MVASLAQFCQPNQEFVDNT-TPHLQGDDLFSIFESLESVAEFSMIEDDIEPTKDGEETTS 60
           MV + A   Q N EFVD+T  PH +GDDLFSIFESLE+VAEF+MIEDD EP KDGEETTS
Sbjct: 1   MVDTFADLFQQNDEFVDHTLNPHFEGDDLFSIFESLENVAEFTMIEDDTEPVKDGEETTS 60

Query: 61  LVFSETELEASPKTKRLKTTTTTTMAKA------SPLEEANPDGTQRISHITVERNRRKQ 120
           LVFSETELE SPKTKRLKT   T+   A      S  E+ NPDG QR+SHITVERNRRKQ
Sbjct: 61  LVFSETELETSPKTKRLKTIAATSPTAAMTSTGLSSSEDPNPDGPQRMSHITVERNRRKQ 120

Query: 121 MNEHLSILRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRK-VYSEGLSPR 180
           MNEHL++LR+LMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAK+QRK VYSE LSPR
Sbjct: 121 MNEHLTVLRSLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKKQRKVVYSEVLSPR 180

Query: 181 VVSSPRPNLQMSPRKPPLSPRLNLPISPRTPQPTSPYTK-PPRLQQPPTTVAAA------ 240
           VVSSPRPNL MSPRKPPLSPRLNLPISPRTPQPTSPY+K PPRLQQ P+           
Sbjct: 181 VVSSPRPNLAMSPRKPPLSPRLNLPISPRTPQPTSPYSKPPPRLQQTPSAATGGGAYNNI 240

Query: 241 TASSGCTTNMANNNNSLEPSPCNSSSTTYSSIDNAN--------NANNDLVANSKSAIAE 300
           ++SS  TTNMANNNNSLEPSPCNS STT SSIDN N        N NNDLVANSKSAIAE
Sbjct: 241 SSSSSSTTNMANNNNSLEPSPCNSCSTTNSSIDNNNNNNSNSNSNNNNDLVANSKSAIAE 300

Query: 301 VEVKFTGPNVVLKTVSPPIPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIE 355
           VEVKFTGPNVVLKTVSPPIPGQA KIISALE LSLEILHVKITTLD+TM NSFTIKIGIE
Sbjct: 301 VEVKFTGPNVVLKTVSPPIPGQAFKIISALEQLSLEILHVKITTLDETMFNSFTIKIGIE 360

[Close]

BLAST of CmoCh18G013280.1 vs. TAIR 10
Match: AT5G53210.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 314.3 bits (804), Expect = 1.2e-85
Identity = 205/363 (56.47%), Postives = 251/363 (69.15%), Query Frame = 0


Query: 14  EFVDNTTPHLQGDDLFSIFESLESVAEFSMIEDDIEPTKDGEETTSLVFSETELE-ASPK 73
           EFVD +   L GDDLF+I ESLE   E S         KDG  ++  +  + + E +SPK
Sbjct: 13  EFVDTS---LAGDDLFAILESLEGAGEIS--PTAASTPKDGTTSSKELVKDQDYENSSPK 72

Query: 74  TKRLKTTTTTTM------AKASPLEEANPDGTQRISHITVERNRRKQMNEHLSILRTLMP 133
            K+ +  T                E+   DG Q++SH+TVERNRRKQMNEHL++LR+LMP
Sbjct: 73  RKKQRLETRKEEDEEEEDGDGEAEEDNKQDGQQKMSHVTVERNRRKQMNEHLTVLRSLMP 132

Query: 134 CFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPRVVSSPRPNLQ-MSP 193
           CFYVK+GDQASIIGGVVEYI ELQQVLQSLEAK+QRK Y+E LSPRVV SPRP+   +SP
Sbjct: 133 CFYVKRGDQASIIGGVVEYISELQQVLQSLEAKKQRKTYAEVLSPRVVPSPRPSPPVLSP 192

Query: 194 RKPPLSPRLN----------LPISPRTPQPTSPYTK-PPRL---QQPPTTVAAATASSGC 253
           RKPPLSPR+N           PISPRTPQPTSPY   PP+L    QPP    ++ AS   
Sbjct: 193 RKPPLSPRINHHQIHHHLLLPPISPRTPQPTSPYRAIPPQLPLIPQPPLRSYSSLAS--- 252

Query: 254 TTNMANNNNSLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKT 313
               ++  +    SP +SSS+   S ++ ++  N+LVANSKSA+A+VEVKF+G NV+LKT
Sbjct: 253 ---CSSLGDPPPYSPASSSSSPSVSSNHESSVINELVANSKSALADVEVKFSGANVLLKT 312

Query: 314 VSPPIPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIECQLSAEELAHQIQQ 355
           VS  IPGQ +KII+ALE L+LEIL V I T+D+TM+NSFTIKIGIECQLSAEELA QIQQ
Sbjct: 313 VSHKIPGQVMKIIAALEDLALEILQVNINTVDETMLNSFTIKIGIECQLSAEELAQQIQQ 364

[Close]

BLAST of CmoCh18G013280.1 vs. TAIR 10
Match: AT3G06120.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 149.8 bits (377), Expect = 4.0e-36
Identity = 98/257 (38.13%), Postives = 143/257 (55.64%), Query Frame = 0


Query: 101 ISHITVERNRRKQMNEHLSILRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKR 160
           +SHI VERNRR+QMNEHL  LR+L PCFY+K+GDQASIIGGV+E+IKELQQ++Q LE+K+
Sbjct: 1   MSHIAVERNRRRQMNEHLKSLRSLTPCFYIKRGDQASIIGGVIEFIKELQQLVQVLESKK 60

Query: 161 QRKVYSEGLSPRVVSSPRPNLQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPT 220
           +RK  +                                     +P+ PY           
Sbjct: 61  RRKTLN-------------------------------------RPSFPY----------- 120

Query: 221 TVAAATASSGCTTNMANNNNSLEPSPCNSSST--TYSSIDNANNAN--NDLVANSKSAIA 280
                            ++ ++EPS   +++T   +S I+N    +   ++ A   S  A
Sbjct: 121 -----------------DHQTIEPSSLGAATTRVPFSRIENVMTTSTFKEVGACCNSPHA 180

Query: 281 EVEVKFTGPNVVLKTVSPPIPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGI 340
            VE K +G NVVL+ VS  I GQ VKIIS LE LS ++LH+ I+++++T++  F +KIG+
Sbjct: 181 NVEAKISGSNVVLRVVSRRIVGQLVKIISVLEKLSFQVLHLNISSMEETVLYFFVVKIGL 192

Query: 341 ECQLSAEELAHQIQQTF 354
           EC LS EEL  ++Q++F
Sbjct: 241 ECHLSLEELTLEVQKSF 192

[Close]

BLAST of CmoCh18G013280.1 vs. TAIR 10
Match: AT3G24140.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 137.1 bits (344), Expect = 2.7e-32
Identity = 104/300 (34.67%), Postives = 150/300 (50.00%), Query Frame = 0


Query: 54  GEETTSLVFSETELEASPKTKRLKTTTTTTMAKASPLEEANPDGTQRISHITVERNRRKQ 113
           GEE      + T+ E   K KR +T+ T+        EE     +QR++HI VERNRRKQ
Sbjct: 161 GEEEDRENKNVTKKEVKSKRKRARTSKTS--------EEVE---SQRMTHIAVERNRRKQ 220

Query: 114 MNEHLSILRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPRV 173
           MNEHL +LR+LMP  YV++GDQASIIGG +E+++EL+Q+LQ LE++++R++  E      
Sbjct: 221 MNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGE------ 280

Query: 174 VSSPRPNLQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPTTVAAATASSGCTT 233
                                   ++  T   +SP T      QP       T   G   
Sbjct: 281 --------------------TGRDMTTTTTSSSSPITTVANQAQPLIITGNVTELEG--- 340

Query: 234 NMANNNNSLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKTVS 293
                                           +  A +KS +A+VEVK  G + ++K +S
Sbjct: 341 ---------------------------GGGLREETAENKSCLADVEVKLLGFDAMIKILS 393

Query: 294 PPIPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIECQLSAEELAHQIQQTF 353
              PGQ +K I+ALE L L ILH  ITT++QT++ SF +KI  E + +AE++A  IQQ F
Sbjct: 401 RRRPGQLIKTIAALEDLHLSILHTNITTMEQTVLYSFNVKITSETRFTAEDIASSIQQIF 393

[Close]

BLAST of CmoCh18G013280.1 vs. TAIR 10
Match: AT1G72210.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-18
Identity = 72/254 (28.35%), Postives = 117/254 (46.06%), Query Frame = 0


Query: 99  QRISHITVERNRRKQMNEHLSILRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEA 158
           QR++HI VERNRRKQMNE+L++LR+LMP +Y ++GDQASI+GG + Y+KEL+  LQS+E 
Sbjct: 123 QRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQASIVGGAINYLKELEHHLQSME- 182

Query: 159 KRQRKVYSEGLSPRVVSSPRPNLQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQP 218
                               P ++ +              S  +  P S +   P+    
Sbjct: 183 --------------------PPVKTATEDTGAGHDQTKTTSASSSGPFSDFFAFPQYSNR 242

Query: 219 PTTVAAATASSGCTTNMANNNNSLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEV 278
           PT+ AAA                                                 +AE+
Sbjct: 243 PTSAAAA-----------------------------------------------EGMAEI 302

Query: 279 EVKFTGPNVVLKTVSPPIPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIEC 338
           EV     +  LK ++   P Q +K++S+++ L L +LH+ +TT D +++ S ++K+    
Sbjct: 303 EVTMVESHASLKILAKKRPRQLLKLVSSIQSLRLTLLHLNVTTRDDSVLYSISVKVEEGS 308

Query: 339 QL-SAEELAHQIQQ 352
           QL + E++A  + Q
Sbjct: 363 QLNTVEDIAAAVNQ 308

[Close]

BLAST of CmoCh18G013280.1 vs. TAIR 10
Match: AT1G22490.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 90.1 bits (222), Expect = 3.8e-18
Identity = 83/298 (27.85%), Postives = 131/298 (43.96%), Query Frame = 0


Query: 56  ETTSLVFSETELEASPKTKRLKTTTTTTMAKASPLEEANPDGTQRISHITVERNRRKQMN 115
           E   L   + E    P+ +R +  T     K    EE      QR++HI VERNRRKQMN
Sbjct: 77  EELGLTAIDVESHPPPQHRRKRRRTRNCKNK----EEIE---NQRMTHIAVERNRRKQMN 136

Query: 116 EHLSILRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPRVVS 175
           E+L++LR+LMP  Y ++GDQASI+GG + Y+KEL+ +LQS+E KR               
Sbjct: 137 EYLAVLRSLMPSSYAQRGDQASIVGGAINYVKELEHILQSMEPKR--------------- 196

Query: 176 SPRPNLQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPTTVAAATASSGCTTNM 235
                                    RT  P    T    L  P                 
Sbjct: 197 ------------------------TRTHDPKGDKTSTSSLVGP----------------- 256

Query: 236 ANNNNSLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKTVSPP 295
                           T + S    +  ++  V  S S+ AE+EV     +  +K ++  
Sbjct: 257 ---------------FTDFFSFPQYSTKSSSDVPESSSSPAEIEVTVAESHANIKIMTKK 296

Query: 296 IPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIECQL-SAEELAHQIQQT 353
            P Q +K+I++L+ L L +LH+ +TTL  +++ S ++++    QL + +++A  + QT
Sbjct: 317 KPRQLLKLITSLQSLRLTLLHLNVTTLHNSILYSISVRVEEGSQLNTVDDIATALNQT 296

The following BLAST results are available for this feature:

BLAST of CmoCh18G013280.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q700C7	1.7e-84	56.47	Transcription factor SPEECHLESS OS=Arabidopsis thaliana OX=3702 GN=SPCH PE=1 SV=...	[more]
Q9M8K6	5.7e-35	38.13	Transcription factor MUTE OS=Arabidopsis thaliana OX=3702 GN=MUTE PE=2 SV=1	[more]
Q56YJ8	3.8e-31	34.67	Transcription factor FAMA OS=Arabidopsis thaliana OX=3702 GN=FAMA PE=1 SV=1	[more]
Q9C7T4	1.4e-17	28.35	Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1	[more]
Q9SK91	5.4e-17	27.85	Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2	[more]

BLAST of CmoCh18G013280.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G099	1.9e-187	100.00	transcription factor SPEECHLESS-like OS=Cucurbita moschata OX=3662 GN=LOC1114495...	[more]
A0A6J1HT11	1.1e-177	96.36	transcription factor SPEECHLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111467517...	[more]
A0A6J1CJ40	2.0e-147	82.34	transcription factor SPEECHLESS OS=Momordica charantia OX=3673 GN=LOC111011625 P...	[more]
A0A5A7U5B2	3.8e-143	78.78	Transcription factor SPEECHLESS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CNN8	3.8e-143	78.78	transcription factor SPEECHLESS OS=Cucumis melo OX=3656 GN=LOC103503016 PE=4 SV=...	[more]

BLAST of CmoCh18G013280.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53210.1	1.2e-85	56.47	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G06120.1	4.0e-36	38.13	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G24140.1	2.7e-32	34.67	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G72210.1	1.0e-18	28.35	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G22490.1	3.8e-18	27.85	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 142..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..253
None	No IPR available	PANTHER	PTHR46684:SF4	TRANSCRIPTION FACTOR SPEECHLESS	coord: 2..354
None	No IPR available	CDD	cd11448	bHLH_AtFAMA_like	coord: 101..174 e-value: 5.25602E-42 score: 139.404
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 104..155 e-value: 6.7E-12 score: 55.5
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 99..150 e-value: 4.3E-12 score: 45.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 98..149 score: 15.198898
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 91..163 e-value: 2.0E-14 score: 55.2
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 97..173
IPR044283	Transcription factor FAMA/SPEECHLESS/MUTE	PANTHER	PTHR46684	TRANSCRIPTION FACTOR FAMA	coord: 2..354

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh18G013280	CmoCh18G013280	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G013280.1:exon:3516	CmoCh18G013280.1:exon:3516	exon
CmoCh18G013280.1:exon:3517	CmoCh18G013280.1:exon:3517	exon
CmoCh18G013280.1:exon:3518	CmoCh18G013280.1:exon:3518	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G013280.1:cds	CmoCh18G013280.1:cds	CDS
CmoCh18G013280.1:cds	CmoCh18G013280.1:cds_2	CDS
CmoCh18G013280.1:cds	CmoCh18G013280.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh18G013280.1	CmoCh18G013280.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity