CmoCh16G002760.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G002760.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr16: 1241624 .. 1242398 (+)
Sequence length432
RNA-Seq ExpressionCmoCh16G002760.1
SyntenyCmoCh16G002760.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGCTGCACTCGAAGTTCTTCGTTCTTCTCCTTCTTACAAGCTTCCAGTTCCTCTCTGTTCGTGTGTTTTTTCCTCTATTTCTGCCATTCTGTTCATTCGTTCCAGTGAGCTCTTATGTATCAGAGTCGAGGATTCTCTCGGCAATCTCGGAATATCTTGCGAGCAAGATATCGCTGAAAGTAGGATTGTTGAAAGGAAGTTCATGGGGATGATTGAAACGCTAGAAAGTACGGGCTGTGGAGCTTTGAAATTGAAGTTGCAAGATTTCTGCTATTGGAATAACTCAGGCGAGGCCGAAGAACAGGTGGTCGAGGAGAAAGAAAGAAGCCCATTTCGATCGAGTCGCATTTATGGTTTTGATATGATTAAGCACCGATTCTCGTTGCCTAATTCAGGTATGCCTTAAAACCAACTTTGTGAAATATATAGCTCCGTGAAGATTTCAATATGTTCTTTCAGGCCCCATTGATAACCATGGTTTTGGAGGGTGAATGTTAAGCTTAAACCCTACTTGTTTCTTTAGTTAAGCTTCTTTCAGAATCTGGCTATGAATTCAAATGTCTCTTTAGTGAAGATGAACATATGGTAAAGAAATTGTGAGAAACTAAGTACAAATTTCAAAAACCAATAACCAAATGGTTATAAAACCTGAGTTTAAACAACACTCTTAAAAATGGGGTTTGAATTTGCATCAGTTTTCTTACATTAGATGTTTATTTGGTCTGTACTTGCCTTCAGGATACAAACACTGTGCACAGGAACCCACTACATAA

mRNA sequence

TCTGCTGCACTCGAAGTTCTTCGTTCTTCTCCTTCTTACAAGCTTCCAGTTCCTCTCTGTTCGTGTGTTTTTTCCTCTATTTCTGCCATTCTGTTCATTCGTTCCAGTGAGCTCTTATGTATCAGAGTCGAGGATTCTCTCGGCAATCTCGGAATATCTTGCGAGCAAGATATCGCTGAAAGTAGGATTGTTGAAAGGAAGTTCATGGGGATGATTGAAACGCTAGAAAGTACGGGCTGTGGAGCTTTGAAATTGAAGTTGCAAGATTTCTGCTATTGGAATAACTCAGGCGAGGCCGAAGAACAGGTGGTCGAGGAGAAAGAAAGAAGCCCATTTCGATCGAGTCGCATTTATGGTTTTGATATGATTAAGCACCGATTCTCGTTGCCTAATTCAGGATACAAACACTGTGCACAGGAACCCACTACATAA

Coding sequence (CDS)

ATGGGGATGATTGAAACGCTAGAAAGTACGGGCTGTGGAGCTTTGAAATTGAAGTTGCAAGATTTCTGCTATTGGAATAACTCAGGCGAGGCCGAAGAACAGGTGGTCGAGGAGAAAGAAAGAAGCCCATTTCGATCGAGTCGCATTTATGGTTTTGATATGATTAAGCACCGATTCTCGTTGCCTAATTCAGGATACAAACACTGTGCACAGGAACCCACTACATAA

Protein sequence

MGMIETLESTGCGALKLKLQDFCYWNNSGEAEEQVVEEKERSPFRSSRIYGFDMIKHRFSLPNSGYKHCAQEPTT
Homology
[Close]
BLAST of CmoCh16G002760.1 vs. NCBI nr
Match: KAG6576860.1 (Potassium transporter 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.9 bits (398), Expect = 3.4e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1    MGMIETLESTGCGALKLKLQDFCYWNNSGEAEEQVVEEKERSPFRSSRIYGFDMIKHRFS 60
            MGMIETLESTGCGALKLKLQDFCYWNNSGEA+EQVVE KERSPFRSSRIYGFDMIKHRFS
Sbjct: 1549 MGMIETLESTGCGALKLKLQDFCYWNNSGEAKEQVVEVKERSPFRSSRIYGFDMIKHRFS 1608

Query: 61   LPNSGYKHCAQEPTT 76
            LPNSGYKHCAQEPTT
Sbjct: 1609 LPNSGYKHCAQEPTT 1623

[Close]
BLAST of CmoCh16G002760.1 vs. NCBI nr
Match: KAG7014884.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1   MGMIETLESTGCGALKLKLQDFCYWNNSGEAEEQVVEEKERSPFRSSRIYGFDMIKHRFS 60
           MGMIETLESTGCGALKLKLQDFCYWNNSGEAEEQVVEEKERSPFRSSRIYGFDMIKHRFS
Sbjct: 627 MGMIETLESTGCGALKLKLQDFCYWNNSGEAEEQVVEEKERSPFRSSRIYGFDMIKHRFS 686

Query: 61  LPNS 65
           LPNS
Sbjct: 687 LPNS 690

The following BLAST results are available for this feature:
BLAST of CmoCh16G002760.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002760.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002760.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6576860.13.4e-3597.33Potassium transporter 7, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7014884.11.4e-28100.00Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
BLAST of CmoCh16G002760.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh16G002760CmoCh16G002760gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G002760.1:exon:7849CmoCh16G002760.1:exon:7849exon
CmoCh16G002760.1:exon:7850CmoCh16G002760.1:exon:7850exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G002760.1:five_prime_utrCmoCh16G002760.1:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G002760.1:cdsCmoCh16G002760.1:cdsCDS
CmoCh16G002760.1:cdsCmoCh16G002760.1:cds_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh16G002760.1CmoCh16G002760.1-proteinpolypeptide