CmoCh17G007630.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G007630.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr17: 7451086 .. 7454438 (+)
Sequence length345
RNA-Seq ExpressionCmoCh17G007630.1
SyntenyCmoCh17G007630.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCCAACAGTGTCATTGAAGTCGGCGTTTCTGGGCCATTGTTGAGCGCATCTTCTCTTCGGCGTGGCGACTTTGCCGGTGGTGTTTCGTTCATTGGTTTCCTCCTCGATGTTGTTCGAAATTGATTCTGAGTTAAGCTATCGGCGTGGAGTACGTCTTCTATTCGAGACATGACTGTGAAGGCCAAGCTTTCCAGAGTTCTGGAGTAGCTCTCTAGAACGGCGTGTCCTACATCCTGAAGTTCAGGCAAGAGTAAGTTGTGATTGATCTTGAAAGATTTTAGGCAAGAGTTACTAGGAATTTACAACATGTTTGTTCTGTATCCTATAATGTAGATGGACATGCTGTGTTGCTTACTCTGACAAAGAAATGGACATAGAATTGTTATTTCACATATCATGTCATTTAGGAGATGTTGGGAAGAGTTTTAGTAAGCATGGGTTTATGAAGCCTAGAGTTAAAAAGAAGCTTTGATTTTAGTTTCTATAAATGTGCATAACCGCCCAAGCCTACTACTCACAGATATTGGACTTTTCTTTAAAGAGTTTTCCCTCAAGGTTTATAGGTCTACTAGGGAGAGGTTTGCGCACCTTATGTTTCGTTCCCCTCTCTAACTGATGAGAGATCTCACAATCTACTCCCTCGGGGGCTAGCGTCCTCGCTGGCACACCGTCCAGTGTCTAGCTCTGATATCATTTGTAACAGCCCAAACCCACCACTAGCATATATTGTCCTCTTTGGGCTTTCCCTTAAAAGGCTTCCCCTCAAGGTTTTATAGCGTCTACTAGGGAGAGGTTTCCACACTCTTATGTTTCGTTCCTCTCTCCAACCGATGTGGGATCTCACAATTCACCCCCTTGGGAGCCAACATTCTCGCTGACACACTGTCTGGTGTCTGGCTCTGATATCATTTGTAACACCCCAAGTCCACGACTAGTAGATATTGTCCTCTTTGGACTTTCCCTTAAAGGGCTTCCCCTCAAGATCTTAAAACACGTCTAAAAAGGCTTCTACGAGGGTGAGGTTTCTACACCCTTATAAAAAATATTTCATCTTTGGATTTTCCCTTAAAGGGCTTCCCCTCAAGATCTTAAAACACGTCTAAAAAGGCTTCTACGAGGGTGAGGTTTCTACACCCTTATAAAAAATATTTCATTCCTCTCTCCAACCGACGTGGGATCTCATCAAATAGATTAGATTTCTTTTCGGGGAGTGGGGAATAGAACTAACTTATAGAAATTTCAGCTTGTTGAACTGGTGGGCTTATGGTTTATGAAGGATAGTATGGAGTATAGAATGTGGTTTATGAGTATGAATCCAAAATACAGGCTCCTGCAGAAAGGTTAGCAAACACATAACTTGAGATGAACAAGCACACACAAATGTTAATGATTTCAGATGAGATTATAGACAAGGAAGGTGCATTCTATTACCCGATTGAGTTGAATTTTGCTGACATCTAGTGAAGATTGTGGGACGCCAGGGAAGCGGTGCTTCAGTATAAGCAAGATGGTCTCAGCTCTCTCTTCAAAAATTTCTCTCTTCTCCAAGCTCACTGCCGGACCCCAGGTAGATTTTCCATCTTTCTGGTTCATCTTCCTCTTCCAAATCACTATGGAAGCTTCAATTCTATTTTTGAGGTCTAGGATCTTATTATCTGATGTTAAGTCCATGCTGGAAAGAAACTGATCAGGATCAAAGAACTCAACTGTTATACTTCTGTAGATGGAATCCCCTAGGCTTACCCTTCCATTCTGTAAAACCATAAACAAAACTTAAATTTTGAGTGAAGATTCGTTTTGAAACCGTTCCAAACATTACTCGGTTTTGCTTACTCTAGGGAGAGATTCAATGTAGTCTTCAGGCATCTCCATTTCTGATATGATTTGAGCATTTATACCCATGGCTGCTTTGAGAACTTGGTTGACACAATCCTTCTGGTACTGCAGAAACTTTCTCGACGCTTCAGATAAACCATTTGGAGGAACTATAACTGTTGGTAGCTTCTTTTTGTTATTTCCTTTCTCTGAATCATCAGCACCTCTTGCTTCATAGTAGAACTCATTTTGATCTTTAAAGTTATCCAGACACTCCTGTGTTTTGTTGTGGACAATCCAATATCATATAAGAAGCAGAAACAAAAGAAAAAACAGTAGATTTAACCCATAGTTCTTACAATTAACATAGCATCAAGCTTCCTCAAAGCTGGGATGTTCGAGCGCAAGTTATTTCGTTGGCGGGTCACCATTATCTATAGCAAAAGAAAAGAAGGAACAATCATATCAATGGATTCTAATGACATAGTTGAAATTTGATGGCTACCTCCATATTTGTTCCATCCTTGGATTTCTGCTGTGAAGGAACAAGCTCTACGATGTAATCCGTAACGGATAAGAGCAAATCGATTTCTTTTTGCCATCTTGTTTTTCTTTCAGGTGACATTGGCTCAAGACGCCATTGTTCACCAAAGACAGAAGCTGCAAATTTGGCTGACTAAGTTTAGATCCCAATAGAAATTTCTGTGCTGCTAGCTAAGCCCATGTAAGAGATTCTAGGCACTTACAGGCAAGGTTTGTGATAGCATTAGACAATGCCAAGGCTGAGGAAACACCCTTCCCTCCCCCAGTCATGTCTTCCCCTAACAGCAACATTGCAAACCTCTCTTTCATCTGTTCCATTTCTGAATTATAACCCAATTGGAAGAAACAATTTAGTTACACAAGGATATGCCGTGTAAGATACGGATATTTCGAAAGTGTAAAGACTAAAAGAAACACGAACCTATGTCGATCGGGTCTAATGCTTCCTTATCATTGGCAGCATTGTGGTCCTTGCTGCTCAACTTCGGTTTCGAACCCCTTTCGGGCCAATTTGATGGTGCCAATGGTGGCATGGCTTGGCATTTTACAGCCGAGCTGTTGCGAAGTAGTGTCCAACCCTGTCTTTTCGACATCGACAACTCTTCATCGATGCTGTAGTCCAACATTCTGGCAGTCTCTATACTCAAGCGCTAAGTGTGTCTGTCTGTATTCTCGTATGTTTGTCTTAAGTTGAAAAAAATCTAGCTCGAAAACCTTCGTGTTCCTGCTCCATAACCCGAACCGTCTTCAGTTTCTCGATGAAACTTTTGAGTGAAAACACAATGGACAACAACAAAAAACGAGAAATGGGTTATGAAAATGAAGAGAATAGAGAAAAAAAGTGGATTTCATTTGGTTTGTTCTTGTTTTTGTGTGTATATTTTTTGTGCAGGAGATTGATAGGAGGTGAGATGGATCTTAAGAGGAGTTGTTTTGGGTTTAGGTGGAAGAATTTGGTCTGTTATTTTCTTCAAAAGTGGTTGAATTGA

mRNA sequence

ATGAAATCCAACAGTGTCATTGAAGTCGGCGTTTCTGGGCCATTGTTGAGCGCATCTTCTCTTCGGCGTGGCGACTTTGCCGGTGATTGTGGGACGCCAGGGAAGCGGTGCTTCAGTATAAGCAAGATGGTCTCAGCTCTCTCTTCAAAAATTTCTCTCTTCTCCAAGCTCACTGCCGGACCCCAGGTGACATTGGCTCAAGACGCCATTGTTCACCAAAGACAGAAGCTGCAAATTTGGCTGACTAAGAGATTGATAGGAGGTGAGATGGATCTTAAGAGGAGTTGTTTTGGGTTTAGGTGGAAGAATTTGGTCTGTTATTTTCTTCAAAAGTGGTTGAATTGA

Coding sequence (CDS)

ATGAAATCCAACAGTGTCATTGAAGTCGGCGTTTCTGGGCCATTGTTGAGCGCATCTTCTCTTCGGCGTGGCGACTTTGCCGGTGATTGTGGGACGCCAGGGAAGCGGTGCTTCAGTATAAGCAAGATGGTCTCAGCTCTCTCTTCAAAAATTTCTCTCTTCTCCAAGCTCACTGCCGGACCCCAGGTGACATTGGCTCAAGACGCCATTGTTCACCAAAGACAGAAGCTGCAAATTTGGCTGACTAAGAGATTGATAGGAGGTGAGATGGATCTTAAGAGGAGTTGTTTTGGGTTTAGGTGGAAGAATTTGGTCTGTTATTTTCTTCAAAAGTGGTTGAATTGA

Protein sequence

MKSNSVIEVGVSGPLLSASSLRRGDFAGDCGTPGKRCFSISKMVSALSSKISLFSKLTAGPQVTLAQDAIVHQRQKLQIWLTKRLIGGEMDLKRSCFGFRWKNLVCYFLQKWLN
Homology
[Close]
BLAST of CmoCh17G007630.1 vs. NCBI nr
Match: KAG7014074.1 (hypothetical protein SDJN02_24246, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.2 bits (404), Expect = 1.0e-35
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MKSNSVIEVGVSGPLLSASSLRRGDFAGDCGTPGKRCFSISKMVSALSSKISLFSKLTAG 60
          MKSNSVIEVGVSGPLLSASSLRRGDFAGDCGTPGKRCFSISKMVSALSSKISLFSKLTAG
Sbjct: 1  MKSNSVIEVGVSGPLLSASSLRRGDFAGDCGTPGKRCFSISKMVSALSSKISLFSKLTAG 60

Query: 61 PQVTLAQDAIVHQRQKLQIWLT 83
          PQVTLAQDAIVHQRQKLQIWLT
Sbjct: 61 PQVTLAQDAIVHQRQKLQIWLT 82

The following BLAST results are available for this feature:
BLAST of CmoCh17G007630.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G007630.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G007630.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014074.11.0e-35100.00hypothetical protein SDJN02_24246, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh17G007630.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh17G007630CmoCh17G007630gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh17G007630.1:exon:4399CmoCh17G007630.1:exon:4399exon
CmoCh17G007630.1:exon:4398CmoCh17G007630.1:exon:4398exon
CmoCh17G007630.1:exon:4397CmoCh17G007630.1:exon:4397exon
CmoCh17G007630.1:exon:4396CmoCh17G007630.1:exon:4396exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh17G007630.1:cdsCmoCh17G007630.1:cdsCDS
CmoCh17G007630.1:cdsCmoCh17G007630.1:cds_2CDS
CmoCh17G007630.1:cdsCmoCh17G007630.1:cds_3CDS
CmoCh17G007630.1:cdsCmoCh17G007630.1:cds_4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh17G007630.1CmoCh17G007630.1-proteinpolypeptide