CmoCh16G012990.1 (mRNA) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACCCACCATTTCTTTCCTCCATTAACTTCAAAGCTCTCAACTTTTTGTTCTCCCATGGAAGAAGTTTGGAAAGACATTAATCTCTCCTCTCTCCACTCCCGTTCCGACCATGATTTCCCCTCCGCCGCCGCTACTCCCATCAGCCTCCACCTCCACCACCAACACTCCGCCGCCAACTTCCGCCACATCATCCTCCAAGACTTCCTCTCTTCTTCCACTTCAAAACTTGACTCCTCCTCCGCCGCCGCCGCTGCTGCCGTCGCTGCCGTTGCTCCTCCACCCACTGTCTTATCCTTGAATTCCACCCGCGAATTGCATTTCCCAGATAACGCCGCCGTCGCCGCCGCCGCCGCCGCCCACTTCTGCCACCCGAACCCTTCCTCCGCCACCGCCGCCTTCCACAGCCCCTTTGACCAAGTCCTCGGCCCACCGCCTTTCGCTAAGAAAAGGGTCCCTGATTCTGACTCGAATAACTCCGGCGACCGGCGGCAGAAACGCATGATAAAAAATCGGGAATCCGCCGCCCGATCTCGTGCTCGAAAACAGGTTAAACAAATACACAATTTAAAAAAAAAAAAAAAAAAATTCTAAAATAACTTAATTTTAATAAATTTTTATTGGGTTTAATCCACAGGCTTACACAAACGAGCTGGAGCTTGAAGTGGCACATTTAATGGAGGAAAATGCAAGATTAAGGAGACAGCACGAAGAGGTAAATTAAATTAAATTAAATTTTTGTTTAATATTTATTTTTATTACAAAAAGACAATAAACCTTAAAACGACGGTTGTGTCTGGCAGCTCCGAGCAGCTGCGACGGCGCAAACGTCAAGGAAGCACAGGCTGCAGAGGACCTCAACGGCGCCGTTTTAGGAACAGAGGGTTTTTTTTGGGAATTATTAATATGTGAAGTTAATTTTGTGGGGATGAAAAGGAAGGAATTTGTGATGTTTGCAGAAAAACCCTTTTGTTATTTAGGAACAAAAATTTAACAAAGACACTAATTTTCAACCCTCTTCAAGCTCAT ACCCACCATTTCTTTCCTCCATTAACTTCAAAGCTCTCAACTTTTTGTTCTCCCATGGAAGAAGTTTGGAAAGACATTAATCTCTCCTCTCTCCACTCCCGTTCCGACCATGATTTCCCCTCCGCCGCCGCTACTCCCATCAGCCTCCACCTCCACCACCAACACTCCGCCGCCAACTTCCGCCACATCATCCTCCAAGACTTCCTCTCTTCTTCCACTTCAAAACTTGACTCCTCCTCCGCCGCCGCCGCTGCTGCCGTCGCTGCCGTTGCTCCTCCACCCACTGTCTTATCCTTGAATTCCACCCGCGAATTGCATTTCCCAGATAACGCCGCCGTCGCCGCCGCCGCCGCCGCCCACTTCTGCCACCCGAACCCTTCCTCCGCCACCGCCGCCTTCCACAGCCCCTTTGACCAAGTCCTCGGCCCACCGCCTTTCGCTAAGAAAAGGGTCCCTGATTCTGACTCGAATAACTCCGGCGACCGGCGGCAGAAACGCATGATAAAAAATCGGGAATCCGCCGCCCGATCTCGTGCTCGAAAACAGGCTTACACAAACGAGCTGGAGCTTGAAGTGGCACATTTAATGGAGGAAAATGCAAGATTAAGGAGACAGCACGAAGAGCTCCGAGCAGCTGCGACGGCGCAAACGTCAAGGAAGCACAGGCTGCAGAGGACCTCAACGGCGCCGTTTTAGGAACAGAGGGTTTTTTTTGGGAATTATTAATATGTGAAGTTAATTTTGTGGGGATGAAAAGGAAGGAATTTGTGATGTTTGCAGAAAAACCCTTTTGTTATTTAGGAACAAAAATTTAACAAAGACACTAATTTTCAACCCTCTTCAAGCTCAT ATGGAAGAAGTTTGGAAAGACATTAATCTCTCCTCTCTCCACTCCCGTTCCGACCATGATTTCCCCTCCGCCGCCGCTACTCCCATCAGCCTCCACCTCCACCACCAACACTCCGCCGCCAACTTCCGCCACATCATCCTCCAAGACTTCCTCTCTTCTTCCACTTCAAAACTTGACTCCTCCTCCGCCGCCGCCGCTGCTGCCGTCGCTGCCGTTGCTCCTCCACCCACTGTCTTATCCTTGAATTCCACCCGCGAATTGCATTTCCCAGATAACGCCGCCGTCGCCGCCGCCGCCGCCGCCCACTTCTGCCACCCGAACCCTTCCTCCGCCACCGCCGCCTTCCACAGCCCCTTTGACCAAGTCCTCGGCCCACCGCCTTTCGCTAAGAAAAGGGTCCCTGATTCTGACTCGAATAACTCCGGCGACCGGCGGCAGAAACGCATGATAAAAAATCGGGAATCCGCCGCCCGATCTCGTGCTCGAAAACAGGCTTACACAAACGAGCTGGAGCTTGAAGTGGCACATTTAATGGAGGAAAATGCAAGATTAAGGAGACAGCACGAAGAGCTCCGAGCAGCTGCGACGGCGCAAACGTCAAGGAAGCACAGGCTGCAGAGGACCTCAACGGCGCCGTTTTAG MEEVWKDINLSSLHSRSDHDFPSAAATPISLHLHHQHSAANFRHIILQDFLSSSTSKLDSSSAAAAAAVAAVAPPPTVLSLNSTRELHFPDNAAVAAAAAAHFCHPNPSSATAAFHSPFDQVLGPPPFAKKRVPDSDSNNSGDRRQKRMIKNRESAARSRARKQAYTNELELEVAHLMEENARLRRQHEELRAAATAQTSRKHRLQRTSTAPF Homology
BLAST of CmoCh16G012990.1 vs. ExPASy Swiss-Prot
Match: Q84JK2 (Protein FD OS=Arabidopsis thaliana OX=3702 GN=FD PE=1 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 5.7e-30 Identity = 103/227 (45.37%), Postives = 129/227 (56.83%), Query Frame = 0
BLAST of CmoCh16G012990.1 vs. ExPASy Swiss-Prot
Match: Q7PCC6 (bZIP transcription factor 27 OS=Arabidopsis thaliana OX=3702 GN=FDP PE=1 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 1.0e-23 Identity = 99/223 (44.39%), Postives = 118/223 (52.91%), Query Frame = 0
BLAST of CmoCh16G012990.1 vs. ExPASy Swiss-Prot
Match: Q9LES3 (ABSCISIC ACID-INSENSITIVE 5-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=DPBF3 PE=1 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.5e-11 Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0
BLAST of CmoCh16G012990.1 vs. ExPASy Swiss-Prot
Match: Q9C5Q2 (ABSCISIC ACID-INSENSITIVE 5-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=DPBF4 PE=1 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 4.2e-09 Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 0
BLAST of CmoCh16G012990.1 vs. ExPASy Swiss-Prot
Match: Q8RYD6 (ABSCISIC ACID-INSENSITIVE 5-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=DPBF2 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 5.7e-06 Identity = 59/164 (35.98%), Postives = 84/164 (51.22%), Query Frame = 0
BLAST of CmoCh16G012990.1 vs. ExPASy TrEMBL
Match: A0A6J1E646 (protein FD OS=Cucurbita moschata OX=3662 GN=LOC111431061 PE=4 SV=1) HSP 1 Score: 396.7 bits (1018), Expect = 5.9e-107 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
BLAST of CmoCh16G012990.1 vs. ExPASy TrEMBL
Match: A0A6J1HN91 (protein FD OS=Cucurbita maxima OX=3661 GN=LOC111465189 PE=4 SV=1) HSP 1 Score: 385.6 bits (989), Expect = 1.4e-103 Identity = 209/213 (98.12%), Postives = 209/213 (98.12%), Query Frame = 0
BLAST of CmoCh16G012990.1 vs. ExPASy TrEMBL
Match: A0A0A0L664 (BZIP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002610 PE=4 SV=1) HSP 1 Score: 308.1 bits (788), Expect = 2.8e-80 Identity = 173/217 (79.72%), Postives = 193/217 (88.94%), Query Frame = 0
BLAST of CmoCh16G012990.1 vs. ExPASy TrEMBL
Match: A0A5A7UAI3 (Protein FD OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold344G00510 PE=4 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 2.4e-79 Identity = 175/217 (80.65%), Postives = 185/217 (85.25%), Query Frame = 0
BLAST of CmoCh16G012990.1 vs. ExPASy TrEMBL
Match: A0A1S3BJW5 (protein FD OS=Cucumis melo OX=3656 GN=LOC103490672 PE=4 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 2.4e-79 Identity = 175/217 (80.65%), Postives = 185/217 (85.25%), Query Frame = 0
BLAST of CmoCh16G012990.1 vs. TAIR 10
Match: AT4G35900.1 (Basic-leucine zipper (bZIP) transcription factor family protein ) HSP 1 Score: 132.5 bits (332), Expect = 4.0e-31 Identity = 103/227 (45.37%), Postives = 129/227 (56.83%), Query Frame = 0
BLAST of CmoCh16G012990.1 vs. TAIR 10
Match: AT2G17770.2 (basic region/leucine zipper motif 27 ) HSP 1 Score: 111.7 bits (278), Expect = 7.3e-25 Identity = 99/223 (44.39%), Postives = 118/223 (52.91%), Query Frame = 0
BLAST of CmoCh16G012990.1 vs. TAIR 10
Match: AT3G56850.1 (ABA-responsive element binding protein 3 ) HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12 Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0
BLAST of CmoCh16G012990.1 vs. TAIR 10
Match: AT2G41070.1 (Basic-leucine zipper (bZIP) transcription factor family protein ) HSP 1 Score: 63.2 bits (152), Expect = 3.0e-10 Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 0
BLAST of CmoCh16G012990.1 vs. TAIR 10
Match: AT2G41070.3 (Basic-leucine zipper (bZIP) transcription factor family protein ) HSP 1 Score: 63.2 bits (152), Expect = 3.0e-10 Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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