CmoCh16G005330.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G005330.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr16: 2586881 .. 2589180 (+)
Sequence length216
RNA-Seq ExpressionCmoCh16G005330.1
SyntenyCmoCh16G005330.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAGACAGAAATTTCAATTAGCAAAGTACCTCATCAGCAACAAAAAGTATATCATACTTCTTTAGCACGGCTTGGATCTGCAAGGTAAATAAAATTGATCATAGTGGCATCAATGGGAGAAATCTAAGGCCTTGAACAGCAGCCAAGATTTGGAGAAGTTGGGGGCAAGACGTGTGAGAGTAAAGATGGACTGTCTGTGACGAACTGTTGGATGAGTTTGTTCCAGAAGCAACAAAGAAACCTGTTATTGAGTTATACCATAGGTTCCGTGATCCATCTGTATTATAGTCTTCTCATTTTTTGTTCATACTCGAGCATCCAAAAAAATTGTTGTCCTCCAAGCTTTTGGTTTTAATCCCCTTAATCTCTTCAGCACACTCATCATGGAAAATGTAAATTATGTAATCCTCTTATAGAACGAAAAATTAAAGCAAACTAAATATGAAAGGAGGAAAATAAAACAGAAAGAAGAGAACATAATTGGAAAAAGAAATAAAGAATAGACAACAAAACAAGGAAAGTCTTACTGTTGCCTACGCTTACTTTAAGCATTTCATGGTACAAACAGCTTACCTTCTCAAAATAAGTTGTAGGTGGGAGAATCACACCACCAGCCCCCATGACAGGTTCAGCGATGAACGCAGCAATCTGAAGTGGAAAATTAGACAAAATTAGACAAGGGAGAAAGATTCAATTATGGTATCATGTTATAGTCTAATTCGAAGGAGTATTCATGTTTACCGTCTCTGGCCCCTCCTTAAGTATAAGGTCCTCCAACCTTTTCGCTAATCTTGTTGAGAACTCTTCCTCTGTTTCACCTGACATAAGGATGCTCTTAAGTTAATGGCTGGAAAAAAAAGATCAAAGAATTTGAACCAACTGTATATGAAAGCATAGATCAGAACCTGGAAGATGGTAACGCCAGTAATGTGGACAATCAGTGTGCAGAACAAACGGAGCTGGAATGTCAAACCCTTGGTGCCCACCTGTGATACTGGAAAAATATATTCGACTACTTATTTCTTTTAACAAGAGGCATGAGGTATATTTTCTTTTCATTTAACTTACCCAGTAAGACTTGATGCTATTAATGTTGTACCATGAAAGCTGTTGGATAGAAGGGTGTAAGGAAAAGAAAATTAATTGAACAGAACAAAGGAAATGATGCAAATTAACATTAGCCAAGCGATTTGCGCTTACGCCTTTGACCGAGCTATGAACTTTTTCTTTTTTGGTCTTCCAAGTGCATTGTTATAGTACCATACCAGCTTGACCTATTACATGTTTTTTAGCACAAAAGGAATTAGTTGGTTGCATTTGTTGCAGAGCTATAAAAGGAAGGCTTTCACAGCTAATAAACCTTGATGTTTTAGTCACATTAGTTTAATAGTTTTTTCTTTCTTTATTTTCCCTGTTTACTCCTTTGGGAATCAGAATTAGATGCTTGAGTTTGGAGTAGAAAGAACCTGAGAATCATTGGCTTCTGAACCACTGTTAGTAAAAAAGACTTTTCCCATTTTTCTAGCGGTGAACATTTCAAGCAGTTCCTTTGCCAGATCCTGCCATATATATGAACAACAAAAGAGTGAAAGTAATGAAAAGTGAATTCTTTTTATCTCAAAGAAAGCAAAAGAAGTTTATACCAACGCAGGCCTAGTAGTACGATTCCAATAGGAGTGATAAAATGGCAAGGTATTTAGTTGTTTTACTGCAGCTGCCACAAGTCGTGGTTCATTTCCCCCTACAAATTCCAACATTGCCTTTACTAACTTAACTACACATTAATATATGCAGAATAAAAGTTCGTGTTCATGCAGATGTGGTACCTAAGGATGTGCACCATAGACCAGCAAGAGAATCAAGGTACTTCCTTCCATTAGTGTCATATACATATGAACCCTGTATCACCATGGAATCCAAACTCAAAGTAGAATGAAAAAAACAATATCTTCTGTCTTATTATCCATTCGTTTAACACACACGAACATTACCTCTGATCTTTCTATAACTAGTGGATTTTCATTTGTGCACTGCCATCCTGTAGTGAAAGGTGCAAGCATATCATGCCCCTTAAACCTGTAATTACACCCTGTTTATGTTAAAACCATGCAGAAGAGTGCAAAGAAGGAACAAATAGTTAAAGTTTAACCCAATGTACCCTGGATCCTCTGTTTGTGCTGAAGCCTGTGTACTGTATAAACTGGACATGATGATATGTTCATGTGAAGCTCTTCTAGAAGCAGCAAAGGACTATTACCAAGAAGCATAGGACAAATAATACGTAAGGGGCAGTAA

mRNA sequence

ATGATGAAGACAGAAATTTCAATTAGCAAAGTACCTCATCAGCAACAAAAAGTATATCATACTTCTTTAGCACGGCTTGGATCTGCAAGAATAAAAGTTCGTGTTCATGCAGATGTGGTACCTAAGGATGTGCACCATAGACCAGCAAGAGAATCAAGAAGCAGCAAAGGACTATTACCAAGAAGCATAGGACAAATAATACGTAAGGGGCAGTAA

Coding sequence (CDS)

ATGATGAAGACAGAAATTTCAATTAGCAAAGTACCTCATCAGCAACAAAAAGTATATCATACTTCTTTAGCACGGCTTGGATCTGCAAGAATAAAAGTTCGTGTTCATGCAGATGTGGTACCTAAGGATGTGCACCATAGACCAGCAAGAGAATCAAGAAGCAGCAAAGGACTATTACCAAGAAGCATAGGACAAATAATACGTAAGGGGCAGTAA

Protein sequence

MMKTEISISKVPHQQQKVYHTSLARLGSARIKVRVHADVVPKDVHHRPARESRSSKGLLPRSIGQIIRKGQ
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..71

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh16G005330CmoCh16G005330gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G005330.1:exon:11242CmoCh16G005330.1:exon:11242exon
CmoCh16G005330.1:exon:11241CmoCh16G005330.1:exon:11241exon
CmoCh16G005330.1:exon:11240CmoCh16G005330.1:exon:11240exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G005330.1:cdsCmoCh16G005330.1:cdsCDS
CmoCh16G005330.1:cdsCmoCh16G005330.1:cds_2CDS
CmoCh16G005330.1:cdsCmoCh16G005330.1:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh16G005330.1CmoCh16G005330.1-proteinpolypeptide