CmoCh17G002980.1 (mRNA) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACGCAGATCAAGTACCAATACTACCACTCCCTCACGTTTCCTTTCCTTCTTTCTGCACTATGTGGCGCCTTCAATGCCTTCCAACGCATCCAATTCCAAGCCCTAATTTCAACGCCTTCTGCAATTCCATCGCCTATGAATATGTTTCCTCCTCACATTCTCCAATTTCGACATCAATTTCTCTTCGATCTACGAATTTTTACTGCAGGAAGCGAATTAACTGCCAATGGACGGCCAGAGGAAGGCCGGATTCGGCGTATCGGACGGATCGGAGACGACGACGGCTAGGTTTTGTGATTTGATTTTGAGATTTGTGGCGATGATTTTGACTTTGGCTGCTGCTATCGTTATCGGCGTCGATAAGCAGGCGAAAACGGTGTCGCTTCAACTCACCGCCGCGTTGCCGCCGCTGCGCATTCCTGTTACTGCACGATGGCATTATTCATCTGCCTTCGTGTAAGCTTTACTTTCTAGTGGATTCTTCTTTTCTAAAACTCAAGATAATATATATATATATATTTGTCATTTTAATTATTTAATAATGTTTTTTTTTAATATTTCTCAATATTCATAAATTTAAAGCCTACCCCTTGCTATTTGAAAGATTCTCTGGTCATTTCCTAAAAGAAAAAATAGTTAAATTTTGTTTTTTCGTTTAATATTATTTTTTTGATATTTCATTTTCATTGAATGTCTATTTAATCCATGAAATTGGGATAGGTGTAGACATAAATAAATAAATAAATATATATATATATATATATATATATATATATATTCTGCTCACTTTTTATATATATATATCAAAATTATGGTACAAAATTACGTATATTTTTTCTTAGTAAATAAATAAAAAATAATGGCGGAATATTATGTTTTAATATTAAATTTGAGTTTTTTGAAATTATGTTAAAGATCCTATAAAATATTATTGAATTTCATACTATATTTTATTTTTTAATACAAATGATATTTAAAATTATAAATTATCATTAAATTTTTTAACGAATTTATATATATATATTATTGAATTTCATACTATATTTTTTTTTTAATACAAATGATATTAAAAATTATAAATTATCATTAAATTTTTTAAGGAATATATATATAATGAAAAAATCCCCTCCCGAGATGGGATCGAAATAGGAGAATTTAGGTTATTAAATATGGTGAATAAAAATTTTAAATTTTTGTAAAAAAAAATTAATAAAAAAAATAAAACTAATAATTGTATGAATTAAATTTAATTTTAAAATTTATTATTTTCTTAAATACGTGAGAATAATAATTTTATTTAGGTGATTTTGTATTAGGTATGAATTACTAACCAATAGTGATTTGTAGTAATAAATGGATTTTTTTTTCCTTTTTTATTTAGGTATTTTGTGGTGGTAAACGCAATAGCATGTTCATACGCAGCCTTCTCGCTGGTTCTTTCGGCCGTAAACAAAGGCAAAGGCAGAAGAAGCTTTATAAGATCGGCGATCACCGTGATGGACCTTCTGACGGTGGCGCTGCTGTTTTCCGGCTTCGGAGCCGCCGCGCCGTCGGTGTCATCGGCCTGAAAGGGAATTCACATCTTAATTGGAATAAAATTTGCGATGTCTTTGGAAGATTCTGTGGCCAAGGAGCTGCTTCCCTTCTCCTCTCACTGCTTGGAGCGACGTCGTTTCTCTCTCTTGCTGTGCTCTCTGCTTTGAGGCTTCCAAGGGGATCCAATTGAGAACAATAAATAAATAAATACAGCCTTTTCAATTTTAAATCTTCCTAGATAGTGTAAAATTTGGTGTTGTTTTTGTTAGGTTAAATGAGATATCTTATATCAAAAACGTGTTATCTTAGAGTATACATCGGGACTATGCTTGGGATTAGTGCTATGGATTGAACGTGTTATTATTGTCAACCCGAGCATAATTTACTTACAAATTAAGGTAAATACCTTCGATGAACAGGTCAAGAATTCAAA AACGCAGATCAAGTACCAATACTACCACTCCCTCACGTTTCCTTTCCTTCTTTCTGCACTATGTGGCGCCTTCAATGCCTTCCAACGCATCCAATTCCAAGCCCTAATTTCAACGCCTTCTGCAATTCCATCGCCTATGAATATGTTTCCTCCTCACATTCTCCAATTTCGACATCAATTTCTCTTCGATCTACGAATTTTTACTGCAGGAAGCGAATTAACTGCCAATGGACGGCCAGAGGAAGGCCGGATTCGGCGTATCGGACGGATCGGAGACGACGACGGCTAGGTTTTGTGATTTGATTTTGAGATTTGTGGCGATGATTTTGACTTTGGCTGCTGCTATCGTTATCGGCGTCGATAAGCAGGCGAAAACGGTGTCGCTTCAACTCACCGCCGCGTTGCCGCCGCTGCGCATTCCTGTTACTGCACGATGGCATTATTCATCTGCCTTCGTATTTTGTGGTGGTAAACGCAATAGCATGTTCATACGCAGCCTTCTCGCTGGTTCTTTCGGCCGTAAACAAAGGCAAAGGCAGAAGAAGCTTTATAAGATCGGCGATCACCGTGATGGACCTTCTGACGGTGGCGCTGCTGTTTTCCGGCTTCGGAGCCGCCGCGCCGTCGGTGTCATCGGCCTGAAAGGGAATTCACATCTTAATTGGAATAAAATTTGCGATGTCTTTGGAAGATTCTGTGGCCAAGGAGCTGCTTCCCTTCTCCTCTCACTGCTTGGAGCGACGTCGTTTCTCTCTCTTGCTGTGCTCTCTGCTTTGAGGCTTCCAAGGGGATCCAATTGAGAACAATAAATAAATAAATACAGCCTTTTCAATTTTAAATCTTCCTAGATAGTGTAAAATTTGGTGTTGTTTTTGTTAGGTTAAATGAGATATCTTATATCAAAAACGTGTTATCTTAGAGTATACATCGGGACTATGCTTGGGATTAGTGCTATGGATTGAACGTGTTATTATTGTCAACCCGAGCATAATTTACTTACAAATTAAGGTAAATACCTTCGATGAACAGGTCAAGAATTCAAA ATGGACGGCCAGAGGAAGGCCGGATTCGGCGTATCGGACGGATCGGAGACGACGACGGCTAGGTTTTGTGATTTGATTTTGAGATTTGTGGCGATGATTTTGACTTTGGCTGCTGCTATCGTTATCGGCGTCGATAAGCAGGCGAAAACGGTGTCGCTTCAACTCACCGCCGCGTTGCCGCCGCTGCGCATTCCTGTTACTGCACGATGGCATTATTCATCTGCCTTCGTATTTTGTGGTGGTAAACGCAATAGCATGTTCATACGCAGCCTTCTCGCTGGTTCTTTCGGCCGTAAACAAAGGCAAAGGCAGAAGAAGCTTTATAAGATCGGCGATCACCGTGATGGACCTTCTGACGGTGGCGCTGCTGTTTTCCGGCTTCGGAGCCGCCGCGCCGTCGGTGTCATCGGCCTGAAAGGGAATTCACATCTTAATTGGAATAAAATTTGCGATGTCTTTGGAAGATTCTGTGGCCAAGGAGCTGCTTCCCTTCTCCTCTCACTGCTTGGAGCGACGTCGTTTCTCTCTCTTGCTGTGCTCTCTGCTTTGAGGCTTCCAAGGGGATCCAATTGA MDGQRKAGFGVSDGSETTTARFCDLILRFVAMILTLAAAIVIGVDKQAKTVSLQLTAALPPLRIPVTARWHYSSAFVFCGGKRNSMFIRSLLAGSFGRKQRQRQKKLYKIGDHRDGPSDGGAAVFRLRSRRAVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGATSFLSLAVLSALRLPRGSN Homology
BLAST of CmoCh17G002980.1 vs. ExPASy Swiss-Prot
Match: B9HMP6 (CASP-like protein 1E1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_820934 PE=3 SV=2) HSP 1 Score: 125.9 bits (315), Expect = 4.7e-28 Identity = 81/199 (40.70%), Postives = 114/199 (57.29%), Query Frame = 0
BLAST of CmoCh17G002980.1 vs. ExPASy Swiss-Prot
Match: C6TBD0 (CASP-like protein 1E1 OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 4.0e-27 Identity = 74/171 (43.27%), Postives = 103/171 (60.23%), Query Frame = 0
BLAST of CmoCh17G002980.1 vs. ExPASy Swiss-Prot
Match: C6SZP8 (CASP-like protein 1E2 OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 2.0e-26 Identity = 74/170 (43.53%), Postives = 103/170 (60.59%), Query Frame = 0
BLAST of CmoCh17G002980.1 vs. ExPASy Swiss-Prot
Match: B9RT04 (CASP-like protein 1E1 OS=Ricinus communis OX=3988 GN=RCOM_0680180 PE=2 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 9.9e-26 Identity = 81/196 (41.33%), Postives = 110/196 (56.12%), Query Frame = 0
BLAST of CmoCh17G002980.1 vs. ExPASy Swiss-Prot
Match: A7NW78 (CASP-like protein 1E2 OS=Vitis vinifera OX=29760 GN=VIT_05s0020g01820 PE=2 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 1.0e-22 Identity = 69/173 (39.88%), Postives = 97/173 (56.07%), Query Frame = 0
BLAST of CmoCh17G002980.1 vs. ExPASy TrEMBL
Match: A0A6J1H563 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111460147 PE=3 SV=1) HSP 1 Score: 244.6 bits (623), Expect = 3.4e-61 Identity = 146/198 (73.74%), Postives = 153/198 (77.27%), Query Frame = 0
BLAST of CmoCh17G002980.1 vs. ExPASy TrEMBL
Match: A0A6J1L415 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111498951 PE=3 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 6.3e-60 Identity = 145/199 (72.86%), Postives = 153/199 (76.88%), Query Frame = 0
BLAST of CmoCh17G002980.1 vs. ExPASy TrEMBL
Match: A0A1S3C7G4 (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103497879 PE=3 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 1.5e-45 Identity = 119/203 (58.62%), Postives = 135/203 (66.50%), Query Frame = 0
BLAST of CmoCh17G002980.1 vs. ExPASy TrEMBL
Match: A0A6J1CAL5 (CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111009734 PE=3 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38 Identity = 111/195 (56.92%), Postives = 125/195 (64.10%), Query Frame = 0
BLAST of CmoCh17G002980.1 vs. ExPASy TrEMBL
Match: A0A1S3VJF4 (CASP-like protein OS=Vigna radiata var. radiata OX=3916 GN=LOC106775596 PE=3 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 6.8e-30 Identity = 84/195 (43.08%), Postives = 121/195 (62.05%), Query Frame = 0
BLAST of CmoCh17G002980.1 vs. TAIR 10
Match: AT4G15620.1 (Uncharacterised protein family (UPF0497) ) HSP 1 Score: 102.1 bits (253), Expect = 5.2e-22 Identity = 74/177 (41.81%), Postives = 99/177 (55.93%), Query Frame = 0
BLAST of CmoCh17G002980.1 vs. TAIR 10
Match: AT4G15630.1 (Uncharacterised protein family (UPF0497) ) HSP 1 Score: 96.3 bits (238), Expect = 2.8e-20 Identity = 66/182 (36.26%), Postives = 98/182 (53.85%), Query Frame = 0
BLAST of CmoCh17G002980.1 vs. TAIR 10
Match: AT4G20390.1 (Uncharacterised protein family (UPF0497) ) HSP 1 Score: 63.5 bits (153), Expect = 2.0e-10 Identity = 52/167 (31.14%), Postives = 82/167 (49.10%), Query Frame = 0
BLAST of CmoCh17G002980.1 vs. TAIR 10
Match: AT5G44550.1 (Uncharacterised protein family (UPF0497) ) HSP 1 Score: 57.0 bits (136), Expect = 1.9e-08 Identity = 50/175 (28.57%), Postives = 83/175 (47.43%), Query Frame = 0
BLAST of CmoCh17G002980.1 vs. TAIR 10
Match: AT4G15610.1 (Uncharacterised protein family (UPF0497) ) HSP 1 Score: 50.1 bits (118), Expect = 2.3e-06 Identity = 48/188 (25.53%), Postives = 80/188 (42.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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