CmoCh17G009680.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G009680.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein kinase superfamily protein
Location	Cmo_Chr17: 8483250 .. 8485121 (-)
Sequence length	270
RNA-Seq Expression	CmoCh17G009680.1
Synteny	CmoCh17G009680.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCATGGCTTCGTTCCTCCCGTGCTCTTGGAACCTTTGGCTATCATACTCCCGAGTAAGTTGATTAAAAAATTTCTTATACTCCAGGCTGATTTTCACTATTCTGCATTTAGTTCATGCTTGACGCTAATATATTGACATTAAAGAAACTTACTGCTTAGATGTTTTCCCAATTTTAGATTATTTTAGCCCTTTCAAGCACTAGCTTGATCAGCTCCTTAAATGACTTGGCTGTGATCATTTTCCAGTCGAATACGCACAAAATGTACAGCTAACAACTAAGAGAAAAAGGGAAATAGAAAACAAGCACCCAGTGGTTCGTCCAGTTTATTGATCATGGTGCACGCGGCCACTGTTAAAATCACCATTGGTTCATTGATGCACCAAAGAAGAATACTTACAGACCTTAATGGGAAAATTTCCTATACTACCAGTACACTACTACTAGTTAATTTCCACGACACCAACTTATAATAATTATGTGGGATTCAATAGCATCAAATCATTTTTTATAAAATAAAAATCTTAATGTAAACCCATGAACTAGGTACAACAAACTTACTTCAAAAAAAAAGAAAAGAAAAAAAAAAAAACCGTACCTTGATAAGGATGGTGAAATAACCAGGAACAAAAGGTTCTCTCAACTAGCTCTAGCTGCTAGTTGCAGTATTTTCTTTTAATTAATACTTCTGAAATCACTTTTATAGCTTCAACACAATTAACAGACTTCATAGCAAGTATAGATGATCTTTAAGAAAAATAAGACTATTGAAGATTTTGAACGCTTGTATATTATTATTGATATAATCGGAAGTTGCAGGTTCCTCAATTCCTTCTCTATAATTCTTGAAAGTTTCAATGTAAAGCATCACTGCGTAATTATAATATACCATTACCAATAAGCTAAATGTTGTGGCTGGTGCCCATTTTTGAAAATTACAGAGATGCAATGACTGGACCATTGAATGTCAAGAGTGATGTGTACAGCTTTGGTGTTGTCCTGCTTCAACTTTTGACAGGAAGAAAGCCAGTTGATCCTACACTGCCTCGAGGACAGCCAAATCTCGTGACATTGGTACGTTTTTATGCCTATACTCTTCTCTTCCTCCTTTTATCCACCTTCTGAGCTTGAGACTTGGGAGTTTTGAAACGTTTTCAGGCCACTCCCAAGCGATGATAAAGTTAAGCAGTGTGTTGATGCACAAAACTAGGAGACGAGTACCCTCCCAAGTCAGTTGCAAAGGTACCCATACTGTTCTTTTCTTGTTTATGTTTGGTGATATTATCTCCTTTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGATTACCTGTCTGTGCGTGAGATTCCTTTACTTTTAGAAAGAAACTGTATTAAACCAACATTTCTCCATCTAAGGGGAAAGGGAACAGAGCCGGGAGAGGACATTTTTAATGACCTCGCGTCACAAAGTTTAACCCTTCACCAACATGGTTGAAATTTGAAAAGAGAAATAGGAAAAACTGAAAGCTACACCAACCGATATGAAATACAACAGGACCCCACATCACCCAGGTTGTATTAGAGAACGTTCAGATTTTTGAATCCACATCCGACTATAATTAGAGATAAATACATTGTGCTGATTTTATTGAATGGTTTTTCCTAAAAATGAAGGCTGTTTGCAGTTTACAAGCAAACACTGACAATTGTGATGTTATTATAAATTCACGATAAACCCCTTAATTAGCCAAGGTGCAACATCTAGATGTTTTGGCTGAATGTAATATGTAACGAAATCTTGCCAATATTTGTGATTCCATTGCAGTTTGCAGCCGTTGCTGCATTGTGCGTTCAACATGGAAGCAGAGTTCAGGTCAAACATGA

mRNA sequence

ATGGCTGCATGGCTTCGTTCCTCCCGTGCTCTTGGAACCTTTGGCTATCATACTCCCGAAGATGCAATGACTGGACCATTGAATGTCAAGAGTGATGTGTACAGCTTTGCCAAATCTCGTGACATTGGCCACTCCCAAGCGATGATAAAGTTAAGCAGTGTGTTGATGCACAAAACTAGGAGACGAGTACCCTCCCAAGTCAGTTGCAAAGTTTGCAGCCGTTGCTGCATTGTGCGTTCAACATGGAAGCAGAGTTCAGGTCAAACATGA

Coding sequence (CDS)

ATGGCTGCATGGCTTCGTTCCTCCCGTGCTCTTGGAACCTTTGGCTATCATACTCCCGAAGATGCAATGACTGGACCATTGAATGTCAAGAGTGATGTGTACAGCTTTGCCAAATCTCGTGACATTGGCCACTCCCAAGCGATGATAAAGTTAAGCAGTGTGTTGATGCACAAAACTAGGAGACGAGTACCCTCCCAAGTCAGTTGCAAAGTTTGCAGCCGTTGCTGCATTGTGCGTTCAACATGGAAGCAGAGTTCAGGTCAAACATGA

Protein sequence

MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSFAKSRDIGHSQAMIKLSSVLMHKTRRRVPSQVSCKVCSRCCIVRSTWKQSSGQT

Homology

[Close]

BLAST of CmoCh17G009680.1 vs. ExPASy Swiss-Prot
Match: O80719 (Probable receptor-like protein kinase At2g47060 OS=Arabidopsis thaliana OX=3702 GN=At2g47060 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG LN KSDVYSF
Sbjct: 231 MAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSF 266

[Close]

BLAST of CmoCh17G009680.1 vs. ExPASy Swiss-Prot
Match: Q9LUT0 (Receptor-like cytoplasmic kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CARK1 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.7e-08
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG L+ KSDVYSF
Sbjct: 227 MAARLHSTRVLGTFGYHAPEYAMTGTLSTKSDVYSF 262

[Close]

BLAST of CmoCh17G009680.1 vs. ExPASy Swiss-Prot
Match: Q41328 (Pto-interacting protein 1 OS=Solanum lycopersicum OX=4081 GN=PTI1 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-07
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG L+ KSDVYSF
Sbjct: 226 MAARLHSTRVLGTFGYHAPEYAMTGQLSSKSDVYSF 261

[Close]

BLAST of CmoCh17G009680.1 vs. ExPASy Swiss-Prot
Match: B9DFG5 (PTI1-like tyrosine-protein kinase 3 OS=Arabidopsis thaliana OX=3702 GN=PTI13 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-07
Identity = 27/36 (75.00%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG L  KSDVYSF
Sbjct: 273 MAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSF 308

[Close]

BLAST of CmoCh17G009680.1 vs. ExPASy Swiss-Prot
Match: Q8H1G6 (PTI1-like tyrosine-protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=PTI11 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.2e-07
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 2   AAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           AA L S+R LGTFGYH PE AMTG L  KSDVYSF
Sbjct: 229 AARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSF 263

[Close]

BLAST of CmoCh17G009680.1 vs. ExPASy TrEMBL
Match: A0A7J8XNN4 (Protein kinase domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_006627 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG LNVKSDVYSF
Sbjct: 245 MAAHLHSTRVLGTFGYHAPEYAMTGQLNVKSDVYSF 280

[Close]

BLAST of CmoCh17G009680.1 vs. ExPASy TrEMBL
Match: A0A1U8JW28 (pto-interacting protein 1-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107911092 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG LNVKSDVYSF
Sbjct: 231 MAARLHSTRVLGTFGYHAPEYAMTGQLNVKSDVYSF 266

[Close]

BLAST of CmoCh17G009680.1 vs. ExPASy TrEMBL
Match: A0A0B0PVE2 (pto-interacting protein 1-like OS=Gossypium arboreum OX=29729 GN=LOC108478212 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG LNVKSDVYSF
Sbjct: 227 MAARLHSTRVLGTFGYHAPEYAMTGQLNVKSDVYSF 262

[Close]

BLAST of CmoCh17G009680.1 vs. ExPASy TrEMBL
Match: A0A2P5WFH6 (Protein kinase domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G128800v1 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG LNVKSDVYSF
Sbjct: 227 MAARLHSTRVLGTFGYHAPEYAMTGQLNVKSDVYSF 262

[Close]

BLAST of CmoCh17G009680.1 vs. ExPASy TrEMBL
Match: A0A5D2SFK2 (Protein kinase domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D12G140600v1 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG LNVKSDVYSF
Sbjct: 227 MAARLHSTRVLGTFGYHAPEYAMTGQLNVKSDVYSF 262

[Close]

BLAST of CmoCh17G009680.1 vs. NCBI nr
Match: KAG6575723.1 (Delta(24)-sterol reductase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-14
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 44  HSQAMIKLSSVLMHKTRRRVPSQVSCKVCSRCCIVRSTWKQSS 87
           HSQAMIKLSSVLMHKTRRRVPSQVSCKVCSRCCIVRSTWKQSS
Sbjct: 157 HSQAMIKLSSVLMHKTRRRVPSQVSCKVCSRCCIVRSTWKQSS 199

[Close]

BLAST of CmoCh17G009680.1 vs. NCBI nr
Match: MBA0688863.1 (hypothetical protein [Gossypium aridum])

HSP 1 Score: 61.2 bits (147), Expect = 5.1e-06
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG LNVKSDVYSF
Sbjct: 245 MAAHLHSTRVLGTFGYHAPEYAMTGQLNVKSDVYSF 280

[Close]

BLAST of CmoCh17G009680.1 vs. NCBI nr
Match: MBA0743732.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 60.8 bits (146), Expect = 6.7e-06
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG LNVKSDVYSF
Sbjct: 219 MAARLHSTRVLGTFGYHAPEYAMTGQLNVKSDVYSF 254

[Close]

BLAST of CmoCh17G009680.1 vs. NCBI nr
Match: KAA3462392.1 (pto-interacting protein 1-like isoform X2 [Gossypium australe])

HSP 1 Score: 60.8 bits (146), Expect = 6.7e-06
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG LNVKSDVYSF
Sbjct: 227 MAARLHSTRVLGTFGYHAPEYAMTGQLNVKSDVYSF 262

[Close]

BLAST of CmoCh17G009680.1 vs. NCBI nr
Match: MBA0656189.1 (hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 60.8 bits (146), Expect = 6.7e-06
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG LNVKSDVYSF
Sbjct: 224 MAARLHSTRVLGTFGYHAPEYAMTGQLNVKSDVYSF 259

[Close]

BLAST of CmoCh17G009680.1 vs. TAIR 10
Match: AT2G47060.1 (Protein kinase superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-09
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG LN KSDVYSF
Sbjct: 231 MAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSF 266

[Close]

BLAST of CmoCh17G009680.1 vs. TAIR 10
Match: AT2G47060.2 (Protein kinase superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-09
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG LN KSDVYSF
Sbjct: 231 MAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSF 266

[Close]

BLAST of CmoCh17G009680.1 vs. TAIR 10
Match: AT2G47060.3 (Protein kinase superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-09
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG LN KSDVYSF
Sbjct: 132 MAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSF 167

[Close]

BLAST of CmoCh17G009680.1 vs. TAIR 10
Match: AT2G47060.4 (Protein kinase superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-09
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG LN KSDVYSF
Sbjct: 231 MAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSF 266

[Close]

BLAST of CmoCh17G009680.1 vs. TAIR 10
Match: AT2G47060.5 (Protein kinase superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-09
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1   MAAWLRSSRALGTFGYHTPEDAMTGPLNVKSDVYSF 37
           MAA L S+R LGTFGYH PE AMTG LN KSDVYSF
Sbjct: 231 MAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSF 266

The following BLAST results are available for this feature:

BLAST of CmoCh17G009680.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80719	2.5e-08	77.78	Probable receptor-like protein kinase At2g47060 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LUT0	9.7e-08	75.00	Receptor-like cytoplasmic kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CARK1 PE=1...	[more]
Q41328	1.6e-07	75.00	Pto-interacting protein 1 OS=Solanum lycopersicum OX=4081 GN=PTI1 PE=1 SV=2	[more]
B9DFG5	2.2e-07	75.00	PTI1-like tyrosine-protein kinase 3 OS=Arabidopsis thaliana OX=3702 GN=PTI13 PE=...	[more]
Q8H1G6	8.2e-07	74.29	PTI1-like tyrosine-protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=PTI11 PE=...	[more]

BLAST of CmoCh17G009680.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J8XNN4	2.5e-06	80.56	Protein kinase domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_0...	[more]
A0A1U8JW28	3.2e-06	80.56	pto-interacting protein 1-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC10...	[more]
A0A0B0PVE2	3.2e-06	80.56	pto-interacting protein 1-like OS=Gossypium arboreum OX=29729 GN=LOC108478212 PE...	[more]
A0A2P5WFH6	3.2e-06	80.56	Protein kinase domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES31...	[more]
A0A5D2SFK2	3.2e-06	80.56	Protein kinase domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A...	[more]

BLAST of CmoCh17G009680.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575723.1	1.8e-14	100.00	Delta(24)-sterol reductase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
MBA0688863.1	5.1e-06	80.56	hypothetical protein [Gossypium aridum]	[more]
MBA0743732.1	6.7e-06	80.56	hypothetical protein [Gossypium gossypioides]	[more]
KAA3462392.1	6.7e-06	80.56	pto-interacting protein 1-like isoform X2 [Gossypium australe]	[more]
MBA0656189.1	6.7e-06	80.56	hypothetical protein [Gossypium klotzschianum]	[more]

BLAST of CmoCh17G009680.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47060.1	1.8e-09	77.78	Protein kinase superfamily protein	[more]
AT2G47060.2	1.8e-09	77.78	Protein kinase superfamily protein	[more]
AT2G47060.3	1.8e-09	77.78	Protein kinase superfamily protein	[more]
AT2G47060.4	1.8e-09	77.78	Protein kinase superfamily protein	[more]
AT2G47060.5	1.8e-09	77.78	Protein kinase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011009	Protein kinase-like domain superfamily	SUPERFAMILY	56112	Protein kinase-like (PK-like)	coord: 6..37

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh17G009680	CmoCh17G009680	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G009680.1:exon:2147	CmoCh17G009680.1:exon:2147	exon
CmoCh17G009680.1:exon:2146	CmoCh17G009680.1:exon:2146	exon
CmoCh17G009680.1:exon:2145	CmoCh17G009680.1:exon:2145	exon
CmoCh17G009680.1:exon:2144	CmoCh17G009680.1:exon:2144	exon
CmoCh17G009680.1:exon:2143	CmoCh17G009680.1:exon:2143	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G009680.1:cds	CmoCh17G009680.1:cds_5	CDS
CmoCh17G009680.1:cds	CmoCh17G009680.1:cds_4	CDS
CmoCh17G009680.1:cds	CmoCh17G009680.1:cds_3	CDS
CmoCh17G009680.1:cds	CmoCh17G009680.1:cds_2	CDS
CmoCh17G009680.1:cds	CmoCh17G009680.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh17G009680.1	CmoCh17G009680.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity