CmoCh14G001080.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G001080.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	PRA1 family protein
Location	Cmo_Chr14: 499128 .. 501784 (+)
Sequence length	939
RNA-Seq Expression	CmoCh14G001080.1
Synteny	CmoCh14G001080.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGAATTTGGTATATCATACTTTGTCGCTGCAATTTTTTTGCGCGCGCGGTTTCTCTTGGCTTATGCCTACAATGTCTTAACCTCGTGGGTTCCATTTCATGTGCATCTCTTGGTGAAGAAAAACGAAAATACGCTGCGATTTCTTCCCTTCTTTTTTGTTGCGGTCCAAATTTGAATTGCCTTCTCTATAGTCTCAAGAAGTTTCAGAGGCCAAAAGTTTCCTTCCTTCATTCTTTTAGGGTTTACGCTCTCATTTGCAACTCAGAATCAGATCATCTCCCCAATTCGCTAACTTGAGATAGGCAGCCATGGATTGGGGCAACGTTACTGCTGAAGATCTGATCGATGCGCTTCGAGAGGTCGATTGGTCATCGCCTCCTCGGCCTATCTCCGAGTTCTTCGCTAGGTTCACTTTCCCCCGATCTTCCGCCAAGTGGAACAGCCGCCTCAAGTGCAATCTCTATTAGTACGATGACTTTCTCCTACAATTTATTCGAGTTAATCATTTCTTTATGTGTGTGTGTGTGTGTGTATATATATATATATATGAAATTTTGGCATCAATTTTTGCTGAGAGTCATGGTTGCTTAAGTGAGGCTGATTCACACTACCTGGTGCTTCTGATTGTAACGTATCGGTTCAGTTCGGCTTTCACGAATCCAGTCCACACGGAGCTATATGCTCTGAAAGCGAAATGGAACATGATTACGCGATGTTCAATTTGTAAAGGGAAAATCAAGTTATATGTCTGACGTTGTAGGCTCGACTGTTTGAGTTGGTGAATTTACATGTTATGCAAACAAGTTGAAATCTATATATGCGTTGCTTCTTTTATTTCTTCCAGTTTCCTAGGAAATCATGTCGTAATGTGTCCCAAATAGTTGATCATGGCTTATTCTAATTTACTTGTTAGGCAAACAAGCTGAAATCTATTCACGTCATTTCATTTATAATCTGGTTGCGATGCAGTGCCTCGTTCATCCTACTAATTTGGAATCTTAATTTCTTGCATTTGCAGTTACCGAACCAACTATTTCATTATGATTGTTTTCATTCTTGGTGAGTAAACTTTCTTATATCTGCATTTATTTGTGTACATTTCTTTTTATTGTTTTAAAATTCGTACAGTTTATCATCAAGTGTGTATTCTTGATCACAGCCTTGGGTTTTCTACGAAGGCCACTTGCTATTGTTGCTGCTTCTCTCACAGCACTTAGCATTGCTTTTCTGAATGACAGGTGAGCTGATAGCCACACACTGTAGATGACAATAAATATTATTAGCCTTTCTTGTGATGGGAATGTTGTTTATTCTTTGGCTTTCCATAGCATCAGGTAACCATACATGAAGAGGAAATTGGTGTCCTTACACGGAATTAGCTATCTTTATACTTCATGTCGTTTTCACGGTTATAGTTACTTCTAAAGTTGCTCTTTTGACCTTCCTACAACTAGCATAAGGGTTTAATTAAATAGTTCATAAAAACATTTTAGTAATAATATCAACAATACTTTTTGTTAATTTTTATTATTTATTTTCACAGCAGGTCTGAATATTGATATCTCTTTCCATCTTACTTTGAAATATCAATTGTTCCTCATACCTTTCCATATATTTGCAACTGGGATTTTCCGGTCCAATCATTTGTTCCTAAATGCATCAACAAATTCAAGCTTCAAAACTCTAAAAATAGTAGATGTAGCTTGTTAATAACCTCAACCTGTTAATGGACATTAGACTTCTTAATTACACTTGTTATCCAGAGTTGCAAGATATGCGGATACAAAATTTATGCTAATGTATTATTATTTTCTTTGTATCCTTTGATCAAGGAATCACGTGTTAGAATGTAGATAATATAGTGAGGTGCATGGATCCTTTGTTTTAATTCCAGGTGAAATTTGTTGGGACTGCCAAGTTTTTTTCATCGTTTTTTTACCACAGTTTTGCAGGCACATTCAGTGAGAAAGTAACCAGAACTGTTCGACAATTCTCTCCACATATGGCTGCAAAGATGAGACCTCCTCTTACGTACGTATCTTCCTCAATTTCCATGAATACAATTAGTCATCACTATAGATTTCATATTTGTTCAATAATTTTTCAGGCCTGTTATCCGTGGACGCCCATCAGCTAAAAGAGCAATATACATATGCGGACGTCCTCGATGGGTTTTTGTCTTGGTGTTCTCTTCTGGTAAAGATACTTTTTACCTATTGTCGGTGTACTTTTGCATATGAATTTAGAGGGCCCACTTCATCTATGTTTTTAAGTACTGATATTATCTTGGAGTGCATCTTTCAATCAAACTTTTTATTTTCTTTTGAATTTGATTTTTAGCATGATATATCTTTTGTGCTCTACGTTTTCTGATTTTTTCCTCATCTGATGTAGTGAGTTTCATGCTCTGGTTCATTTCTTGCGGTCTGTTGACTGTACTTTGGTCGCTTGCCTTTGGACTTCTTGGTATGTAGGCTTTATACAAAAATCTGTTTTTTTTTCCGTCTTATACTTTATGGTTGATTTTCTCAACCCCCCAACAAAATTTTCAGCCACTTTGCTTCATGCAAGCTTCAGAACACCTAACCTGAAAGCACGTCTAAACACATTCCGTGAGGAATTCCGTGCTGTTTGGCGCAATTATAGTGAACTGTAG

mRNA sequence

CGGAATTTGGTATATCATACTTTGTCGCTGCAATTTTTTTGCGCGCGCGGTTTCTCTTGGCTTATGCCTACAATGTCTTAACCTCGTGGGTTCCATTTCATGTGCATCTCTTGGTGAAGAAAAACGAAAATACGCTGCGATTTCTTCCCTTCTTTTTTGTTGCGGTCCAAATTTGAATTGCCTTCTCTATAGTCTCAAGAAGTTTCAGAGGCCAAAAGTTTCCTTCCTTCATTCTTTTAGGGTTTACGCTCTCATTTGCAACTCAGAATCAGATCATCTCCCCAATTCGCTAACTTGAGATAGGCAGCCATGGATTGGGGCAACGTTACTGCTGAAGATCTGATCGATGCGCTTCGAGAGGTCGATTGGTCATCGCCTCCTCGGCCTATCTCCGAGTTCTTCGCTAGGTTCACTTTCCCCCGATCTTCCGCCAAGTGGAACAGCCGCCTCAAGTGCAATCTCTATTATTACCGAACCAACTATTTCATTATGATTGTTTTCATTCTTGCCTTGGGTTTTCTACGAAGGCCACTTGCTATTGTTGCTGCTTCTCTCACAGCACTTAGCATTGCTTTTCTGAATGACAGTTTTGCAGGCACATTCAGTGAGAAAGTAACCAGAACTGTTCGACAATTCTCTCCACATATGGCTGCAAAGATGAGACCTCCTCTTACGCCTGTTATCCGTGGACGCCCATCAGCTAAAAGAGCAATATACATATGCGGACGTCCTCGATGGGTTTTTGTCTTGGTGTTCTCTTCTGTGAGTTTCATGCTCTGGTTCATTTCTTGCGGTCTGTTGACTGTACTTTGGTCGCTTGCCTTTGGACTTCTTGCCACTTTGCTTCATGCAAGCTTCAGAACACCTAACCTGAAAGCACGTCTAAACACATTCCGTGAGGAATTCCGTGCTGTTTGGCGCAATTATAGTGAACTGTAG

Coding sequence (CDS)

ATGGATTGGGGCAACGTTACTGCTGAAGATCTGATCGATGCGCTTCGAGAGGTCGATTGGTCATCGCCTCCTCGGCCTATCTCCGAGTTCTTCGCTAGGTTCACTTTCCCCCGATCTTCCGCCAAGTGGAACAGCCGCCTCAAGTGCAATCTCTATTATTACCGAACCAACTATTTCATTATGATTGTTTTCATTCTTGCCTTGGGTTTTCTACGAAGGCCACTTGCTATTGTTGCTGCTTCTCTCACAGCACTTAGCATTGCTTTTCTGAATGACAGTTTTGCAGGCACATTCAGTGAGAAAGTAACCAGAACTGTTCGACAATTCTCTCCACATATGGCTGCAAAGATGAGACCTCCTCTTACGCCTGTTATCCGTGGACGCCCATCAGCTAAAAGAGCAATATACATATGCGGACGTCCTCGATGGGTTTTTGTCTTGGTGTTCTCTTCTGTGAGTTTCATGCTCTGGTTCATTTCTTGCGGTCTGTTGACTGTACTTTGGTCGCTTGCCTTTGGACTTCTTGCCACTTTGCTTCATGCAAGCTTCAGAACACCTAACCTGAAAGCACGTCTAAACACATTCCGTGAGGAATTCCGTGCTGTTTGGCGCAATTATAGTGAACTGTAG

Protein sequence

MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFIMIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLHASFRTPNLKARLNTFREEFRAVWRNYSEL

Homology

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BLAST of CmoCh14G001080.1 vs. ExPASy Swiss-Prot
Match: Q9LZM7 (PRA1 family protein A1 OS=Arabidopsis thaliana OX=3702 GN=PRA1A1 PE=2 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.4e-88
Identity = 164/209 (78.47%), Postives = 180/209 (86.12%), Query Frame = 0


Query: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI 60
           MDWGNVT +DL DALREVDWSSPPRP SEFF+RFT P+S  KW+SRLKCNLYYYRTNYFI
Sbjct: 1   MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPKWDSRLKCNLYYYRTNYFI 60

Query: 61  MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120
           MIV IL LG L RPLAI AA LTALS+AFLNDSFAG+FSEK TRTVR+FSP +AAKMRPP
Sbjct: 61  MIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQLAAKMRPP 120

Query: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH 180
           LTPV RGRPS+KRAI++CG+PRWVFVL  S VSF LW+IS GLL V  +L    LAT+LH
Sbjct: 121 LTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRVSVALLIAHLATILH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 210
           AS RTPNLKAR NTFREEFRAVWRNYSE+
Sbjct: 181 ASLRTPNLKARFNTFREEFRAVWRNYSEI 209

[Close]

BLAST of CmoCh14G001080.1 vs. ExPASy Swiss-Prot
Match: Q8GWC3 (PRA1 family protein A2 OS=Arabidopsis thaliana OX=3702 GN=PRA1A2 PE=2 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 7.4e-83
Identity = 145/209 (69.38%), Postives = 175/209 (83.73%), Query Frame = 0


Query: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI 60
           MDW NV AED+I+ALREV+WS+PPR   EFF+RF FPRS +KW SRLKCNLYYYRTNYFI
Sbjct: 1   MDWDNVAAEDVIEALREVEWSTPPRSFGEFFSRFAFPRSFSKWKSRLKCNLYYYRTNYFI 60

Query: 61  MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120
           +++F+L L  + RPLA+V A+LTALSIAFLNDSFA +F+EK  RT+R FSPHMAAKMRPP
Sbjct: 61  LVIFVLGLALVTRPLALVGAALTALSIAFLNDSFAASFNEKFIRTIRHFSPHMAAKMRPP 120

Query: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH 180
             PVIRGR +A++ +Y+CG+PRWVFV+ F + S ++WF SCGLL VL++L   L   ++H
Sbjct: 121 HMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFSSCGLLWVLYALLTSLAVIIVH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 210
           AS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 181 ASIRTPNLKARLNTFREEFRAVWRNYSEL 209

[Close]

BLAST of CmoCh14G001080.1 vs. ExPASy Swiss-Prot
Match: Q8W115 (PRA1 family protein A3 OS=Arabidopsis thaliana OX=3702 GN=PRA1A3 PE=2 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 6.9e-81
Identity = 147/209 (70.33%), Postives = 176/209 (84.21%), Query Frame = 0


Query: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI 60
           MDW +V AED+I+ALREV+WS+ PR ++EFF+RF FPRS +KW SRLKCNLYYYRTNYFI
Sbjct: 1   MDWDSVAAEDVIEALREVEWSASPRSLAEFFSRFAFPRSFSKWMSRLKCNLYYYRTNYFI 60

Query: 61  MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120
           + VF+L L  + RPLAI+ A+LTALS+AFLNDSFA TF+EK+ RT+R FSPH+AAKMRPP
Sbjct: 61  LFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHLAAKMRPP 120

Query: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH 180
             PVIRGR + ++ +YICG+PR VFVL+  + SF+LWF SCGLL VL++L   LL  LLH
Sbjct: 121 HMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLYALTTALLMILLH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 210
           AS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 181 ASLRTPNLKARLNTFREEFRAVWRNYSEL 209

[Close]

BLAST of CmoCh14G001080.1 vs. ExPASy TrEMBL
Match: A0A6J1J7S7 (PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111482045 PE=3 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 3.5e-112
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI 60
           MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI
Sbjct: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI 60

Query: 61  MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120
           MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP
Sbjct: 61  MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120

Query: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH 180
           LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH
Sbjct: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 210
           ASFRTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 209

[Close]

BLAST of CmoCh14G001080.1 vs. ExPASy TrEMBL
Match: A0A6J1F5K4 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111442351 PE=3 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 3.5e-112
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI 60
           MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI
Sbjct: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI 60

Query: 61  MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120
           MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP
Sbjct: 61  MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120

Query: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH 180
           LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH
Sbjct: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 210
           ASFRTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 209

[Close]

BLAST of CmoCh14G001080.1 vs. ExPASy TrEMBL
Match: A0A5A7TML8 (PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G004700 PE=3 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.3e-109
Identity = 203/209 (97.13%), Postives = 207/209 (99.04%), Query Frame = 0


Query: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI 60
           MDWGNVTAEDL+DALREVDWSSPPRPISEFF+RFT PRSSAKWNSRLKCNLYYYRTNYFI
Sbjct: 1   MDWGNVTAEDLVDALREVDWSSPPRPISEFFSRFTIPRSSAKWNSRLKCNLYYYRTNYFI 60

Query: 61  MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120
           MIVFILALGFLRRPLAIVAA LTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP
Sbjct: 61  MIVFILALGFLRRPLAIVAAFLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120

Query: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH 180
           LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSF+LWFISCGLLTVLWSL+FGLLATLLH
Sbjct: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFLLWFISCGLLTVLWSLSFGLLATLLH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 210
           ASFRTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 209

[Close]

BLAST of CmoCh14G001080.1 vs. ExPASy TrEMBL
Match: A0A1S3B6M0 (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103486359 PE=3 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.3e-109
Identity = 203/209 (97.13%), Postives = 207/209 (99.04%), Query Frame = 0


Query: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI 60
           MDWGNVTAEDL+DALREVDWSSPPRPISEFF+RFT PRSSAKWNSRLKCNLYYYRTNYFI
Sbjct: 1   MDWGNVTAEDLVDALREVDWSSPPRPISEFFSRFTIPRSSAKWNSRLKCNLYYYRTNYFI 60

Query: 61  MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120
           MIVFILALGFLRRPLAIVAA LTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP
Sbjct: 61  MIVFILALGFLRRPLAIVAAFLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120

Query: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH 180
           LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSF+LWFISCGLLTVLWSL+FGLLATLLH
Sbjct: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFLLWFISCGLLTVLWSLSFGLLATLLH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 210
           ASFRTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 209

[Close]

BLAST of CmoCh14G001080.1 vs. ExPASy TrEMBL
Match: A0A0A0LFH8 (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G733900 PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 2.8e-109
Identity = 203/209 (97.13%), Postives = 206/209 (98.56%), Query Frame = 0


Query: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI 60
           MDWGNVTAEDLIDALREVDWSSPPRPISEFF+RFT PRSSAKWNSRLKCNLYYYRTNYFI
Sbjct: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFSRFTIPRSSAKWNSRLKCNLYYYRTNYFI 60

Query: 61  MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120
           MIVFILALGFLRRPLAIVAA LTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP
Sbjct: 61  MIVFILALGFLRRPLAIVAAFLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120

Query: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH 180
           LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSF+ WFISCGLLTVLWSL+FGLLATLLH
Sbjct: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFLFWFISCGLLTVLWSLSFGLLATLLH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 210
           ASFRTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 209

[Close]

BLAST of CmoCh14G001080.1 vs. TAIR 10
Match: AT5G02040.1 (prenylated RAB acceptor 1.A1 )

HSP 1 Score: 325.9 bits (834), Expect = 2.4e-89
Identity = 164/209 (78.47%), Postives = 180/209 (86.12%), Query Frame = 0


Query: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI 60
           MDWGNVT +DL DALREVDWSSPPRP SEFF+RFT P+S  KW+SRLKCNLYYYRTNYFI
Sbjct: 1   MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPKWDSRLKCNLYYYRTNYFI 60

Query: 61  MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120
           MIV IL LG L RPLAI AA LTALS+AFLNDSFAG+FSEK TRTVR+FSP +AAKMRPP
Sbjct: 61  MIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQLAAKMRPP 120

Query: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH 180
           LTPV RGRPS+KRAI++CG+PRWVFVL  S VSF LW+IS GLL V  +L    LAT+LH
Sbjct: 121 LTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRVSVALLIAHLATILH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 210
           AS RTPNLKAR NTFREEFRAVWRNYSE+
Sbjct: 181 ASLRTPNLKARFNTFREEFRAVWRNYSEI 209

[Close]

BLAST of CmoCh14G001080.1 vs. TAIR 10
Match: AT5G02040.2 (prenylated RAB acceptor 1.A1 )

HSP 1 Score: 325.9 bits (834), Expect = 2.4e-89
Identity = 164/209 (78.47%), Postives = 180/209 (86.12%), Query Frame = 0


Query: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI 60
           MDWGNVT +DL DALREVDWSSPPRP SEFF+RFT P+S  KW+SRLKCNLYYYRTNYFI
Sbjct: 1   MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPKWDSRLKCNLYYYRTNYFI 60

Query: 61  MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120
           MIV IL LG L RPLAI AA LTALS+AFLNDSFAG+FSEK TRTVR+FSP +AAKMRPP
Sbjct: 61  MIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQLAAKMRPP 120

Query: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH 180
           LTPV RGRPS+KRAI++CG+PRWVFVL  S VSF LW+IS GLL V  +L    LAT+LH
Sbjct: 121 LTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRVSVALLIAHLATILH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 210
           AS RTPNLKAR NTFREEFRAVWRNYSE+
Sbjct: 181 ASLRTPNLKARFNTFREEFRAVWRNYSEI 209

[Close]

BLAST of CmoCh14G001080.1 vs. TAIR 10
Match: AT5G05987.1 (prenylated RAB acceptor 1.A2 )

HSP 1 Score: 308.1 bits (788), Expect = 5.2e-84
Identity = 145/209 (69.38%), Postives = 175/209 (83.73%), Query Frame = 0


Query: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI 60
           MDW NV AED+I+ALREV+WS+PPR   EFF+RF FPRS +KW SRLKCNLYYYRTNYFI
Sbjct: 1   MDWDNVAAEDVIEALREVEWSTPPRSFGEFFSRFAFPRSFSKWKSRLKCNLYYYRTNYFI 60

Query: 61  MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120
           +++F+L L  + RPLA+V A+LTALSIAFLNDSFA +F+EK  RT+R FSPHMAAKMRPP
Sbjct: 61  LVIFVLGLALVTRPLALVGAALTALSIAFLNDSFAASFNEKFIRTIRHFSPHMAAKMRPP 120

Query: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH 180
             PVIRGR +A++ +Y+CG+PRWVFV+ F + S ++WF SCGLL VL++L   L   ++H
Sbjct: 121 HMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFSSCGLLWVLYALLTSLAVIIVH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 210
           AS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 181 ASIRTPNLKARLNTFREEFRAVWRNYSEL 209

[Close]

BLAST of CmoCh14G001080.1 vs. TAIR 10
Match: AT3G11397.1 (prenylated RAB acceptor 1.A3 )

HSP 1 Score: 301.6 bits (771), Expect = 4.9e-82
Identity = 147/209 (70.33%), Postives = 176/209 (84.21%), Query Frame = 0


Query: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI 60
           MDW +V AED+I+ALREV+WS+ PR ++EFF+RF FPRS +KW SRLKCNLYYYRTNYFI
Sbjct: 1   MDWDSVAAEDVIEALREVEWSASPRSLAEFFSRFAFPRSFSKWMSRLKCNLYYYRTNYFI 60

Query: 61  MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120
           + VF+L L  + RPLAI+ A+LTALS+AFLNDSFA TF+EK+ RT+R FSPH+AAKMRPP
Sbjct: 61  LFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHLAAKMRPP 120

Query: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH 180
             PVIRGR + ++ +YICG+PR VFVL+  + SF+LWF SCGLL VL++L   LL  LLH
Sbjct: 121 HMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLYALTTALLMILLH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 210
           AS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 181 ASLRTPNLKARLNTFREEFRAVWRNYSEL 209

[Close]

BLAST of CmoCh14G001080.1 vs. TAIR 10
Match: AT3G11402.2 (Cysteine/Histidine-rich C1 domain family protein )

HSP 1 Score: 301.6 bits (771), Expect = 4.9e-82
Identity = 147/209 (70.33%), Postives = 176/209 (84.21%), Query Frame = 0


Query: 1   MDWGNVTAEDLIDALREVDWSSPPRPISEFFARFTFPRSSAKWNSRLKCNLYYYRTNYFI 60
           MDW +V AED+I+ALREV+WS+ PR ++EFF+RF FPRS +KW SRLKCNLYYYRTNYFI
Sbjct: 702 MDWDSVAAEDVIEALREVEWSASPRSLAEFFSRFAFPRSFSKWMSRLKCNLYYYRTNYFI 761

Query: 61  MIVFILALGFLRRPLAIVAASLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHMAAKMRPP 120
           + VF+L L  + RPLAI+ A+LTALS+AFLNDSFA TF+EK+ RT+R FSPH+AAKMRPP
Sbjct: 762 LFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHLAAKMRPP 821

Query: 121 LTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFMLWFISCGLLTVLWSLAFGLLATLLH 180
             PVIRGR + ++ +YICG+PR VFVL+  + SF+LWF SCGLL VL++L   LL  LLH
Sbjct: 822 HMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLYALTTALLMILLH 881

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 210
           AS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 882 ASLRTPNLKARLNTFREEFRAVWRNYSEL 910

The following BLAST results are available for this feature:

BLAST of CmoCh14G001080.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZM7	3.4e-88	78.47	PRA1 family protein A1 OS=Arabidopsis thaliana OX=3702 GN=PRA1A1 PE=2 SV=1	[more]
Q8GWC3	7.4e-83	69.38	PRA1 family protein A2 OS=Arabidopsis thaliana OX=3702 GN=PRA1A2 PE=2 SV=1	[more]
Q8W115	6.9e-81	70.33	PRA1 family protein A3 OS=Arabidopsis thaliana OX=3702 GN=PRA1A3 PE=2 SV=1	[more]

BLAST of CmoCh14G001080.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7S7	3.5e-112	100.00	PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111482045 PE=3 SV=1	[more]
A0A6J1F5K4	3.5e-112	100.00	PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111442351 PE=3 SV=1	[more]
A0A5A7TML8	1.3e-109	97.13	PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G...	[more]
A0A1S3B6M0	1.3e-109	97.13	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103486359 PE=3 SV=1	[more]
A0A0A0LFH8	2.8e-109	97.13	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G733900 PE=3 SV=1	[more]

BLAST of CmoCh14G001080.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02040.1	2.4e-89	78.47	prenylated RAB acceptor 1.A1	[more]
AT5G02040.2	2.4e-89	78.47	prenylated RAB acceptor 1.A1	[more]
AT5G05987.1	5.2e-84	69.38	prenylated RAB acceptor 1.A2	[more]
AT3G11397.1	4.9e-82	70.33	prenylated RAB acceptor 1.A3	[more]
AT3G11402.2	4.9e-82	70.33	Cysteine/Histidine-rich C1 domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 20..192 e-value: 1.2E-43 score: 148.2
IPR004895	Prenylated rab acceptor PRA1	PANTHER	PTHR12859	PRA1 PROTEIN	coord: 1..209
None	No IPR available	PANTHER	PTHR12859:SF9	PRA1 FAMILY PROTEIN	coord: 1..209

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh14G001080	CmoCh14G001080	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G001080.1:exon:6115	CmoCh14G001080.1:exon:6115	exon
CmoCh14G001080.1:exon:6116	CmoCh14G001080.1:exon:6116	exon
CmoCh14G001080.1:exon:6117	CmoCh14G001080.1:exon:6117	exon
CmoCh14G001080.1:exon:6118	CmoCh14G001080.1:exon:6118	exon
CmoCh14G001080.1:exon:6119	CmoCh14G001080.1:exon:6119	exon
CmoCh14G001080.1:exon:6120	CmoCh14G001080.1:exon:6120	exon
CmoCh14G001080.1:exon:6121	CmoCh14G001080.1:exon:6121	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G001080.1:five_prime_utr	CmoCh14G001080.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G001080.1:cds	CmoCh14G001080.1:cds	CDS
CmoCh14G001080.1:cds	CmoCh14G001080.1:cds_2	CDS
CmoCh14G001080.1:cds	CmoCh14G001080.1:cds_3	CDS
CmoCh14G001080.1:cds	CmoCh14G001080.1:cds_4	CDS
CmoCh14G001080.1:cds	CmoCh14G001080.1:cds_5	CDS
CmoCh14G001080.1:cds	CmoCh14G001080.1:cds_6	CDS
CmoCh14G001080.1:cds	CmoCh14G001080.1:cds_7	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh14G001080.1	CmoCh14G001080.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane