CmoCh13G010040.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G010040.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein NRDE2 homolog isoform X1
Location	Cmo_Chr13: 8544060 .. 8544781 (-)
Sequence length	618
RNA-Seq Expression	CmoCh13G010040.1
Synteny	CmoCh13G010040.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTCCAGCAGAAGAGGAGTTGCCACCTGAAGAGCAAAAGCCTAAAACCTCCCTCTTCCCGCTCCCGTTCGTCGCTAACAATCCCCAGAGTCAGATAAGTCCGCCCAATTCAAGCGTTCCTCAGTGGCTTTGCAACTCCAGCTTCACCACTGACCTATCCGTCATCAACGATGCTCTTTCATCTCAAAACAATGTATATCCCTCCCTCTCCACCGATGGCGACCAGGAAGAGGCTGTGGAAGATGAAGGTGGTCCAAGTGTTAGACCTGAGGTACAGAAGTCATCTCGATCATACGAATTGCTGGAATCTTCTGCTTCGGACGACGACTCCGACCATGAGAAGAGGAAAAAGAGGAAGAAGAAGAAGAGGAGGAGGCGAAATGAATATGAAGAAAAAAAGGGATTCGGCGAGTATGGTTCGAGAAAGTCCGATGTTCGGGCTTGGGCCGATGCTGCCGATGGTAGACCTTCCAAGGATTATTACTTCGATTCTAATGGAGACCGGGATAACTTAGCATTCGGGTCTCTTTACAGGTATTTATGAGTGACTTAATTTAATCCTTTCAATCCAACTCTCTAGGTAGTTTCAGAGAAGATGTGGAAGATGAGTTTGAATGTAGTTGAATGCACTTATTCAGAAATTTGAAAAGACATGCCGATAATTTAATCAGACAGAGTAGAATTCACCTAAGATATACATGTTGTTCTAATGGCTAA

mRNA sequence

ATGGAAGCTCCAGCAGAAGAGGAGTTGCCACCTGAAGAGCAAAAGCCTAAAACCTCCCTCTTCCCGCTCCCGTTCGTCGCTAACAATCCCCAGAGTCAGATAAGTCCGCCCAATTCAAGCGTTCCTCAGTGGCTTTGCAACTCCAGCTTCACCACTGACCTATCCGTCATCAACGATGCTCTTTCATCTCAAAACAATGTATATCCCTCCCTCTCCACCGATGGCGACCAGGAAGAGGCTGTGGAAGATGAAGGTGGTCCAAGTGTTAGACCTGAGGTACAGAAGTCATCTCGATCATACGAATTGCTGGAATCTTCTGCTTCGGACGACGACTCCGACCATGAGAAGAGGAAAAAGAGGAAGAAGAAGAAGAGGAGGAGGCGAAATGAATATGAAGAAAAAAAGGGATTCGGCGAGTATGGTTCGAGAAAGTCCGATGTTCGGGCTTGGGCCGATGCTGCCGATGGTAGACCTTCCAAGGATTATTACTTCGATTCTAATGGAGACCGGGATAACTTAGCATTCGGGTCTCTTTACAGAAATTTGAAAAGACATGCCGATAATTTAATCAGACAGAGTAGAATTCACCTAAGATATACATGTTGTTCTAATGGCTAA

Coding sequence (CDS)

ATGGAAGCTCCAGCAGAAGAGGAGTTGCCACCTGAAGAGCAAAAGCCTAAAACCTCCCTCTTCCCGCTCCCGTTCGTCGCTAACAATCCCCAGAGTCAGATAAGTCCGCCCAATTCAAGCGTTCCTCAGTGGCTTTGCAACTCCAGCTTCACCACTGACCTATCCGTCATCAACGATGCTCTTTCATCTCAAAACAATGTATATCCCTCCCTCTCCACCGATGGCGACCAGGAAGAGGCTGTGGAAGATGAAGGTGGTCCAAGTGTTAGACCTGAGGTACAGAAGTCATCTCGATCATACGAATTGCTGGAATCTTCTGCTTCGGACGACGACTCCGACCATGAGAAGAGGAAAAAGAGGAAGAAGAAGAAGAGGAGGAGGCGAAATGAATATGAAGAAAAAAAGGGATTCGGCGAGTATGGTTCGAGAAAGTCCGATGTTCGGGCTTGGGCCGATGCTGCCGATGGTAGACCTTCCAAGGATTATTACTTCGATTCTAATGGAGACCGGGATAACTTAGCATTCGGGTCTCTTTACAGAAATTTGAAAAGACATGCCGATAATTTAATCAGACAGAGTAGAATTCACCTAAGATATACATGTTGTTCTAATGGCTAA

Protein sequence

MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYRNLKRHADNLIRQSRIHLRYTCCSNG

Homology

[Close]

BLAST of CmoCh13G010040.1 vs. ExPASy TrEMBL
Match: A0A6J1EAU9 (protein NRDE2 homolog isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111431485 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.7e-90
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60
           MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA
Sbjct: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60

Query: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120
           LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR
Sbjct: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120

Query: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180
           KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Sbjct: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180

[Close]

BLAST of CmoCh13G010040.1 vs. ExPASy TrEMBL
Match: A0A6J1ED94 (protein NRDE2 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431485 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.7e-90
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60
           MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA
Sbjct: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60

Query: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120
           LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR
Sbjct: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120

Query: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180
           KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Sbjct: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180

[Close]

BLAST of CmoCh13G010040.1 vs. ExPASy TrEMBL
Match: A0A6J1E7E0 (protein NRDE2 homolog isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111431485 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.7e-90
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60
           MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA
Sbjct: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60

Query: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120
           LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR
Sbjct: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120

Query: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180
           KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Sbjct: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180

[Close]

BLAST of CmoCh13G010040.1 vs. ExPASy TrEMBL
Match: A0A6J1E7Z6 (protein NRDE2 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431485 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.7e-90
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60
           MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA
Sbjct: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60

Query: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120
           LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR
Sbjct: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120

Query: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180
           KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Sbjct: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180

[Close]

BLAST of CmoCh13G010040.1 vs. ExPASy TrEMBL
Match: A0A6J1E7N7 (protein NRDE2 homolog isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111431485 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.7e-90
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60
           MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA
Sbjct: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60

Query: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120
           LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR
Sbjct: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120

Query: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180
           KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Sbjct: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180

[Close]

BLAST of CmoCh13G010040.1 vs. NCBI nr
Match: XP_022923902.1 (protein NRDE2 homolog isoform X3 [Cucurbita moschata])

HSP 1 Score: 342.0 bits (876), Expect = 3.5e-90
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60
           MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA
Sbjct: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60

Query: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120
           LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR
Sbjct: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120

Query: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180
           KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Sbjct: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180

[Close]

BLAST of CmoCh13G010040.1 vs. NCBI nr
Match: XP_022923903.1 (protein NRDE2 homolog isoform X4 [Cucurbita moschata])

HSP 1 Score: 342.0 bits (876), Expect = 3.5e-90
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60
           MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA
Sbjct: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60

Query: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120
           LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR
Sbjct: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120

Query: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180
           KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Sbjct: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180

[Close]

BLAST of CmoCh13G010040.1 vs. NCBI nr
Match: XP_022923901.1 (protein NRDE2 homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 342.0 bits (876), Expect = 3.5e-90
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60
           MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA
Sbjct: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60

Query: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120
           LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR
Sbjct: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120

Query: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180
           KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Sbjct: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180

[Close]

BLAST of CmoCh13G010040.1 vs. NCBI nr
Match: XP_022923900.1 (protein NRDE2 homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 342.0 bits (876), Expect = 3.5e-90
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60
           MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA
Sbjct: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60

Query: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120
           LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR
Sbjct: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120

Query: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180
           KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Sbjct: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180

[Close]

BLAST of CmoCh13G010040.1 vs. NCBI nr
Match: XP_022923904.1 (protein NRDE2 homolog isoform X5 [Cucurbita moschata])

HSP 1 Score: 342.0 bits (876), Expect = 3.5e-90
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60
           MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA
Sbjct: 1   MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDA 60

Query: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120
           LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR
Sbjct: 61  LSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDDDSDHEKRKKR 120

Query: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180
           KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Sbjct: 121 KKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR 180

[Close]

BLAST of CmoCh13G010040.1 vs. TAIR 10
Match: AT3G17740.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast hits to 335 proteins in 133 species: Archae - 1; Bacteria - 0; Metazoa - 140; Fungi - 188; Plants - 42; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-13
Identity = 69/168 (41.07%), Postives = 94/168 (55.95%), Query Frame = 0


Query: 20  LFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEE 79
           LFP+   + N  S I    S+ PQWL N+SFTTDLSVIN A S+     PS S++ +  +
Sbjct: 18  LFPVFPTSANSISAI----SNAPQWLRNASFTTDLSVINAAASTA----PS-SSEVEAGD 77

Query: 80  AVEDEGGPSVRPEVQKSSRSYELLESSAS-DDDSDHEKRKKRKKKKRRRRNEYEEKKGFG 139
             ++EGG      +   +R Y L+E   S + D D  KRK+ KKKKR+  N  +E +   
Sbjct: 78  DEDEEGGADGNIGLANQARVYNLVEEEGSLESDDDKVKRKREKKKKRKSDNASDESR--- 137

Query: 140 EYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR-NLKRH 186
              SRKS      D    +P KDYY D+  D DNLA+GS+YR N+ R+
Sbjct: 138 ---SRKS------DEYYSKPVKDYYLDTRPDPDNLAYGSIYRMNVPRY 164

[Close]

BLAST of CmoCh13G010040.1 vs. TAIR 10
Match: AT3G17712.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17740.1); Has 265 Blast hits to 264 proteins in 123 species: Archae - 1; Bacteria - 0; Metazoa - 116; Fungi - 89; Plants - 33; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-13
Identity = 69/168 (41.07%), Postives = 94/168 (55.95%), Query Frame = 0


Query: 20  LFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEE 79
           LFP+   + N  S I    S+ PQWL N+SFTTDLSVIN A S+     PS S++ +  +
Sbjct: 18  LFPVFPTSANSISAI----SNAPQWLRNASFTTDLSVINAAASTA----PS-SSEVEAGD 77

Query: 80  AVEDEGGPSVRPEVQKSSRSYELLESSAS-DDDSDHEKRKKRKKKKRRRRNEYEEKKGFG 139
             ++EGG      +   +R Y L+E   S + D D  KRK+ KKKKR+  N  +E +   
Sbjct: 78  DEDEEGGADGNIGLANQARVYNLVEEEGSLESDDDKVKRKREKKKKRKSDNASDESR--- 137

Query: 140 EYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR-NLKRH 186
              SRKS      D    +P KDYY D+  D DNLA+GS+YR N+ R+
Sbjct: 138 ---SRKS------DEYYSKPVKDYYLDTRPDPDNLAYGSIYRMNVPRY 164

[Close]

BLAST of CmoCh13G010040.1 vs. TAIR 10
Match: AT3G17712.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17740.1). )

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-13
Identity = 69/168 (41.07%), Postives = 94/168 (55.95%), Query Frame = 0


Query: 20  LFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEE 79
           LFP+   + N  S I    S+ PQWL N+SFTTDLSVIN A S+     PS S++ +  +
Sbjct: 18  LFPVFPTSANSISAI----SNAPQWLRNASFTTDLSVINAAASTA----PS-SSEVEAGD 77

Query: 80  AVEDEGGPSVRPEVQKSSRSYELLESSAS-DDDSDHEKRKKRKKKKRRRRNEYEEKKGFG 139
             ++EGG      +   +R Y L+E   S + D D  KRK+ KKKKR+  N  +E +   
Sbjct: 78  DEDEEGGADGNIGLANQARVYNLVEEEGSLESDDDKVKRKREKKKKRKSDNASDESR--- 137

Query: 140 EYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR-NLKRH 186
              SRKS      D    +P KDYY D+  D DNLA+GS+YR N+ R+
Sbjct: 138 ---SRKS------DEYYSKPVKDYYLDTRPDPDNLAYGSIYRMNVPRY 164

[Close]

BLAST of CmoCh13G010040.1 vs. TAIR 10
Match: AT3G17712.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17740.1). )

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-13
Identity = 69/168 (41.07%), Postives = 94/168 (55.95%), Query Frame = 0


Query: 20  LFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEE 79
           LFP+   + N  S I    S+ PQWL N+SFTTDLSVIN A S+     PS S++ +  +
Sbjct: 49  LFPVFPTSANSISAI----SNAPQWLRNASFTTDLSVINAAASTA----PS-SSEVEAGD 108

Query: 80  AVEDEGGPSVRPEVQKSSRSYELLESSAS-DDDSDHEKRKKRKKKKRRRRNEYEEKKGFG 139
             ++EGG      +   +R Y L+E   S + D D  KRK+ KKKKR+  N  +E +   
Sbjct: 109 DEDEEGGADGNIGLANQARVYNLVEEEGSLESDDDKVKRKREKKKKRKSDNASDESR--- 168

Query: 140 EYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR-NLKRH 186
              SRKS      D    +P KDYY D+  D DNLA+GS+YR N+ R+
Sbjct: 169 ---SRKS------DEYYSKPVKDYYLDTRPDPDNLAYGSIYRMNVPRY 195

The following BLAST results are available for this feature:

BLAST of CmoCh13G010040.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G010040.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EAU9	1.7e-90	100.00	protein NRDE2 homolog isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111431485 P...	[more]
A0A6J1ED94	1.7e-90	100.00	protein NRDE2 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431485 P...	[more]
A0A6J1E7E0	1.7e-90	100.00	protein NRDE2 homolog isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111431485 P...	[more]
A0A6J1E7Z6	1.7e-90	100.00	protein NRDE2 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431485 P...	[more]
A0A6J1E7N7	1.7e-90	100.00	protein NRDE2 homolog isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111431485 P...	[more]

BLAST of CmoCh13G010040.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923902.1	3.5e-90	100.00	protein NRDE2 homolog isoform X3 [Cucurbita moschata]	[more]
XP_022923903.1	3.5e-90	100.00	protein NRDE2 homolog isoform X4 [Cucurbita moschata]	[more]
XP_022923901.1	3.5e-90	100.00	protein NRDE2 homolog isoform X2 [Cucurbita moschata]	[more]
XP_022923900.1	3.5e-90	100.00	protein NRDE2 homolog isoform X1 [Cucurbita moschata]	[more]
XP_022923904.1	3.5e-90	100.00	protein NRDE2 homolog isoform X5 [Cucurbita moschata]	[more]

BLAST of CmoCh13G010040.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17740.1	1.3e-13	41.07	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G17712.1	1.3e-13	41.07	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G17712.3	1.3e-13	41.07	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G17712.2	1.3e-13	41.07	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 114..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..44
IPR013633	siRNA-mediated silencing protein NRDE-2	PANTHER	PTHR13471	TETRATRICOPEPTIDE-LIKE HELICAL	coord: 26..181

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh13G010040	CmoCh13G010040	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G010040.1:exon:8967	CmoCh13G010040.1:exon:8967	exon
CmoCh13G010040.1:exon:8968	CmoCh13G010040.1:exon:8968	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G010040.1:cds	CmoCh13G010040.1:cds_2	CDS
CmoCh13G010040.1:cds	CmoCh13G010040.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh13G010040.1	CmoCh13G010040.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus