CmoCh17G002980.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G002980.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionCASP-like protein
LocationCmo_Chr17: 1788265 .. 1790234 (-)
Sequence length1043
RNA-Seq ExpressionCmoCh17G002980.1
SyntenyCmoCh17G002980.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACGCAGATCAAGTACCAATACTACCACTCCCTCACGTTTCCTTTCCTTCTTTCTGCACTATGTGGCGCCTTCAATGCCTTCCAACGCATCCAATTCCAAGCCCTAATTTCAACGCCTTCTGCAATTCCATCGCCTATGAATATGTTTCCTCCTCACATTCTCCAATTTCGACATCAATTTCTCTTCGATCTACGAATTTTTACTGCAGGAAGCGAATTAACTGCCAATGGACGGCCAGAGGAAGGCCGGATTCGGCGTATCGGACGGATCGGAGACGACGACGGCTAGGTTTTGTGATTTGATTTTGAGATTTGTGGCGATGATTTTGACTTTGGCTGCTGCTATCGTTATCGGCGTCGATAAGCAGGCGAAAACGGTGTCGCTTCAACTCACCGCCGCGTTGCCGCCGCTGCGCATTCCTGTTACTGCACGATGGCATTATTCATCTGCCTTCGTGTAAGCTTTACTTTCTAGTGGATTCTTCTTTTCTAAAACTCAAGATAATATATATATATATATTTGTCATTTTAATTATTTAATAATGTTTTTTTTTAATATTTCTCAATATTCATAAATTTAAAGCCTACCCCTTGCTATTTGAAAGATTCTCTGGTCATTTCCTAAAAGAAAAAATAGTTAAATTTTGTTTTTTCGTTTAATATTATTTTTTTGATATTTCATTTTCATTGAATGTCTATTTAATCCATGAAATTGGGATAGGTGTAGACATAAATAAATAAATAAATATATATATATATATATATATATATATATATATTCTGCTCACTTTTTATATATATATATCAAAATTATGGTACAAAATTACGTATATTTTTTCTTAGTAAATAAATAAAAAATAATGGCGGAATATTATGTTTTAATATTAAATTTGAGTTTTTTGAAATTATGTTAAAGATCCTATAAAATATTATTGAATTTCATACTATATTTTATTTTTTAATACAAATGATATTTAAAATTATAAATTATCATTAAATTTTTTAACGAATTTATATATATATATTATTGAATTTCATACTATATTTTTTTTTTAATACAAATGATATTAAAAATTATAAATTATCATTAAATTTTTTAAGGAATATATATATAATGAAAAAATCCCCTCCCGAGATGGGATCGAAATAGGAGAATTTAGGTTATTAAATATGGTGAATAAAAATTTTAAATTTTTGTAAAAAAAAATTAATAAAAAAAATAAAACTAATAATTGTATGAATTAAATTTAATTTTAAAATTTATTATTTTCTTAAATACGTGAGAATAATAATTTTATTTAGGTGATTTTGTATTAGGTATGAATTACTAACCAATAGTGATTTGTAGTAATAAATGGATTTTTTTTTCCTTTTTTATTTAGGTATTTTGTGGTGGTAAACGCAATAGCATGTTCATACGCAGCCTTCTCGCTGGTTCTTTCGGCCGTAAACAAAGGCAAAGGCAGAAGAAGCTTTATAAGATCGGCGATCACCGTGATGGACCTTCTGACGGTGGCGCTGCTGTTTTCCGGCTTCGGAGCCGCCGCGCCGTCGGTGTCATCGGCCTGAAAGGGAATTCACATCTTAATTGGAATAAAATTTGCGATGTCTTTGGAAGATTCTGTGGCCAAGGAGCTGCTTCCCTTCTCCTCTCACTGCTTGGAGCGACGTCGTTTCTCTCTCTTGCTGTGCTCTCTGCTTTGAGGCTTCCAAGGGGATCCAATTGAGAACAATAAATAAATAAATACAGCCTTTTCAATTTTAAATCTTCCTAGATAGTGTAAAATTTGGTGTTGTTTTTGTTAGGTTAAATGAGATATCTTATATCAAAAACGTGTTATCTTAGAGTATACATCGGGACTATGCTTGGGATTAGTGCTATGGATTGAACGTGTTATTATTGTCAACCCGAGCATAATTTACTTACAAATTAAGGTAAATACCTTCGATGAACAGGTCAAGAATTCAAA

mRNA sequence

AACGCAGATCAAGTACCAATACTACCACTCCCTCACGTTTCCTTTCCTTCTTTCTGCACTATGTGGCGCCTTCAATGCCTTCCAACGCATCCAATTCCAAGCCCTAATTTCAACGCCTTCTGCAATTCCATCGCCTATGAATATGTTTCCTCCTCACATTCTCCAATTTCGACATCAATTTCTCTTCGATCTACGAATTTTTACTGCAGGAAGCGAATTAACTGCCAATGGACGGCCAGAGGAAGGCCGGATTCGGCGTATCGGACGGATCGGAGACGACGACGGCTAGGTTTTGTGATTTGATTTTGAGATTTGTGGCGATGATTTTGACTTTGGCTGCTGCTATCGTTATCGGCGTCGATAAGCAGGCGAAAACGGTGTCGCTTCAACTCACCGCCGCGTTGCCGCCGCTGCGCATTCCTGTTACTGCACGATGGCATTATTCATCTGCCTTCGTATTTTGTGGTGGTAAACGCAATAGCATGTTCATACGCAGCCTTCTCGCTGGTTCTTTCGGCCGTAAACAAAGGCAAAGGCAGAAGAAGCTTTATAAGATCGGCGATCACCGTGATGGACCTTCTGACGGTGGCGCTGCTGTTTTCCGGCTTCGGAGCCGCCGCGCCGTCGGTGTCATCGGCCTGAAAGGGAATTCACATCTTAATTGGAATAAAATTTGCGATGTCTTTGGAAGATTCTGTGGCCAAGGAGCTGCTTCCCTTCTCCTCTCACTGCTTGGAGCGACGTCGTTTCTCTCTCTTGCTGTGCTCTCTGCTTTGAGGCTTCCAAGGGGATCCAATTGAGAACAATAAATAAATAAATACAGCCTTTTCAATTTTAAATCTTCCTAGATAGTGTAAAATTTGGTGTTGTTTTTGTTAGGTTAAATGAGATATCTTATATCAAAAACGTGTTATCTTAGAGTATACATCGGGACTATGCTTGGGATTAGTGCTATGGATTGAACGTGTTATTATTGTCAACCCGAGCATAATTTACTTACAAATTAAGGTAAATACCTTCGATGAACAGGTCAAGAATTCAAA

Coding sequence (CDS)

ATGGACGGCCAGAGGAAGGCCGGATTCGGCGTATCGGACGGATCGGAGACGACGACGGCTAGGTTTTGTGATTTGATTTTGAGATTTGTGGCGATGATTTTGACTTTGGCTGCTGCTATCGTTATCGGCGTCGATAAGCAGGCGAAAACGGTGTCGCTTCAACTCACCGCCGCGTTGCCGCCGCTGCGCATTCCTGTTACTGCACGATGGCATTATTCATCTGCCTTCGTATTTTGTGGTGGTAAACGCAATAGCATGTTCATACGCAGCCTTCTCGCTGGTTCTTTCGGCCGTAAACAAAGGCAAAGGCAGAAGAAGCTTTATAAGATCGGCGATCACCGTGATGGACCTTCTGACGGTGGCGCTGCTGTTTTCCGGCTTCGGAGCCGCCGCGCCGTCGGTGTCATCGGCCTGAAAGGGAATTCACATCTTAATTGGAATAAAATTTGCGATGTCTTTGGAAGATTCTGTGGCCAAGGAGCTGCTTCCCTTCTCCTCTCACTGCTTGGAGCGACGTCGTTTCTCTCTCTTGCTGTGCTCTCTGCTTTGAGGCTTCCAAGGGGATCCAATTGA

Protein sequence

MDGQRKAGFGVSDGSETTTARFCDLILRFVAMILTLAAAIVIGVDKQAKTVSLQLTAALPPLRIPVTARWHYSSAFVFCGGKRNSMFIRSLLAGSFGRKQRQRQKKLYKIGDHRDGPSDGGAAVFRLRSRRAVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGATSFLSLAVLSALRLPRGSN
Homology
BLAST of CmoCh17G002980.1 vs. ExPASy Swiss-Prot
Match: B9HMP6 (CASP-like protein 1E1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_820934 PE=3 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 4.7e-28
Identity = 81/199 (40.70%), Postives = 114/199 (57.29%), Query Frame = 0

Query: 1   MDGQRKAGFGVSDG-------SETTTARFCDLILRFVAMILTLAAAIVIGVDKQAKTVSL 60
           M+ Q KA   V DG       S++  A  CDL+LR +A++LTLAAAIV+GVDKQ K V +
Sbjct: 1   MESQNKASLPVMDGLERRVVASQSEGASTCDLLLRVLALVLTLAAAIVLGVDKQTKVVPI 60

Query: 61  QLTAALPPLRIPVTARWHYSSAFVFCGGKRN---SMFIRSLLAGSFGRKQRQRQKKLYKI 120
           ++   LP + +PV+A+WHY SAF +         S    SL+    G+K       +  +
Sbjct: 61  KIVDTLPAINLPVSAKWHYLSAFTYSVASNAIACSYAALSLVLAVSGKKGIMSIVIVLDL 120

Query: 121 GDHRDGPSDGGAAVFRLRSRRAVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLG 180
                  S  GAA+       A+G++G +GNSH+ W K+C VFGRFC Q A S+ LSLLG
Sbjct: 121 LMVAMLFSSNGAAL-------AIGLMGYQGNSHVRWTKVCHVFGRFCNQVAVSISLSLLG 180

Query: 181 ATSFLSLAVLSALRLPRGS 190
           +  FL L  +++LRL + S
Sbjct: 181 SILFLLLVGITSLRLHKKS 192

BLAST of CmoCh17G002980.1 vs. ExPASy Swiss-Prot
Match: C6TBD0 (CASP-like protein 1E1 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.0e-27
Identity = 74/171 (43.27%), Postives = 103/171 (60.23%), Query Frame = 0

Query: 23  CDLILRFVAMILTLAAAIVIGVDKQAKTVSLQLTAALPPLRIPVTARWHYSSAFVFCGGK 82
           CDL+LR +A  +TL AAIVI VDKQ K V +QL+ + PPL +P+TA+WH  SAFV+    
Sbjct: 23  CDLLLRLLAFTVTLVAAIVIAVDKQTKLVPIQLSDSFPPLNVPLTAKWHQMSAFVYFLVT 82

Query: 83  RNSMFIRSLLAGSFGRKQRQRQKKLYKIGDHRDG------PSDGGAAVFRLRSRRAVGVI 142
                  + ++       R + K L+ +    D        S  GAA        AVG++
Sbjct: 83  NAIACTYAAMSLLLALVNRGKSKGLWTLIAVLDTFMVALLFSGNGAAA-------AVGIL 142

Query: 143 GLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGATSFLSLAVLSALRLPR 188
           G KGNSH+NWNK+C+VFG+FC Q AAS+ +SL+G+ +FL L V+  +RL R
Sbjct: 143 GYKGNSHVNWNKVCNVFGKFCDQMAASIGVSLIGSLAFLLLVVIPVVRLHR 186

BLAST of CmoCh17G002980.1 vs. ExPASy Swiss-Prot
Match: C6SZP8 (CASP-like protein 1E2 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-26
Identity = 74/170 (43.53%), Postives = 103/170 (60.59%), Query Frame = 0

Query: 24  DLILRFVAMILTLAAAIVIGVDKQAKTVSLQLTAALPPLRIPVTARWHYSSAFVFCGGKR 83
           DL+LR +A  +TL AAIVI VDKQ K V +QL+ +LPPL +P+TA+WH  SA V+     
Sbjct: 23  DLLLRLLAFTVTLVAAIVIAVDKQTKVVPIQLSDSLPPLDVPLTAKWHQMSAIVYFLVTN 82

Query: 84  NSMFIRSLLAGSFGRKQRQRQKKLYKIGDHRDG------PSDGGAAVFRLRSRRAVGVIG 143
                 ++L+       R + K L+ +    D        S  GAA        AVGV+G
Sbjct: 83  AIACTYAVLSLLLALVNRGKSKGLWTLIAVLDAFMVALLFSGNGAAA-------AVGVLG 142

Query: 144 LKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGATSFLSLAVLSALRLPR 188
            KGNSH+NWNK+C+VFG+FC Q AAS+ +SL+G+ +FL L ++  +RL R
Sbjct: 143 YKGNSHVNWNKVCNVFGKFCDQMAASIGVSLIGSLAFLLLVIIPGVRLHR 185

BLAST of CmoCh17G002980.1 vs. ExPASy Swiss-Prot
Match: B9RT04 (CASP-like protein 1E1 OS=Ricinus communis OX=3988 GN=RCOM_0680180 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.9e-26
Identity = 81/196 (41.33%), Postives = 110/196 (56.12%), Query Frame = 0

Query: 1   MDGQRKAGFGVSDGSET--------TTARFCDLILRFVAMILTLAAAIVIGVDKQAKTVS 60
           MD Q K      DG E+         T  F  L+LR +A +LT  AAIV GV+ Q +TV 
Sbjct: 1   MDSQNKNSVDAMDGIESRGMKERGGRTNSF--LVLRVLAFVLTSTAAIVHGVNNQTETVP 60

Query: 61  LQLTAALPPLRIPVTARWHYSSAFVF---CGGKRNSMFIRSLLAGSFGRKQRQRQKKLYK 120
           +QLT+++PPL +PV A+WHY SAFVF         S    S++    G+K          
Sbjct: 61  IQLTSSMPPLYVPVVAKWHYLSAFVFFVVSNAIACSYAAISVMLSFCGKKSMVPIILTLD 120

Query: 121 IGDHRDGPSDGGAAVFRLRSRRAVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLL 180
           +       S  GAA        A+GV+G KGNSH+ WNK+C+VFG+FC Q AAS++LSL+
Sbjct: 121 LLMVALLFSSNGAAT-------AIGVMGYKGNSHVKWNKVCNVFGKFCNQVAASVVLSLI 180

Query: 181 GATSFLSLAVLSALRL 186
           G+  F+ L +L+A RL
Sbjct: 181 GSIVFVLLVMLTAFRL 187

BLAST of CmoCh17G002980.1 vs. ExPASy Swiss-Prot
Match: A7NW78 (CASP-like protein 1E2 OS=Vitis vinifera OX=29760 GN=VIT_05s0020g01820 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-22
Identity = 69/173 (39.88%), Postives = 97/173 (56.07%), Query Frame = 0

Query: 24  DLILRFVAMILTLAAAIVIGVDKQAKTVSLQLTAALPPLRIPVTARWHYSSAFVFCGGKR 83
           DL+LR VA+ LTL AA+++GVDKQ K VSLQL   LPP+ +PVTA+W Y SAFV+     
Sbjct: 31  DLVLRVVALALTLVAAVLLGVDKQTKVVSLQLLPTLPPMDVPVTAKWRYLSAFVY----- 90

Query: 84  NSMFIRSLLAGSFGRKQRQRQKKLYKIGDHRDGPSDGGA-------AVFRLRSRR----A 143
               + + +A S+          L  +G+ +     G A        V  L S      A
Sbjct: 91  --FVVSNAIACSYA-----ALSLLLSVGNSKGNKGLGLAITVMDLVMVALLFSSNGAAGA 150

Query: 144 VGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGATSFLSLAVLSALRL 186
           +G++G +GNS + W K+C+VFG+FC Q A +L LS  G  +F  L V++A  L
Sbjct: 151 IGLMGYEGNSRVRWGKVCNVFGKFCNQVAVALGLSFFGGLAFFLLVVMAAFAL 191

BLAST of CmoCh17G002980.1 vs. ExPASy TrEMBL
Match: A0A6J1H563 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111460147 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 3.4e-61
Identity = 146/198 (73.74%), Postives = 153/198 (77.27%), Query Frame = 0

Query: 1   MDGQRKAGFGVSDGSETTTARFCDLILRFVAMILTLAAAIVIGVDKQAKTVSLQLTAALP 60
           MDGQRKAGFGVSDGSETTTARFCDLILRFVAMILTLAAAIVIGVDKQAKTVSLQLTAALP
Sbjct: 1   MDGQRKAGFGVSDGSETTTARFCDLILRFVAMILTLAAAIVIGVDKQAKTVSLQLTAALP 60

Query: 61  PLRIPVTARWHYSSAFVF-----CGGKRNSMFIRSLLAGSFGRKQRQRQKKLYKIGDHRD 120
           PLRIPVTARWHYSSAFV+           + F   L A + G+ +R   +    + D   
Sbjct: 61  PLRIPVTARWHYSSAFVYFVVVNAIACSYAAFSLVLSAVNKGKGRRSFIRSAITVMDLLT 120

Query: 121 GP---SDGGAAVFRLRSRRAVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGAT 180
                S  GAA        AVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGAT
Sbjct: 121 VALLFSGFGAA-------XAVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGAT 180

Query: 181 SFLSLAVLSALRLPRGSN 191
           SFLSLAVLSALRLPRGSN
Sbjct: 181 SFLSLAVLSALRLPRGSN 191

BLAST of CmoCh17G002980.1 vs. ExPASy TrEMBL
Match: A0A6J1L415 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111498951 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 6.3e-60
Identity = 145/199 (72.86%), Postives = 153/199 (76.88%), Query Frame = 0

Query: 1   MDGQRKAGFGVSDGSETTT-ARFCDLILRFVAMILTLAAAIVIGVDKQAKTVSLQLTAAL 60
           MDGQRKAGFGVSDGSETTT ARFCDLILRFVAMILTLAAA+VIGVDKQAKTVSLQLTAAL
Sbjct: 1   MDGQRKAGFGVSDGSETTTMARFCDLILRFVAMILTLAAAVVIGVDKQAKTVSLQLTAAL 60

Query: 61  PPLRIPVTARWHYSSAFVF-----CGGKRNSMFIRSLLAGSFGRKQRQRQKKLYKIGDHR 120
           PPLRIPVTARWHYSSAFV+           + F   L A + G+ +R   +    + D  
Sbjct: 61  PPLRIPVTARWHYSSAFVYFVVVNAIACSYAAFSLVLSAVNKGKGRRSFIRSAITVMDLL 120

Query: 121 DGP---SDGGAAVFRLRSRRAVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGA 180
                 S  GAA        AVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGA
Sbjct: 121 TVALLFSGFGAAA-------AVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGA 180

Query: 181 TSFLSLAVLSALRLPRGSN 191
           TSFLSLAVLSALRLPRGSN
Sbjct: 181 TSFLSLAVLSALRLPRGSN 192

BLAST of CmoCh17G002980.1 vs. ExPASy TrEMBL
Match: A0A1S3C7G4 (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103497879 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.5e-45
Identity = 119/203 (58.62%), Postives = 135/203 (66.50%), Query Frame = 0

Query: 1   MDGQRKAGFGVSDGSE----TTTARFCDLILRFVAMILTLAAAIVIGVDKQAKTVSLQLT 60
           MDG RKAGFGV DGS     T T RFCDLI+RFVAMILTLAAA+VIGVDKQ KTV LQL 
Sbjct: 1   MDGHRKAGFGVPDGSRSETTTRTGRFCDLIVRFVAMILTLAAAVVIGVDKQTKTVPLQLA 60

Query: 61  AALPPLRIPVTARWHYSSAFVF--------CGGKRNSMFIRSLLAGSFGRKQRQRQKKLY 120
           A+LPPL +PVTARWHY S+FV+        C     S+ +  L  G    K R   +   
Sbjct: 61  ASLPPLHVPVTARWHYLSSFVYFVVANAIACSYAAFSLVLSLLNKG----KSRGFIRSAI 120

Query: 121 KIGDHRDGP---SDGGAAVFRLRSRRAVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLL 180
            + D        S  GAA        AVG IG +GNSHLNWNK+C+VFGRFCGQGAASLL
Sbjct: 121 IVMDILTVALLFSGFGAAA-------AVGAIGWRGNSHLNWNKMCNVFGRFCGQGAASLL 180

Query: 181 LSLLGATSFLSLAVLSALRLPRG 189
           LSLLGA +FLSL++LSA RL RG
Sbjct: 181 LSLLGAMAFLSLSLLSAFRLQRG 192

BLAST of CmoCh17G002980.1 vs. ExPASy TrEMBL
Match: A0A6J1CAL5 (CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111009734 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38
Identity = 111/195 (56.92%), Postives = 125/195 (64.10%), Query Frame = 0

Query: 1   MDGQRK-AGFGVSDGSET---TTARFCDLILRFVAMILTLAAAIVIGVDKQAKTVSLQLT 60
           MDGQ K  GF  ++   T     ARF DLILR VA++LTLAAA+VIG DKQ KTV LQL 
Sbjct: 1   MDGQMKPPGFHGAESRRTMAPAPARFYDLILRLVALLLTLAAAVVIGADKQTKTVPLQLA 60

Query: 61  AALPPLRIPVTARWHYSSA---FVFCGGKRNSMFIRSLLAGSFGRKQRQRQKKLYKIGDH 120
           AALPPL +PVTARWHY SA   FV       S    SLL  +  + + +  +    + D 
Sbjct: 61  AALPPLYVPVTARWHYLSALVYFVVANAIGCSYAALSLLLSAVNKGRSRSLRSAIIVMDI 120

Query: 121 RDGP---SDGGAAVFRLRSRRAVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLG 180
                  S  GAA        AVGVIG  GNSHL WNKIC+VFGRFCGQGAASLLLSLLG
Sbjct: 121 LTVALLFSGVGAAA-------AVGVIGRNGNSHLKWNKICNVFGRFCGQGAASLLLSLLG 180

Query: 181 ATSFLSLAVLSALRL 186
           ATSFLSL VL+ALRL
Sbjct: 181 ATSFLSLVVLAALRL 188

BLAST of CmoCh17G002980.1 vs. ExPASy TrEMBL
Match: A0A1S3VJF4 (CASP-like protein OS=Vigna radiata var. radiata OX=3916 GN=LOC106775596 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 6.8e-30
Identity = 84/195 (43.08%), Postives = 121/195 (62.05%), Query Frame = 0

Query: 1   MDGQRKAGFGVSDGSET-------TTARFCDLILRFVAMILTLAAAIVIGVDKQAKTVSL 60
           M+GQRK  F V +GSE        +  R CDL+LR +A +LTL AA+VIG DKQ   V +
Sbjct: 1   MEGQRKGSFNVMEGSEANGKRWCGSVVRTCDLVLRLLAFLLTLVAAVVIGADKQTAVVPI 60

Query: 61  QLTAALPPLRIPVTARWHYSSAFVFCGGKRNSM---FIRSLLAGSFGRKQRQRQKKLYKI 120
           +L  ++PPL +PV A+WHY SAFV+  G  N+M   +    L  S G++++  +  +  +
Sbjct: 61  KLVESMPPLYVPVAAKWHYLSAFVYFVG-ANAMACTYATLSLLLSLGKRRKWMETVITVL 120

Query: 121 GDHRDGP--SDGGAAVFRLRSRRAVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSL 180
                    S  GAA+       AVG++GL+GNSH++WNK+C++FG+FC Q AASL +SL
Sbjct: 121 DTLMVALLFSSNGAAI-------AVGLLGLQGNSHVHWNKVCNMFGKFCDQVAASLFISL 180

Query: 181 LGATSFLSLAVLSAL 184
           LG+ +FL L +L  L
Sbjct: 181 LGSITFLLLLLLPQL 187

BLAST of CmoCh17G002980.1 vs. TAIR 10
Match: AT4G15620.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 102.1 bits (253), Expect = 5.2e-22
Identity = 74/177 (41.81%), Postives = 99/177 (55.93%), Query Frame = 0

Query: 24  DLILRFVAMILTLAAAIVIGVDKQAKTVSLQLTAALPPLRIPVTARWHYSSAFVF----- 83
           +L +R +A+ILT+AAA V+GV KQ K VS++L   LPPL I  TA+  Y SAFV+     
Sbjct: 28  ELTMRVLALILTMAAATVLGVAKQTKVVSIKLIPTLPPLDITTTAKASYLSAFVYNISVN 87

Query: 84  ---CGGKRNSMFIRSLLAGSFGRKQRQRQKKLYKI---GDHRDGP---SDGGAAVFRLRS 143
              CG    S+ I  +  G       +R KKL  +   GD        S  GAA      
Sbjct: 88  AIACGYTAISIAILMISRG-------RRSKKLLMVVLLGDLVMVALLFSGTGAA------ 147

Query: 144 RRAVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGATSFLSLAVLSALRLP 187
             A+G++GL GN H+ W K+C VFG+FC + A SL L+LL A  F+ L VL A++LP
Sbjct: 148 -SAIGLMGLHGNKHVMWKKVCGVFGKFCHRAAPSLPLTLLAAVVFMFLVVLDAIKLP 190

BLAST of CmoCh17G002980.1 vs. TAIR 10
Match: AT4G15630.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-20
Identity = 66/182 (36.26%), Postives = 98/182 (53.85%), Query Frame = 0

Query: 16  ETTTARFCDLILRFVAMILTLAAAIVIGVDKQAKTVSLQLTAALPPLRIPVTARWHYSSA 75
           E+ + +  +L +R +A++LT+ AA V+GV KQ K V ++L   LPPL +  TA+  Y SA
Sbjct: 20  ESGSRKGLELTMRVLALVLTMVAATVLGVAKQTKVVPIKLIPTLPPLNVSTTAKASYLSA 79

Query: 76  FVF--------CGGKRNSMFIRSLLAGSFGRKQRQRQKKLYKIGDHRDGP---SDGGAAV 135
           FV+        CG    S+ I  +  G    K+ +       IGD        S  GAA 
Sbjct: 80  FVYNISANAIACGYTAISIVIVMISKG----KRSKSLLMAVLIGDLMMVALLFSSTGAA- 139

Query: 136 FRLRSRRAVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGATSFLSLAVLSALR 187
                  A+G++G  GN H+ W K+C VFG+FC Q A S+ ++L+ +  F+ L VL AL+
Sbjct: 140 ------GAIGLMGRHGNKHVMWKKVCGVFGKFCNQAAVSVAITLIASVVFMLLVVLDALK 190

BLAST of CmoCh17G002980.1 vs. TAIR 10
Match: AT4G20390.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-10
Identity = 52/167 (31.14%), Postives = 82/167 (49.10%), Query Frame = 0

Query: 27  LRFVAMILTLAAAIVIGVDKQAKTVSLQLTAALPPLRIPVTARWHYSSAFVFCGGKRNSM 86
           LR  A + TLAAAIV+ ++K+ KT+ +  T    P++  +TA++ ++ AFVF       +
Sbjct: 22  LRIFAFMATLAAAIVMSLNKETKTL-VVATIGTVPIKATLTAKFQHTPAFVFFVIANVMV 81

Query: 87  FIRSLL---AGSFGRKQRQRQKKLYKIG--DHRDG---PSDGGAAVFRLRSRRAVGVIGL 146
              +LL      F RK   +  +L  I   D  +     +   AAVF       V  +G 
Sbjct: 82  SFHNLLMIVVQIFSRKLEYKGLRLLSIAILDMLNATLVSAAANAAVF-------VAELGK 141

Query: 147 KGNSHLNWNKICDVFGRFCGQGAASLLLSLLGATSFLSLAVLSALRL 186
            GN H  WNK+CD F  +C  GA +++ +  G    L ++ +S  RL
Sbjct: 142 NGNKHAKWNKVCDRFTTYCDHGAGAIIAAFAGVILMLLVSAVSISRL 180

BLAST of CmoCh17G002980.1 vs. TAIR 10
Match: AT5G44550.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-08
Identity = 50/175 (28.57%), Postives = 83/175 (47.43%), Query Frame = 0

Query: 18  TTARFCDLI--LRFVAMILTLAAAIVIGVDKQAKTVSLQLTAALPPLRIPVTARWHYSSA 77
           T+ + C ++  LR +A   TL+AAIV+G++K+ KT  +       P++   TA++ ++ A
Sbjct: 11  TSGKSCKILLGLRLLAFSATLSAAIVMGLNKETKTFIVG-KVGNTPIQATFTAKFDHTPA 70

Query: 78  FVFCGGKRNSMFIRSLLAGS---FGRKQRQRQKKLYKIG--DHRDGPSDGGAAVFRLRSR 137
           FVF       +   +LL  +   FG K      +L  +   D  +      AA     + 
Sbjct: 71  FVFFVVANAMVSFHNLLMIALQIFGGKMEFTGFRLLSVAILDMLNVTLISAAA----NAA 130

Query: 138 RAVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGATSFLSLAVLSALRL 186
             +  +G  GN H  W+KICD F  +C  GA +L+ +  G    L ++  S  RL
Sbjct: 131 AFMAEVGKNGNKHARWDKICDRFATYCDHGAGALIAAFAGVILMLIISAASISRL 180

BLAST of CmoCh17G002980.1 vs. TAIR 10
Match: AT4G15610.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 50.1 bits (118), Expect = 2.3e-06
Identity = 48/188 (25.53%), Postives = 80/188 (42.55%), Query Frame = 0

Query: 1   MDGQRKAGFGVSDGSETTTARFCDLILRFVAMILTLAAAIVIGVDKQAKTVSLQLTAALP 60
           +D +R    G   G+ T +     ++LRFV    TL + +V+   KQ K + L  T    
Sbjct: 9   LDTERSTAPGT--GTTTKSCSMTQVVLRFVLFAATLTSIVVMVTSKQTKNIFLPGT---- 68

Query: 61  PLRIPVTARWHYSSAFVFCGGKRNSMF---IRSLLAGSFGRKQRQRQKKLYKIGDHRDGP 120
           P+RIP     +  +   F      + F   + + +  S  +K       L  +    D  
Sbjct: 69  PIRIPAAEFTNSPALIYFVVALSVACFYSIVSTFVTVSAFKKHSCSAVLLLNLA-IMDAV 128

Query: 121 SDGGAAVFRLRSRRAVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGATSFLSL 180
             G  A     +   V  +GLKGN  + W KIC ++ +FC     ++ +SL  +   L L
Sbjct: 129 MVGIVA-SATGAGGGVAYLGLKGNKEVRWGKICHIYDKFCRHVGGAIAVSLFASVVLLLL 188

Query: 181 AVLSALRL 186
           +++S L L
Sbjct: 189 SIISVLSL 188

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
B9HMP64.7e-2840.70CASP-like protein 1E1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_820934 PE=3 S... [more]
C6TBD04.0e-2743.27CASP-like protein 1E1 OS=Glycine max OX=3847 PE=2 SV=1[more]
C6SZP82.0e-2643.53CASP-like protein 1E2 OS=Glycine max OX=3847 PE=2 SV=1[more]
B9RT049.9e-2641.33CASP-like protein 1E1 OS=Ricinus communis OX=3988 GN=RCOM_0680180 PE=2 SV=1[more]
A7NW781.0e-2239.88CASP-like protein 1E2 OS=Vitis vinifera OX=29760 GN=VIT_05s0020g01820 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1H5633.4e-6173.74CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111460147 PE=3 SV=1[more]
A0A6J1L4156.3e-6072.86CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111498951 PE=3 SV=1[more]
A0A1S3C7G41.5e-4558.62CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103497879 PE=3 SV=1[more]
A0A6J1CAL54.0e-3856.92CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111009734 PE=3 SV=1[more]
A0A1S3VJF46.8e-3043.08CASP-like protein OS=Vigna radiata var. radiata OX=3916 GN=LOC106775596 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
AT4G15620.15.2e-2241.81Uncharacterised protein family (UPF0497) [more]
AT4G15630.12.8e-2036.26Uncharacterised protein family (UPF0497) [more]
AT4G20390.12.0e-1031.14Uncharacterised protein family (UPF0497) [more]
AT5G44550.11.9e-0828.57Uncharacterised protein family (UPF0497) [more]
AT4G15610.12.3e-0625.53Uncharacterised protein family (UPF0497) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006702Casparian strip membrane protein domainPFAMPF04535DUF588coord: 132..171
e-value: 1.0E-8
score: 35.1
coord: 19..79
e-value: 1.8E-9
score: 37.6
IPR006459Casparian strip membrane proteinTIGRFAMTIGR01569TIGR01569coord: 132..184
e-value: 8.6E-15
score: 52.9
NoneNo IPR availablePANTHERPTHR11615NITRATE, FORMATE, IRON DEHYDROGENASEcoord: 131..187
coord: 14..78
NoneNo IPR availablePANTHERPTHR11615:SF253CASP-LIKE PROTEIN 1E1coord: 131..187
coord: 14..78

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh17G002980CmoCh17G002980gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh17G002980.1:exon:5548CmoCh17G002980.1:exon:5548exon
CmoCh17G002980.1:exon:5547CmoCh17G002980.1:exon:5547exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh17G002980.1:three_prime_utrCmoCh17G002980.1:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh17G002980.1:cdsCmoCh17G002980.1:cds_2CDS
CmoCh17G002980.1:cdsCmoCh17G002980.1:cdsCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh17G002980.1:five_prime_utrCmoCh17G002980.1:five_prime_utrfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh17G002980.1CmoCh17G002980.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane