CmoCh15G010290.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G010290.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pectin lyase-like superfamily protein
Location	Cmo_Chr15: 6192737 .. 6193184 (+)
Sequence length	366
RNA-Seq Expression	CmoCh15G010290.1
Synteny	CmoCh15G010290.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTATCCAAGAGCTTACTATCTTGGCTCCCGTTACCGTACCCAACATCGACGGAATCAATCCAGGTTCCCTTCTTCTTCACCTTTAAAACCTTAGGGTTCTTTTCTTTGTCAGTCCCTCTCCCTAATACTCTATTCAATTTATCAGATTCTTGTTTCAACACTCAAATCGAAGACTGCTACATTGTCTCCAGAGACGATTGCATTGCCATCGAGAGCGGATGGGACCAATATGGTATCAAGTTCGGAATGCCGACCGAGGACCTTGTCATTCGCCGCCTCACTTGCATCTCACCAGATTCTGCAGGTATCGTCCTTGGCAGCGAAATGTCTGGCAGAATTCGCAACATTAGGATCGAAAACGTCACTGCAATCAATACACAGTCTGCTGTCAGAATTAAAACCGCTCGCGGACGAGGTGGTTTCGTCAAGGACATTTTCGTCTGA

mRNA sequence

ATGATTATCCAAGAGCTTACTATCTTGGCTCCCGTTACCGTACCCAACATCGACGGAATCAATCCAGATTCTTGTTTCAACACTCAAATCGAAGACTGCTACATTGTCTCCAGAGACGATTGCATTGCCATCGAGAGCGGATGGGACCAATATGGTATCAAGTTCGGAATGCCGACCGAGGACCTTGTCATTCGCCGCCTCACTTGCATCTCACCAGATTCTGCAGGTATCGTCCTTGGCAGCGAAATGTCTGGCAGAATTCGCAACATTAGGATCGAAAACGTCACTGCAATCAATACACAGTCTGCTGTCAGAATTAAAACCGCTCGCGGACGAGGTGGTTTCGTCAAGGACATTTTCGTCTGA

Coding sequence (CDS)

ATGATTATCCAAGAGCTTACTATCTTGGCTCCCGTTACCGTACCCAACATCGACGGAATCAATCCAGATTCTTGTTTCAACACTCAAATCGAAGACTGCTACATTGTCTCCAGAGACGATTGCATTGCCATCGAGAGCGGATGGGACCAATATGGTATCAAGTTCGGAATGCCGACCGAGGACCTTGTCATTCGCCGCCTCACTTGCATCTCACCAGATTCTGCAGGTATCGTCCTTGGCAGCGAAATGTCTGGCAGAATTCGCAACATTAGGATCGAAAACGTCACTGCAATCAATACACAGTCTGCTGTCAGAATTAAAACCGCTCGCGGACGAGGTGGTTTCGTCAAGGACATTTTCGTCTGA

Protein sequence

MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTEDLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIFV

Homology

[Close]

BLAST of CmoCh15G010290.1 vs. ExPASy Swiss-Prot
Match: A7PZL3 (Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.2e-45
Identity = 84/121 (69.42%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTE 60
           ++IQ +TILAPV  PN DGINPDSC NT+IEDCYIVS DDC+A++SGWD+YGI +GMPT+
Sbjct: 233 ILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTK 292

Query: 61  DLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIF 120
            LVIRRLTCISP SA I LGSEMSG I+++R E++ AIN++S +RIKT  GRGG+VKDI+
Sbjct: 293 QLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIY 352

Query: 121 V 122
           V
Sbjct: 353 V 353

[Close]

BLAST of CmoCh15G010290.1 vs. ExPASy Swiss-Prot
Match: P27644 (Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-13
Identity = 46/121 (38.02%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 7   TILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTED----- 66
           TI+AP   PN DG NP+SC N  I        DDCIA+++G      K G   ED     
Sbjct: 62  TIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAG------KRGPDGEDDHLAE 121

Query: 67  --LVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKT-ARGRGGFVKD 120
              +  R   + P   G+V+GSEMSG + ++ +E+   I T   +R+KT AR  GG V +
Sbjct: 122 TRGITVRHCLMQPGHGGLVIGSEMSGGVHDVTVEDCDMIGTDRGLRLKTGARSGGGMVGN 176

[Close]

BLAST of CmoCh15G010290.1 vs. ExPASy Swiss-Prot
Match: Q9LW07 (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 40/121 (33.06%), Postives = 58/121 (47.93%), Query Frame = 0


Query: 3   IQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTEDL 62
           I  L I AP + PN DGI+  +  N  I+DC I + DDCIAI SG           T ++
Sbjct: 174 ISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNI 233

Query: 63  VIRRLTCISPDSAGIVLGS----EMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKD 120
            I  + C      GI +GS      +  + N+ ++N     T +  RIKT +G  G+ + 
Sbjct: 234 HISGIDC--GPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARM 281

[Close]

BLAST of CmoCh15G010290.1 vs. ExPASy Swiss-Prot
Match: Q9FY19 (Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-07
Identity = 38/121 (31.40%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 3   IQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTEDL 62
           IQ + I AP   PN DGI+  +    +IE C I + DDC+A+ +G           + ++
Sbjct: 220 IQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG-----------SSNI 279

Query: 63  VIRRLTCISPDSAGIVLGSEMSGRIRN----IRIENVTAINTQSAVRIKTARGRGGFVKD 120
            I+ LTC      G+ +GS   G  R+    + ++    I+TQ+ +RIKT +G  G    
Sbjct: 280 TIKDLTC--GPGHGMSIGSLGKGNSRSEVSFVHLDGAKFIDTQNGLRIKTWQGGSGLASH 327

[Close]

BLAST of CmoCh15G010290.1 vs. ExPASy Swiss-Prot
Match: Q9SFB7 (Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-06
Identity = 37/118 (31.36%), Postives = 55/118 (46.61%), Query Frame = 0


Query: 6   LTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTEDLVIR 65
           L + +P   PN DGI+     N  I+D  + + DDCI+I SG           +E++   
Sbjct: 232 LMVTSPADSPNTDGIHVSGTQNILIQDSIVRTGDDCISIVSG-----------SENVRAT 291

Query: 66  RLTCISPDSAGIVLGS----EMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDI 120
            +TC      GI +GS         + N+ +   T I T + VRIKT +G  G  K+I
Sbjct: 292 GITC--GPGHGISIGSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTWQGGHGMAKNI 336

[Close]

BLAST of CmoCh15G010290.1 vs. ExPASy TrEMBL
Match: A0A6J1E3E2 (probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430236 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.5e-56
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTE 60
           +IIQ LTILAPVTVPN DGINPDSC NT+IEDCYIVS DDCIAI+SGWDQYGIKFGMPTE
Sbjct: 226 VIIQGLTILAPVTVPNTDGINPDSCSNTRIEDCYIVSGDDCIAIKSGWDQYGIKFGMPTE 285

Query: 61  DLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIF 120
           DLVIRRLTCISPDSAGI LGSEMSG IRN+RIENVTAINTQSAVRIKTARGRGGFVKDIF
Sbjct: 286 DLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFVKDIF 345

Query: 121 V 122
           V
Sbjct: 346 V 346

[Close]

BLAST of CmoCh15G010290.1 vs. ExPASy TrEMBL
Match: A0A6J1E7Y4 (probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430234 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.8e-55
Identity = 110/121 (90.91%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTE 60
           +IIQ LTILAPVTVPN DGINPDSC N +IEDCYIVS DDCIAI+SGWDQYGIKFGMPTE
Sbjct: 343 VIIQGLTILAPVTVPNTDGINPDSCSNIRIEDCYIVSGDDCIAIKSGWDQYGIKFGMPTE 402

Query: 61  DLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIF 120
           DLVIRRLTCISPDSAGI LGSEMSG IRN+RIENVTAINTQSAVRIKTARGRGGFVKDIF
Sbjct: 403 DLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFVKDIF 462

Query: 121 V 122
           V
Sbjct: 463 V 463

[Close]

BLAST of CmoCh15G010290.1 vs. ExPASy TrEMBL
Match: A0A6J1E2G9 (probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430237 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.1e-55
Identity = 108/121 (89.26%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTE 60
           +IIQ LTILAPVT PN DGINPDSC NT+IEDCYIVS DDCIAI+SGWDQYGIKFGMPTE
Sbjct: 225 VIIQGLTILAPVTEPNTDGINPDSCSNTRIEDCYIVSGDDCIAIKSGWDQYGIKFGMPTE 284

Query: 61  DLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIF 120
           DL+IRRLTCISPDSAGI LGSEMSG IRN+RIENVTAINTQ+AVRIKTARGRGGFVKDIF
Sbjct: 285 DLIIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQAAVRIKTARGRGGFVKDIF 344

Query: 121 V 122
           V
Sbjct: 345 V 345

[Close]

BLAST of CmoCh15G010290.1 vs. ExPASy TrEMBL
Match: A0A6J1E8J0 (probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430374 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.7e-55
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTE 60
           +IIQ LTILAPVTVPN DGINPDSC NT+IEDCYIVS DDCIA++SGWDQYGIKFGMPTE
Sbjct: 192 VIIQGLTILAPVTVPNTDGINPDSCSNTRIEDCYIVSGDDCIAVKSGWDQYGIKFGMPTE 251

Query: 61  DLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIF 120
           DL+IRRLTCISPDSA I LGSEMSG IRN+RIENVTAINTQ+AVRIKTARGRGGFVKDIF
Sbjct: 252 DLIIRRLTCISPDSAAIALGSEMSGGIRNVRIENVTAINTQAAVRIKTARGRGGFVKDIF 311

Query: 121 V 122
           V
Sbjct: 312 V 312

[Close]

BLAST of CmoCh15G010290.1 vs. ExPASy TrEMBL
Match: A0A6J1E7Z5 (probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430246 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.7e-55
Identity = 109/121 (90.08%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTE 60
           +II  LTILAPVTVPN DGINPDSC NT+ EDCYIVS DDCIAI+SGWDQYGIKFGMPTE
Sbjct: 225 VIILGLTILAPVTVPNTDGINPDSCSNTRFEDCYIVSGDDCIAIKSGWDQYGIKFGMPTE 284

Query: 61  DLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIF 120
           DLVIRRLTCISPDSAGI LGSEMSG IRN+RIENVTAINTQSAVRIKTARGRGGFVKDIF
Sbjct: 285 DLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFVKDIF 344

Query: 121 V 122
           V
Sbjct: 345 V 345

[Close]

BLAST of CmoCh15G010290.1 vs. NCBI nr
Match: XP_023521226.1 (probable polygalacturonase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 227.3 bits (578), Expect = 7.3e-56
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTE 60
           +IIQ LTILAPVTVPN DGINPDSC NT+IEDCYIVS DDCIAI+SGWDQYGIKFGMPTE
Sbjct: 225 VIIQGLTILAPVTVPNTDGINPDSCSNTRIEDCYIVSGDDCIAIKSGWDQYGIKFGMPTE 284

Query: 61  DLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIF 120
           DLVIRRLTCISPDSAGI LGSEMSG IRN+RIENVTAINTQSAVRIKTARGRGGFVKDIF
Sbjct: 285 DLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFVKDIF 344

Query: 121 V 122
           V
Sbjct: 345 V 345

[Close]

BLAST of CmoCh15G010290.1 vs. NCBI nr
Match: XP_022922171.1 (probable polygalacturonase [Cucurbita moschata])

HSP 1 Score: 227.3 bits (578), Expect = 7.3e-56
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTE 60
           +IIQ LTILAPVTVPN DGINPDSC NT+IEDCYIVS DDCIAI+SGWDQYGIKFGMPTE
Sbjct: 226 VIIQGLTILAPVTVPNTDGINPDSCSNTRIEDCYIVSGDDCIAIKSGWDQYGIKFGMPTE 285

Query: 61  DLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIF 120
           DLVIRRLTCISPDSAGI LGSEMSG IRN+RIENVTAINTQSAVRIKTARGRGGFVKDIF
Sbjct: 286 DLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFVKDIF 345

Query: 121 V 122
           V
Sbjct: 346 V 346

[Close]

BLAST of CmoCh15G010290.1 vs. NCBI nr
Match: XP_022922170.1 (probable polygalacturonase [Cucurbita moschata])

HSP 1 Score: 224.9 bits (572), Expect = 3.6e-55
Identity = 110/121 (90.91%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTE 60
           +IIQ LTILAPVTVPN DGINPDSC N +IEDCYIVS DDCIAI+SGWDQYGIKFGMPTE
Sbjct: 343 VIIQGLTILAPVTVPNTDGINPDSCSNIRIEDCYIVSGDDCIAIKSGWDQYGIKFGMPTE 402

Query: 61  DLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIF 120
           DLVIRRLTCISPDSAGI LGSEMSG IRN+RIENVTAINTQSAVRIKTARGRGGFVKDIF
Sbjct: 403 DLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFVKDIF 462

Query: 121 V 122
           V
Sbjct: 463 V 463

[Close]

BLAST of CmoCh15G010290.1 vs. NCBI nr
Match: XP_023520463.1 (probable polygalacturonase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.9 bits (572), Expect = 3.6e-55
Identity = 110/121 (90.91%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTE 60
           +IIQ LTILAPVTVPN DGINPDSC NT+IEDCYIVS DDCIAI+SGWDQYGIKFGMPTE
Sbjct: 225 VIIQGLTILAPVTVPNTDGINPDSCSNTRIEDCYIVSGDDCIAIKSGWDQYGIKFGMPTE 284

Query: 61  DLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIF 120
           DLVIRRLTCISPDSAGI LGSEMSG IRN+RIENV AINTQSAVRIKTARGRGGFVKDIF
Sbjct: 285 DLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVIAINTQSAVRIKTARGRGGFVKDIF 344

Query: 121 V 122
           V
Sbjct: 345 V 345

[Close]

BLAST of CmoCh15G010290.1 vs. NCBI nr
Match: XP_023550020.1 (probable polygalacturonase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 109/121 (90.08%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTE 60
           +II+ LTILAPVTVPN DGINPDSC N +IEDCYIVS DDCIAI+SGWDQYGIKFGMPTE
Sbjct: 225 VIIRGLTILAPVTVPNTDGINPDSCSNIRIEDCYIVSGDDCIAIKSGWDQYGIKFGMPTE 284

Query: 61  DLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIF 120
           DLVIRRLTCISPDSAGI LGSEMSG IRN+RIENVTAINTQSAVRIKTARGRGGFVKDIF
Sbjct: 285 DLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFVKDIF 344

Query: 121 V 122
           V
Sbjct: 345 V 345

[Close]

BLAST of CmoCh15G010290.1 vs. TAIR 10
Match: AT3G48950.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 194.5 bits (493), Expect = 4.9e-50
Identity = 89/120 (74.17%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTE 60
           +I++ +T+LAPVTVPN DGINPDSC NT IEDCYIVS DDCIA++SGWDQYGIKFGMPT+
Sbjct: 216 VIVKSVTVLAPVTVPNTDGINPDSCTNTLIEDCYIVSGDDCIAVKSGWDQYGIKFGMPTQ 275

Query: 61  DLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIF 120
            L IRRLTCISP SAG+ LGSEMSG I+++RIE+VT  NT+SA+RIKTA GRG +VKDI+
Sbjct: 276 QLSIRRLTCISPKSAGVALGSEMSGGIKDVRIEDVTLTNTESAIRIKTAVGRGAYVKDIY 335

[Close]

BLAST of CmoCh15G010290.1 vs. TAIR 10
Match: AT4G23500.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.1e-49
Identity = 89/119 (74.79%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 3   IQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTEDL 62
           IQ LTILAPVTVPN DGINPDSC NT+IEDCYIVS DDCIA++SGWDQYGI +GMPT+ L
Sbjct: 240 IQGLTILAPVTVPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDQYGINYGMPTKQL 299

Query: 63  VIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIFV 122
           +IRRLTCISPDSA I LGSEMSG I ++R E++ AIN++S +RIKTA GRGG+VKD++V
Sbjct: 300 LIRRLTCISPDSAVIALGSEMSGGIEDVRAEDIVAINSESGIRIKTAIGRGGYVKDVYV 358

[Close]

BLAST of CmoCh15G010290.1 vs. TAIR 10
Match: AT2G23900.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 190.7 bits (483), Expect = 7.1e-49
Identity = 87/120 (72.50%), Postives = 105/120 (87.50%), Query Frame = 0


Query: 1   MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTE 60
           +I++ +TILAP+  PN DGINPDSC NT IEDCY+VS DDCIA++SGWDQ+GIK GMPT+
Sbjct: 227 VIVKGVTILAPIDSPNTDGINPDSCTNTLIEDCYVVSGDDCIAVKSGWDQFGIKVGMPTQ 286

Query: 61  DLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIF 120
            L IRRLTCISPDSAGI LGSEMSG I+++RIE++T + TQSA+RIKTA GRGG+VKDIF
Sbjct: 287 QLSIRRLTCISPDSAGIALGSEMSGGIKDVRIEDITLLQTQSAIRIKTAVGRGGYVKDIF 346

[Close]

BLAST of CmoCh15G010290.1 vs. TAIR 10
Match: AT3G61490.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 181.4 bits (459), Expect = 4.3e-46
Identity = 84/121 (69.42%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTE 60
           +I++ +TI+APV  PN DGINPDSC NT+IEDCYI+S DDCIA++SGWD+YGI FGMPT+
Sbjct: 215 IIVKGVTIIAPVKSPNTDGINPDSCTNTRIEDCYIISGDDCIAVKSGWDEYGISFGMPTK 274

Query: 61  DLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIF 120
            LVIRRLTCISP SA I LGSEMSG I ++R E++TA  T+S VRIKTA GRG FVK+I+
Sbjct: 275 HLVIRRLTCISPYSAAIALGSEMSGGIEDVRAEDITAYQTESGVRIKTAVGRGAFVKNIY 334

Query: 121 V 122
           V
Sbjct: 335 V 335

[Close]

BLAST of CmoCh15G010290.1 vs. TAIR 10
Match: AT3G61490.2 (Pectin lyase-like superfamily protein )

HSP 1 Score: 181.4 bits (459), Expect = 4.3e-46
Identity = 84/121 (69.42%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MIIQELTILAPVTVPNIDGINPDSCFNTQIEDCYIVSRDDCIAIESGWDQYGIKFGMPTE 60
           +I++ +TI+APV  PN DGINPDSC NT+IEDCYI+S DDCIA++SGWD+YGI FGMPT+
Sbjct: 215 IIVKGVTIIAPVKSPNTDGINPDSCTNTRIEDCYIISGDDCIAVKSGWDEYGISFGMPTK 274

Query: 61  DLVIRRLTCISPDSAGIVLGSEMSGRIRNIRIENVTAINTQSAVRIKTARGRGGFVKDIF 120
            LVIRRLTCISP SA I LGSEMSG I ++R E++TA  T+S VRIKTA GRG FVK+I+
Sbjct: 275 HLVIRRLTCISPYSAAIALGSEMSGGIEDVRAEDITAYQTESGVRIKTAVGRGAFVKNIY 334

Query: 121 V 122
           V
Sbjct: 335 V 335

The following BLAST results are available for this feature:

BLAST of CmoCh15G010290.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7PZL3	1.2e-45	69.42	Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 ...	[more]
P27644	3.6e-13	38.02	Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1	[more]
Q9LW07	1.6e-08	33.06	Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g1572...	[more]
Q9FY19	2.9e-07	31.40	Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1	[more]
Q9SFB7	1.1e-06	31.36	Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2	[more]

BLAST of CmoCh15G010290.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E3E2	3.5e-56	91.74	probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430236 PE=3 SV...	[more]
A0A6J1E7Y4	1.8e-55	90.91	probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430234 PE=3 SV...	[more]
A0A6J1E2G9	5.1e-55	89.26	probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430237 PE=3 SV...	[more]
A0A6J1E8J0	6.7e-55	88.43	probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430374 PE=3 SV...	[more]
A0A6J1E7Z5	6.7e-55	90.08	probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430246 PE=3 SV...	[more]

BLAST of CmoCh15G010290.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023521226.1	7.3e-56	91.74	probable polygalacturonase [Cucurbita pepo subsp. pepo]	[more]
XP_022922171.1	7.3e-56	91.74	probable polygalacturonase [Cucurbita moschata]	[more]
XP_022922170.1	3.6e-55	90.91	probable polygalacturonase [Cucurbita moschata]	[more]
XP_023520463.1	3.6e-55	90.91	probable polygalacturonase [Cucurbita pepo subsp. pepo]	[more]
XP_023550020.1	1.1e-54	90.08	probable polygalacturonase [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh15G010290.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48950.1	4.9e-50	74.17	Pectin lyase-like superfamily protein	[more]
AT4G23500.1	1.1e-49	74.79	Pectin lyase-like superfamily protein	[more]
AT2G23900.1	7.1e-49	72.50	Pectin lyase-like superfamily protein	[more]
AT3G61490.1	4.3e-46	69.42	Pectin lyase-like superfamily protein	[more]
AT3G61490.2	4.3e-46	69.42	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 1..119 e-value: 4.3E-17 score: 62.2
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..121 e-value: 3.7E-39 score: 136.7
None	No IPR available	PANTHER	PTHR31339	PECTIN LYASE-RELATED	coord: 1..121
None	No IPR available	PANTHER	PTHR31339:SF12	ENDO-POLYGALACTURONASE-LIKE PROTEIN	coord: 1..121
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 3..120

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh15G010290	CmoCh15G010290	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh15G010290.1:exon:5805	CmoCh15G010290.1:exon:5805	exon
CmoCh15G010290.1:exon:5806	CmoCh15G010290.1:exon:5806	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh15G010290.1:cds	CmoCh15G010290.1:cds	CDS
CmoCh15G010290.1:cds	CmoCh15G010290.1:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh15G010290.1	CmoCh15G010290.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity