![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CmoCh14G007290.1 (mRNA) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCTCTCTCTTCCTTCTCTCTCTTCCTTCTCTCTCTTCCTTCTCTCGCTCCTCTCGCTTTTCCGCCATTGTCAATTTGATTCTGTTCTGAGCGAAGAGGAGAAATCTTCACTTCCAGTCACTTCTCCATCTCTGTAAGCTCTTCAATTCACCGCATTTCCCCTTTTTTTTTCTTGTTTTTCCTCGATTTTAATTTTGATCCTTTCTGTTTTTTCCTTCAATTTCATCCTTCAATCCCTTAAATCCAACCTCCCTTTTCGTTTTCGTAATGCGGATTGTATAATTTGATCGATTGCCTTCGTGATTGTCGTCATTTCTCCTCTTGTGGACTGTGTGATTTGGGTTAGGGTTTTTGACGTCTCGATGTGGAGTTAGGGTTTCGGTACGCTTGATACCATTTCTTGGAATTTGGAGATTTAGATTCTTCTGCTGCTGGTCTATTTCCTCGAGAAGCTGGAGTTTTTGTACTGGTAGGTATTTTTCTTCTTCCTGTTGTTTTGTGTATTGGATCAAAAGTCTGAGATACGCTTGATTGCTTGGGGGATTTTGAGGTTTATTTGGCTGGATTTGAGGGGGCAATGTTAGAATAGTCATTTGAGATTTTGTTGGTTTGAAACTGTTCTGGTTAGAGTAATTGGTTAGACAGTGATGTCTATGAACAATAATAATCCGCCGAAGAGCCTTGGAGGGACTTCTTCATCGCCTTATGGAAATTCTGGTATAGTTCCACCGTCTATGGCAGCAAACGCCACATTTTCTCAGCCGCAAGCTCAATTAGGAGCTGGGTTTCAAAATCCATTTCAGCTGTCCCCTGCTCAGGTTCTTGCTCAAGCTACGTTAAAGGCGCATGCTCATGCCCAAGCTCAAGCTCAAGCAGTTCACGCGCAGTTTCAAGCTCAGCTACAAGCTCAAGGGCTGTCTTTGTCTCAGAGCCAGAATGTTGGTGGTGGGAACATGGGTTCTCCTTCGCCAGGATTTTCCACACCTGGTCTCGCTGGTGCAAAGCGGATTCCTCAAAAGCCACCAGTTCGGCCTCCTATTCTTTCTCCTGGTACCACATTTTCACCATTGAAAACAATGGAACTCACGCCTGCTGCTCGTAAAAAGAAGCAGAAGCTACCTGAGAAGCAGCTTCAGGATAAAGTTGCTGCAATCTTACCTGAATCTGCGCTCTACACTCAGCTGCTCGAGTTTGAGTCTCGTGTCGATGCTGCTCTTGCAAGAAAGAAAGTTGACATCCATGAAGCTCTTAAAAACCCGCCTTGTATCCAGAAAACTCTTCGAATTTATGTCTTCAACACATTTGCAAATCAGGTTAACACAATACCCAAAAAACCAAATGCCGATCCTCCTACCTGGACCCTTAAGATAATAGGTAGGATCTTGGAAGATGGAATAGATCCTGATCATCCTGGGGTGGTACAAAGATCAAACCCTTTGTACCCAAAATTTTCATCTTTCTTCAAGAGAGTAACTATTTCCTTGGACCAGAGGTTATATCCAGATAGTCACATCATAGTATGGGAGAATGCTCGATCACCGGCACCTCATGAGGGCTTTGAGGTGAAAAGAAAAGGGGATAAAGAATTTTCGGTTAACATTCGGTTAGAAATGAATTATATTCCAGAGAAATTTAAGCTGTCGCCTGCTTTGATGGAAGTTCTTGGTATTGAAGTTGATACTCGCCCAAGAATAATAGCGGCAATCTGGCATTATGTAAAGGCTAGGAAACTTCAGAATCCCAATGATCCATCTTTCTTTCATTGTGATCCACCTCTCCAAAAGGTATTTGGGGAAGACAAATTGAAATTCACCATGGTTTCGCAGAGAATATCACAACACTTGTTCCCTCCACAGCCCATACATCTGGAGCATAAGATTAAGCTTTCTGGGAATAGTCCAGCGGGTACAGCATGTTACGATGTGTTGGTTGACGTCCCTTTCCCAATTCACAGGGAATTGTCTGCTCTATTAGCCAACGCAGAGAAGAACAAGGAGATCGACACATGTGACGAAGCAATTTGTACAGCTATAAGGAAAATTCACGAGCATCGTCGAAGACGTGCTTTTTTCCTTGGATTCAGTCAGTCTCCTGTGGAGTTTATTGATGCCTTGATTGAATCTCAAGGCAAGGATCTCAAACTTCTTGCAGGAGAAGCTAGTCGAAATGCTGAAAAGGAGCGCCGGTCAGATTTCTTCAATCAACCATGGTATGTTTGTTCCTTATTTCATCTGTTTTTGCTTATTAGCATCATTTTTATTCATTCGCAGTTCATACGTTAATTCAGCGGATTTTCAATTTTCAATTTTCTTTTAACAACATTTTTGTTTCTCACCCGTGGCTGTGTGCAAGATATATTCATAACTTCCTCCCTTCTCTATAACTGTTTTGTTTTTGCATCATAGACACAAGTTATGCACTATATTGTTCTTTCTTTTCTCTTTCCAACAAAAGAGATTATTCTTTAAGCTTTTAGCTGCCGCCCTCACACAGAATCTTCAATAGGTTGCGGATTCTAAAATTGGGATTACCTGTTATTCCTTTTATCATCTTGATCTTGAATTTAAGTTCATGGTTGATTGAACAGGGTTGAAGATGCTGTCATCCGGTACATAAACCGAAAACCCACAGCAGGGAGCGATGTACCTGGAAGTACATGACTGGGTTCTTGTTGAGCTGCTATGGATTGTCATTTTTTGTTGGGATTTTCATTGGATTAGCATGCTACGATACATGTATGACACCCTTTAGTTTAGTAACAAACACCGGATGGTTGCGATGCCGTGCAAAGGCTTCATTAACGCACATGGTATGTGAATTCCATAAAACTCGCTCTTTTAGTCCAAGCAAGCTTTAACCATCAATTAGCTGGTGATGCCAATGCTTCATTAACAACATATGGTTTCTTCATAGTCATTTTCTTAGAGCACCCTTTATTGTAGCATGGAATATTTCTTGTAGTCGAATCTGCAACCATATAAAGTTGAGATTTTTTCTGGTAAAGCATTGTGTAGATGAAAGTTCATGATGATTTGTCAATTATTCCTTGAACATGTAGTTTGTAATCTAAATATCATGTTTCTTGATACTTGGAGGAGGTGCAACTAGAGAAATTCGAGATCGGCG TTCTCTCTCTTCCTTCTCTCTCTTCCTTCTCTCTCTTCCTTCTCTCGCTCCTCTCGCTTTTCCGCCATTGTCAATTTGATTCTGTTCTGAGCGAAGAGGAGAAATCTTCACTTCCAGTCACTTCTCCATCTCTGTAAGCTCTTCAATTCACCGCATTTCCCCTTTTTTTTTCTTGTTTTTCCTCGATTTTAATTTTGATCCTTTCTGTTTTTTCCTTCAATTTCATCCTTCAATCCCTTAAATCCAACCTCCCTTTTCGTTTTCGTAATGCGGATTGTATAATTTGATCGATTGCCTTCGTGATTGTCGTCATTTCTCCTCTTGTGGACTGTGTGATTTGGGTTAGGGTTTTTGACGTCTCGATGTGGAGTTAGGGTTTCGGTACGCTTGATACCATTTCTTGGAATTTGGAGATTTAGATTCTTCTGCTGCTGGTCTATTTCCTCGAGAAGCTGGAGTTTTTGTACTGGTAGGTATTTTTCTTCTTCCTGTTGTTTTGTGTATTGGATCAAAAGTCTGAGATACGCTTGATTGCTTGGGGGATTTTGAGGTTTATTTGGCTGGATTTGAGGGGGCAATGTTAGAATAGTCATTTGAGATTTTGTTGGTTTGAAACTGTTCTGGTTAGAGTAATTGGTTAGACAGTGATGTCTATGAACAATAATAATCCGCCGAAGAGCCTTGGAGGGACTTCTTCATCGCCTTATGGAAATTCTGGTATAGTTCCACCGTCTATGGCAGCAAACGCCACATTTTCTCAGCCGCAAGCTCAATTAGGAGCTGGGTTTCAAAATCCATTTCAGCTGTCCCCTGCTCAGGTTCTTGCTCAAGCTACGTTAAAGGCGCATGCTCATGCCCAAGCTCAAGCTCAAGCAGTTCACGCGCAGTTTCAAGCTCAGCTACAAGCTCAAGGGCTGTCTTTGTCTCAGAGCCAGAATGTTGGTGGTGGGAACATGGGTTCTCCTTCGCCAGGATTTTCCACACCTGGTCTCGCTGGTGCAAAGCGGATTCCTCAAAAGCCACCAGTTCGGCCTCCTATTCTTTCTCCTGGTACCACATTTTCACCATTGAAAACAATGGAACTCACGCCTGCTGCTCGTAAAAAGAAGCAGAAGCTACCTGAGAAGCAGCTTCAGGATAAAGTTGCTGCAATCTTACCTGAATCTGCGCTCTACACTCAGCTGCTCGAGTTTGAGTCTCGTGTCGATGCTGCTCTTGCAAGAAAGAAAGTTGACATCCATGAAGCTCTTAAAAACCCGCCTTGTATCCAGAAAACTCTTCGAATTTATGTCTTCAACACATTTGCAAATCAGGTTAACACAATACCCAAAAAACCAAATGCCGATCCTCCTACCTGGACCCTTAAGATAATAGGTAGGATCTTGGAAGATGGAATAGATCCTGATCATCCTGGGGTGGTACAAAGATCAAACCCTTTGTACCCAAAATTTTCATCTTTCTTCAAGAGAGTAACTATTTCCTTGGACCAGAGGTTATATCCAGATAGTCACATCATAGTATGGGAGAATGCTCGATCACCGGCACCTCATGAGGGCTTTGAGGTGAAAAGAAAAGGGGATAAAGAATTTTCGGTTAACATTCGGTTAGAAATGAATTATATTCCAGAGAAATTTAAGCTGTCGCCTGCTTTGATGGAAGTTCTTGGTATTGAAGTTGATACTCGCCCAAGAATAATAGCGGCAATCTGGCATTATGTAAAGGCTAGGAAACTTCAGAATCCCAATGATCCATCTTTCTTTCATTGTGATCCACCTCTCCAAAAGGTATTTGGGGAAGACAAATTGAAATTCACCATGGTTTCGCAGAGAATATCACAACACTTGTTCCCTCCACAGCCCATACATCTGGAGCATAAGATTAAGCTTTCTGGGAATAGTCCAGCGGGTACAGCATGTTACGATGTGTTGGTTGACGTCCCTTTCCCAATTCACAGGGAATTGTCTGCTCTATTAGCCAACGCAGAGAAGAACAAGGAGATCGACACATGTGACGAAGCAATTTGTACAGCTATAAGGAAAATTCACGAGCATCGTCGAAGACGTGCTTTTTTCCTTGGATTCAGTCAGTCTCCTGTGGAGTTTATTGATGCCTTGATTGAATCTCAAGGCAAGGATCTCAAACTTCTTGCAGGAGAAGCTAGTCGAAATGCTGAAAAGGAGCGCCGGTCAGATTTCTTCAATCAACCATGGGTTGAAGATGCTGTCATCCGGTACATAAACCGAAAACCCACAGCAGGGAGCGATGTACCTGGAAGTACATGACTGGGTTCTTGTTGAGCTGCTATGGATTGTCATTTTTTGTTGGGATTTTCATTGGATTAGCATGCTACGATACATGTATGACACCCTTTAGTTTAGTAACAAACACCGGATGGTTGCGATGCCGTGCAAAGGCTTCATTAACGCACATGGTATGTGAATTCCATAAAACTCGCTCTTTTAGTCCAAGCAAGCTTTAACCATCAATTAGCTGGTGATGCCAATGCTTCATTAACAACATATGGTTTCTTCATAGTCATTTTCTTAGAGCACCCTTTATTGTAGCATGGAATATTTCTTGTAGTCGAATCTGCAACCATATAAAGTTGAGATTTTTTCTGGTAAAGCATTGTGTAGATGAAAGTTCATGATGATTTGTCAATTATTCCTTGAACATGTAGTTTGTAATCTAAATATCATGTTTCTTGATACTTGGAGGAGGTGCAACTAGAGAAATTCGAGATCGGCG ATGTCTATGAACAATAATAATCCGCCGAAGAGCCTTGGAGGGACTTCTTCATCGCCTTATGGAAATTCTGGTATAGTTCCACCGTCTATGGCAGCAAACGCCACATTTTCTCAGCCGCAAGCTCAATTAGGAGCTGGGTTTCAAAATCCATTTCAGCTGTCCCCTGCTCAGGTTCTTGCTCAAGCTACGTTAAAGGCGCATGCTCATGCCCAAGCTCAAGCTCAAGCAGTTCACGCGCAGTTTCAAGCTCAGCTACAAGCTCAAGGGCTGTCTTTGTCTCAGAGCCAGAATGTTGGTGGTGGGAACATGGGTTCTCCTTCGCCAGGATTTTCCACACCTGGTCTCGCTGGTGCAAAGCGGATTCCTCAAAAGCCACCAGTTCGGCCTCCTATTCTTTCTCCTGGTACCACATTTTCACCATTGAAAACAATGGAACTCACGCCTGCTGCTCGTAAAAAGAAGCAGAAGCTACCTGAGAAGCAGCTTCAGGATAAAGTTGCTGCAATCTTACCTGAATCTGCGCTCTACACTCAGCTGCTCGAGTTTGAGTCTCGTGTCGATGCTGCTCTTGCAAGAAAGAAAGTTGACATCCATGAAGCTCTTAAAAACCCGCCTTGTATCCAGAAAACTCTTCGAATTTATGTCTTCAACACATTTGCAAATCAGGTTAACACAATACCCAAAAAACCAAATGCCGATCCTCCTACCTGGACCCTTAAGATAATAGGTAGGATCTTGGAAGATGGAATAGATCCTGATCATCCTGGGGTGGTACAAAGATCAAACCCTTTGTACCCAAAATTTTCATCTTTCTTCAAGAGAGTAACTATTTCCTTGGACCAGAGGTTATATCCAGATAGTCACATCATAGTATGGGAGAATGCTCGATCACCGGCACCTCATGAGGGCTTTGAGGTGAAAAGAAAAGGGGATAAAGAATTTTCGGTTAACATTCGGTTAGAAATGAATTATATTCCAGAGAAATTTAAGCTGTCGCCTGCTTTGATGGAAGTTCTTGGTATTGAAGTTGATACTCGCCCAAGAATAATAGCGGCAATCTGGCATTATGTAAAGGCTAGGAAACTTCAGAATCCCAATGATCCATCTTTCTTTCATTGTGATCCACCTCTCCAAAAGGTATTTGGGGAAGACAAATTGAAATTCACCATGGTTTCGCAGAGAATATCACAACACTTGTTCCCTCCACAGCCCATACATCTGGAGCATAAGATTAAGCTTTCTGGGAATAGTCCAGCGGGTACAGCATGTTACGATGTGTTGGTTGACGTCCCTTTCCCAATTCACAGGGAATTGTCTGCTCTATTAGCCAACGCAGAGAAGAACAAGGAGATCGACACATGTGACGAAGCAATTTGTACAGCTATAAGGAAAATTCACGAGCATCGTCGAAGACGTGCTTTTTTCCTTGGATTCAGTCAGTCTCCTGTGGAGTTTATTGATGCCTTGATTGAATCTCAAGGCAAGGATCTCAAACTTCTTGCAGGAGAAGCTAGTCGAAATGCTGAAAAGGAGCGCCGGTCAGATTTCTTCAATCAACCATGGGTTGAAGATGCTGTCATCCGGTACATAAACCGAAAACCCACAGCAGGGAGCGATGTACCTGGAAGTACATGA MSMNNNNPPKSLGGTSSSPYGNSGIVPPSMAANATFSQPQAQLGAGFQNPFQLSPAQVLAQATLKAHAHAQAQAQAVHAQFQAQLQAQGLSLSQSQNVGGGNMGSPSPGFSTPGLAGAKRIPQKPPVRPPILSPGTTFSPLKTMELTPAARKKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKVDIHEALKNPPCIQKTLRIYVFNTFANQVNTIPKKPNADPPTWTLKIIGRILEDGIDPDHPGVVQRSNPLYPKFSSFFKRVTISLDQRLYPDSHIIVWENARSPAPHEGFEVKRKGDKEFSVNIRLEMNYIPEKFKLSPALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSFFHCDPPLQKVFGEDKLKFTMVSQRISQHLFPPQPIHLEHKIKLSGNSPAGTACYDVLVDVPFPIHRELSALLANAEKNKEIDTCDEAICTAIRKIHEHRRRRAFFLGFSQSPVEFIDALIESQGKDLKLLAGEASRNAEKERRSDFFNQPWVEDAVIRYINRKPTAGSDVPGST Homology
BLAST of CmoCh14G007290.1 vs. ExPASy Swiss-Prot
Match: Q9FMT4 (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14170 PE=1 SV=1) HSP 1 Score: 795.0 bits (2052), Expect = 5.2e-229 Identity = 406/545 (74.50%), Postives = 462/545 (84.77%), Query Frame = 0
BLAST of CmoCh14G007290.1 vs. ExPASy Swiss-Prot
Match: Q96GM5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens OX=9606 GN=SMARCD1 PE=1 SV=2) HSP 1 Score: 286.6 bits (732), Expect = 6.0e-76 Identity = 164/461 (35.57%), Postives = 251/461 (54.45%), Query Frame = 0
BLAST of CmoCh14G007290.1 vs. ExPASy Swiss-Prot
Match: Q61466 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus OX=10090 GN=Smarcd1 PE=1 SV=3) HSP 1 Score: 286.6 bits (732), Expect = 6.0e-76 Identity = 164/461 (35.57%), Postives = 251/461 (54.45%), Query Frame = 0
BLAST of CmoCh14G007290.1 vs. ExPASy Swiss-Prot
Match: Q2TBN1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus OX=9913 GN=SMARCD1 PE=2 SV=1) HSP 1 Score: 283.5 bits (724), Expect = 5.1e-75 Identity = 163/461 (35.36%), Postives = 252/461 (54.66%), Query Frame = 0
BLAST of CmoCh14G007290.1 vs. ExPASy Swiss-Prot
Match: Q9VYG2 (Brahma-associated protein of 60 kDa OS=Drosophila melanogaster OX=7227 GN=Bap60 PE=1 SV=1) HSP 1 Score: 281.6 bits (719), Expect = 1.9e-74 Identity = 150/387 (38.76%), Postives = 225/387 (58.14%), Query Frame = 0
BLAST of CmoCh14G007290.1 vs. ExPASy TrEMBL
Match: A0A6J1F9A1 (SWI/SNF complex component SNF12 homolog OS=Cucurbita moschata OX=3662 GN=LOC111441979 PE=4 SV=1) HSP 1 Score: 1084.7 bits (2804), Expect = 0.0e+00 Identity = 544/544 (100.00%), Postives = 544/544 (100.00%), Query Frame = 0
BLAST of CmoCh14G007290.1 vs. ExPASy TrEMBL
Match: A0A6J1J3H9 (SWI/SNF complex component SNF12 homolog OS=Cucurbita maxima OX=3661 GN=LOC111481483 PE=4 SV=1) HSP 1 Score: 1077.8 bits (2786), Expect = 0.0e+00 Identity = 540/544 (99.26%), Postives = 542/544 (99.63%), Query Frame = 0
BLAST of CmoCh14G007290.1 vs. ExPASy TrEMBL
Match: A0A0A0LB48 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G585900 PE=4 SV=1) HSP 1 Score: 1042.0 bits (2693), Expect = 9.0e-301 Identity = 524/547 (95.80%), Postives = 532/547 (97.26%), Query Frame = 0
BLAST of CmoCh14G007290.1 vs. ExPASy TrEMBL
Match: A0A6J1DV59 (SWI/SNF complex component SNF12 homolog OS=Momordica charantia OX=3673 GN=LOC111023389 PE=4 SV=1) HSP 1 Score: 1041.6 bits (2692), Expect = 1.2e-300 Identity = 523/546 (95.79%), Postives = 528/546 (96.70%), Query Frame = 0
BLAST of CmoCh14G007290.1 vs. ExPASy TrEMBL
Match: A0A1S3BNG8 (SWI/SNF complex component SNF12 homolog OS=Cucumis melo OX=3656 GN=LOC103491785 PE=4 SV=1) HSP 1 Score: 1038.5 bits (2684), Expect = 9.9e-300 Identity = 523/547 (95.61%), Postives = 531/547 (97.07%), Query Frame = 0
BLAST of CmoCh14G007290.1 vs. TAIR 10
Match: AT5G14170.1 (SWIB/MDM2 domain superfamily protein ) HSP 1 Score: 795.0 bits (2052), Expect = 3.7e-230 Identity = 406/545 (74.50%), Postives = 462/545 (84.77%), Query Frame = 0
BLAST of CmoCh14G007290.1 vs. TAIR 10
Match: AT3G01890.1 (SWIB/MDM2 domain superfamily protein ) HSP 1 Score: 617.1 bits (1590), Expect = 1.4e-176 Identity = 313/436 (71.79%), Postives = 354/436 (81.19%), Query Frame = 0
BLAST of CmoCh14G007290.1 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein ) HSP 1 Score: 55.1 bits (131), Expect = 2.1e-07 Identity = 27/69 (39.13%), Postives = 39/69 (56.52%), Query Frame = 0
BLAST of CmoCh14G007290.1 vs. TAIR 10
Match: AT3G19080.1 (SWIB complex BAF60b domain-containing protein ) HSP 1 Score: 52.4 bits (124), Expect = 1.4e-06 Identity = 19/71 (26.76%), Postives = 38/71 (53.52%), Query Frame = 0
BLAST of CmoCh14G007290.1 vs. TAIR 10
Match: AT1G49520.1 (SWIB complex BAF60b domain-containing protein ) HSP 1 Score: 50.4 bits (119), Expect = 5.1e-06 Identity = 19/71 (26.76%), Postives = 38/71 (53.52%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|