CmoCh13G004950.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G004950.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like
Location	Cmo_Chr13: 5917136 .. 5917678 (-)
Sequence length	543
RNA-Seq Expression	CmoCh13G004950.1
Synteny	CmoCh13G004950.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCCGCCGTAGCAGCCGCCGCCGCCGCCGCTGCCCTAGCCCGACGGAGCTCCTCCTCTTCCTCCTCGTCCACTACCTCCAACCGATCCTCCTCCGGCTCTTTCTACAGTCAATACTACCCGTCGCCCTCTGTATCGGTCCGACAGCCGCCATTGGCCAGCCGGTATGAGTGCCGGAAACGGCTAGACTGGAGTAAATTCCGGCAGTATCTGAGAAGTCGGTGCCCGACATTGAGCCTCTCCACCTGCACCGGAGCGGATATTGTCGAGTTCCTCTGCTATTTAGACGAATTCGGCGACACCAAAGTACACGCCGACACCTGCCCTAATTTCGGCCACCGCTACCCGGTCGATCCCTACTGCGATTGCCCCACCCAACAACCGTGGAACAGCGTCGCCGGTCTCATCAGCCGCCTCCGCGTCGCCTTCGAGGAAAACGGCGGCAACCCAGTCACCAACCCCTTTAATGCCGTCGACGTCAAAATTTACCTCGACGACATTAAGGACTCCCAAAACAGATCCCGAGGAATTGATCGGTAA

mRNA sequence

ATGTCAGCCGCCGTAGCAGCCGCCGCCGCCGCCGCTGCCCTAGCCCGACGGAGCTCCTCCTCTTCCTCCTCGTCCACTACCTCCAACCGATCCTCCTCCGGCTCTTTCTACAGTCAATACTACCCGTCGCCCTCTGTATCGGTCCGACAGCCGCCATTGGCCAGCCGGTATGAGTGCCGGAAACGGCTAGACTGGAGTAAATTCCGGCAGTATCTGAGAAGTCGGTGCCCGACATTGAGCCTCTCCACCTGCACCGGAGCGGATATTGTCGAGTTCCTCTGCTATTTAGACGAATTCGGCGACACCAAAGTACACGCCGACACCTGCCCTAATTTCGGCCACCGCTACCCGGTCGATCCCTACTGCGATTGCCCCACCCAACAACCGTGGAACAGCGTCGCCGGTCTCATCAGCCGCCTCCGCGTCGCCTTCGAGGAAAACGGCGGCAACCCAGTCACCAACCCCTTTAATGCCGTCGACGTCAAAATTTACCTCGACGACATTAAGGACTCCCAAAACAGATCCCGAGGAATTGATCGGTAA

Coding sequence (CDS)

ATGTCAGCCGCCGTAGCAGCCGCCGCCGCCGCCGCTGCCCTAGCCCGACGGAGCTCCTCCTCTTCCTCCTCGTCCACTACCTCCAACCGATCCTCCTCCGGCTCTTTCTACAGTCAATACTACCCGTCGCCCTCTGTATCGGTCCGACAGCCGCCATTGGCCAGCCGGTATGAGTGCCGGAAACGGCTAGACTGGAGTAAATTCCGGCAGTATCTGAGAAGTCGGTGCCCGACATTGAGCCTCTCCACCTGCACCGGAGCGGATATTGTCGAGTTCCTCTGCTATTTAGACGAATTCGGCGACACCAAAGTACACGCCGACACCTGCCCTAATTTCGGCCACCGCTACCCGGTCGATCCCTACTGCGATTGCCCCACCCAACAACCGTGGAACAGCGTCGCCGGTCTCATCAGCCGCCTCCGCGTCGCCTTCGAGGAAAACGGCGGCAACCCAGTCACCAACCCCTTTAATGCCGTCGACGTCAAAATTTACCTCGACGACATTAAGGACTCCCAAAACAGATCCCGAGGAATTGATCGGTAA

Protein sequence

MSAAVAAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR

Homology

[Close]

BLAST of CmoCh13G004950.1 vs. ExPASy Swiss-Prot
Match: Q9LMK2 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.8e-38
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 0


Query: 42  PSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGD 101
           P PS     P   SRYE +KR DW+ F QYL++  P L+LS C+GA ++EFL YLD+FG 
Sbjct: 17  PGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGK 76

Query: 102 TKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDV 161
           TKVH   CP FGH+ P  P C CP +Q W S+  LI RLR A+EENGG P +NPF A  V
Sbjct: 77  TKVHVAACPYFGHQQPPSP-CSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 136

Query: 162 KIYLDDIKDSQNRSRGI 179
           +IYL ++++SQ ++RGI
Sbjct: 137 RIYLREVRESQAKARGI 152

[Close]

BLAST of CmoCh13G004950.1 vs. ExPASy Swiss-Prot
Match: B8AIK3 (Protein G1-like1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05993 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-36
Identity = 71/124 (57.26%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 55  SRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGH 114
           SRYE +KR DW  F QYLR+  P L LS C+GA ++EFL YLD+FG TKVHA  CP FGH
Sbjct: 22  SRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGCPFFGH 81

Query: 115 RYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNR 174
             P  P C CP +Q W S+  L+ RLR AFEE+GG P +NPF A  V++YL DI+D+Q++
Sbjct: 82  PSPPAP-CPCPLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRDTQSK 141

Query: 175 SRGI 179
           +RGI
Sbjct: 142 ARGI 144

[Close]

BLAST of CmoCh13G004950.1 vs. ExPASy Swiss-Prot
Match: Q0E3M2 (Protein G1-like1 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L1 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-36
Identity = 71/124 (57.26%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 55  SRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGH 114
           SRYE +KR DW  F QYLR+  P L LS C+GA ++EFL YLD+FG TKVHA  CP FGH
Sbjct: 22  SRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGCPFFGH 81

Query: 115 RYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNR 174
             P  P C CP +Q W S+  L+ RLR AFEE+GG P +NPF A  V++YL DI+D+Q++
Sbjct: 82  PSPPAP-CPCPLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRDTQSK 141

Query: 175 SRGI 179
           +RGI
Sbjct: 142 ARGI 144

[Close]

BLAST of CmoCh13G004950.1 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.6e-36
Identity = 71/129 (55.04%), Postives = 89/129 (68.99%), Query Frame = 0


Query: 50  QPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTC 109
           + P  SRYE +KR DW  F QYLR+  P L LS C+GA ++EFL YLD+FG TKVHA  C
Sbjct: 16  EAPRPSRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGC 75

Query: 110 PNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIK 169
           P FGH  P  P C CP +Q W S+  L+ RLR AFEE+GG P  NPF A  V++YL +++
Sbjct: 76  PFFGHPSPPAP-CPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVR 135

Query: 170 DSQNRSRGI 179
           DSQ ++RGI
Sbjct: 136 DSQAKARGI 143

[Close]

BLAST of CmoCh13G004950.1 vs. ExPASy Swiss-Prot
Match: Q652I1 (Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.6e-36
Identity = 71/129 (55.04%), Postives = 89/129 (68.99%), Query Frame = 0


Query: 50  QPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTC 109
           + P  SRYE +KR DW  F QYLR+  P L LS C+GA ++EFL YLD+FG TKVHA  C
Sbjct: 16  EAPRPSRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGC 75

Query: 110 PNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIK 169
           P FGH  P  P C CP +Q W S+  L+ RLR AFEE+GG P  NPF A  V++YL +++
Sbjct: 76  PFFGHPSPPAP-CPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVR 135

Query: 170 DSQNRSRGI 179
           DSQ ++RGI
Sbjct: 136 DSQAKARGI 143

[Close]

BLAST of CmoCh13G004950.1 vs. ExPASy TrEMBL
Match: A0A6J1EH11 (protein G1-like6 OS=Cucurbita moschata OX=3662 GN=LOC111434020 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR 60
           MSAAVAAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR
Sbjct: 1   MSAAVAAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR 60

Query: 61  KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP 120
           KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP
Sbjct: 61  KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP 120

Query: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 180
           YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR
Sbjct: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 180

[Close]

BLAST of CmoCh13G004950.1 vs. ExPASy TrEMBL
Match: A0A6J1KGB9 (protein G1-like6 OS=Cucurbita maxima OX=3661 GN=LOC111495526 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.6e-92
Identity = 178/181 (98.34%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARR-SSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60
           MSAAVAAAAAAAALARR SSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC
Sbjct: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60

Query: 61  RKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120
           RKRLDWSKFRQYLRSRCPTLSL+TCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD
Sbjct: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120

Query: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGID 180
           PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLD IKDSQNRSRGID
Sbjct: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID 180

[Close]

BLAST of CmoCh13G004950.1 vs. ExPASy TrEMBL
Match: A0A5D3E452 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold74574G00010 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.4e-69
Identity = 137/180 (76.11%), Postives = 151/180 (83.89%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR 60
           MSAAV AAAAAAAL RR+SS      TS  SSS SFYS YYPS SVSVR PPL SRYEC 
Sbjct: 1   MSAAV-AAAAAAALGRRTSS------TSTPSSSDSFYSHYYPSASVSVRPPPLLSRYECL 60

Query: 61  KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP 120
           KR DW++FRQYLRSRCPTLSL+ C+GA++VEFLCYLDE G +K+H  TCPNFG RYPVDP
Sbjct: 61  KRRDWNRFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYPVDP 120

Query: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 180
           YCDCPTQQPW ++  LI RLRVAFEENGGNPVTNPFN VDVK+YL+D+KDSQ RSRGIDR
Sbjct: 121 YCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 173

[Close]

BLAST of CmoCh13G004950.1 vs. ExPASy TrEMBL
Match: A0A1S3C9J9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC103498324 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.4e-69
Identity = 137/180 (76.11%), Postives = 151/180 (83.89%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR 60
           MSAAV AAAAAAAL RR+SS      TS  SSS SFYS YYPS SVSVR PPL SRYEC 
Sbjct: 1   MSAAV-AAAAAAALGRRTSS------TSTPSSSDSFYSHYYPSASVSVRPPPLLSRYECL 60

Query: 61  KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP 120
           KR DW++FRQYLRSRCPTLSL+ C+GA++VEFLCYLDE G +K+H  TCPNFG RYPVDP
Sbjct: 61  KRRDWNRFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYPVDP 120

Query: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 180
           YCDCPTQQPW ++  LI RLRVAFEENGGNPVTNPFN VDVK+YL+D+KDSQ RSRGIDR
Sbjct: 121 YCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 173

[Close]

BLAST of CmoCh13G004950.1 vs. ExPASy TrEMBL
Match: A0A0A0LY69 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G553520 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 6.6e-67
Identity = 134/180 (74.44%), Postives = 152/180 (84.44%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR 60
           MSAAV AAAAAAAL+RR+SSSSSSSTT  RSSS SFYS YYPS SVSVR  PL SRY+C 
Sbjct: 1   MSAAV-AAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCL 60

Query: 61  KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP 120
           KR DW++FRQYLRSR PTLSL+ C+G+++VEFL YLD  G +K+H  TCP+FGHRYPVDP
Sbjct: 61  KRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDP 120

Query: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 180
           YCDCPTQQPW ++  LI RLRVAFEENGGNPVTNPFN V VK+YL+ +KDSQ  SRGIDR
Sbjct: 121 YCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGIDR 179

[Close]

BLAST of CmoCh13G004950.1 vs. NCBI nr
Match: XP_022927089.1 (protein G1-like6 [Cucurbita moschata])

HSP 1 Score: 355.5 bits (911), Expect = 2.6e-94
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR 60
           MSAAVAAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR
Sbjct: 1   MSAAVAAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR 60

Query: 61  KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP 120
           KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP
Sbjct: 61  KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP 120

Query: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 180
           YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR
Sbjct: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 180

[Close]

BLAST of CmoCh13G004950.1 vs. NCBI nr
Match: KAG7019447.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 350.1 bits (897), Expect = 1.1e-92
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR 60
           MSAAV AAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR
Sbjct: 1   MSAAV-AAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR 60

Query: 61  KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP 120
           KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP
Sbjct: 61  KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP 120

Query: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 180
           YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR
Sbjct: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 179

[Close]

BLAST of CmoCh13G004950.1 vs. NCBI nr
Match: KAG6583821.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 350.1 bits (897), Expect = 1.1e-92
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR 60
           MSAAV AAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR
Sbjct: 1   MSAAV-AAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR 60

Query: 61  KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP 120
           KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP
Sbjct: 61  KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP 120

Query: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 180
           YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR
Sbjct: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 179

[Close]

BLAST of CmoCh13G004950.1 vs. NCBI nr
Match: XP_023519738.1 (protein G1-like6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 349.4 bits (895), Expect = 1.9e-92
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARR-SSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60
           MSAAVAAAAAAAALARR SSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC
Sbjct: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60

Query: 61  RKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120
           RKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVH DTCPNFGHRYPVD
Sbjct: 61  RKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHTDTCPNFGHRYPVD 120

Query: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGID 180
           PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGID
Sbjct: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGID 180

[Close]

BLAST of CmoCh13G004950.1 vs. NCBI nr
Match: XP_023001367.1 (protein G1-like6 [Cucurbita maxima])

HSP 1 Score: 347.1 bits (889), Expect = 9.4e-92
Identity = 178/181 (98.34%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARR-SSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60
           MSAAVAAAAAAAALARR SSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC
Sbjct: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60

Query: 61  RKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120
           RKRLDWSKFRQYLRSRCPTLSL+TCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD
Sbjct: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120

Query: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGID 180
           PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLD IKDSQNRSRGID
Sbjct: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID 180

[Close]

BLAST of CmoCh13G004950.1 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 159.1 bits (401), Expect = 3.4e-39
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 0


Query: 42  PSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGD 101
           P PS     P   SRYE +KR DW+ F QYL++  P L+LS C+GA ++EFL YLD+FG 
Sbjct: 17  PGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGK 76

Query: 102 TKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDV 161
           TKVH   CP FGH+ P  P C CP +Q W S+  LI RLR A+EENGG P +NPF A  V
Sbjct: 77  TKVHVAACPYFGHQQPPSP-CSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 136

Query: 162 KIYLDDIKDSQNRSRGI 179
           +IYL ++++SQ ++RGI
Sbjct: 137 RIYLREVRESQAKARGI 152

[Close]

BLAST of CmoCh13G004950.1 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 151.0 bits (380), Expect = 9.2e-37
Identity = 88/169 (52.07%), Postives = 107/169 (63.31%), Query Frame = 0


Query: 10  AAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECRKRLDWSKFR 69
           AAAA    +SSSSSS      SS GS  +Q               SRYE +KR DW+ F 
Sbjct: 22  AAAATTTTTSSSSSS------SSGGSGTNQ--------------LSRYENQKRRDWNTFG 81

Query: 70  QYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDPYCDCPTQQP 129
           QYLR+  P LSLS C+GA ++EFL YLD+FG TKVH   CP FGH  P  P C CP +Q 
Sbjct: 82  QYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAP-CACPLRQA 141

Query: 130 WNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGI 179
           W S+  LI RLR AFEENGG+P TNPF A  V++YL +++DSQ ++RGI
Sbjct: 142 WGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGI 169

[Close]

BLAST of CmoCh13G004950.1 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 146.0 bits (367), Expect = 3.0e-35
Identity = 77/159 (48.43%), Postives = 102/159 (64.15%), Query Frame = 0


Query: 20  SSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTL 79
           S++SSS T       +       SPS +      +SRYE +KR DW+ F QYLR+  P L
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPSAN------SSRYENQKRRDWNTFGQYLRNHRPPL 83

Query: 80  SLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISR 139
           SLS C+GA ++EFL YLD+FG TKVH + C  +GH  P  P C CP +Q W S+  LI R
Sbjct: 84  SLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAP-CPCPLRQAWGSLDALIGR 143

Query: 140 LRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGI 179
           LR AFEENGG P TNPF A  V++YL +++D Q+++RG+
Sbjct: 144 LRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGV 175

[Close]

BLAST of CmoCh13G004950.1 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-34
Identity = 75/155 (48.39%), Postives = 103/155 (66.45%), Query Frame = 0


Query: 24  SSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLST 83
           S   +NR+ + S  +Q   +PS S   PP +SRYE +KR DW+ F QYLR+  P LSL++
Sbjct: 5   SQNHNNRNPNTSLSTQ---TPS-SFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLAS 64

Query: 84  CTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVA 143
           C+GA +++FL YLD+FG TKVH   C  FG   P  P C CP +Q W S+  LI RLR A
Sbjct: 65  CSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAP-CPCPLRQAWGSLDALIGRLRAA 124

Query: 144 FEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGI 179
           +EENGG P T+PF +  V+I+L +++D Q +SRG+
Sbjct: 125 YEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGV 154

[Close]

BLAST of CmoCh13G004950.1 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-34
Identity = 66/128 (51.56%), Postives = 88/128 (68.75%), Query Frame = 0


Query: 51  PPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCP 110
           PP +SRYE +KR DW+ F QYLR+  P LSL +C+GA ++EFL YLD+FG TKVH   C 
Sbjct: 20  PPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCA 79

Query: 111 NFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKD 170
            FG   P  P C CP +Q W S+  LI RLR A+EENGG P  NPF +  V+++L +++D
Sbjct: 80  FFGLPNPPAP-CPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRD 139

Query: 171 SQNRSRGI 179
            Q ++RG+
Sbjct: 140 FQAKARGV 146

The following BLAST results are available for this feature:

BLAST of CmoCh13G004950.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMK2	4.8e-38	53.28	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
B8AIK3	1.2e-36	57.26	Protein G1-like1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05993 PE=3 SV=1	[more]
Q0E3M2	1.2e-36	57.26	Protein G1-like1 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L1 PE=1 SV=1	[more]
A2YG32	2.6e-36	55.04	Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1	[more]
Q652I1	2.6e-36	55.04	Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1	[more]

BLAST of CmoCh13G004950.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EH11	1.3e-94	100.00	protein G1-like6 OS=Cucurbita moschata OX=3662 GN=LOC111434020 PE=3 SV=1	[more]
A0A6J1KGB9	4.6e-92	98.34	protein G1-like6 OS=Cucurbita maxima OX=3661 GN=LOC111495526 PE=3 SV=1	[more]
A0A5D3E452	1.4e-69	76.11	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3C9J9	1.4e-69	76.11	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LY69	6.6e-67	74.44	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G553520 PE=3 S...	[more]

BLAST of CmoCh13G004950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927089.1	2.6e-94	100.00	protein G1-like6 [Cucurbita moschata]	[more]
KAG7019447.1	1.1e-92	99.44	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
KAG6583821.1	1.1e-92	99.44	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
XP_023519738.1	1.9e-92	98.90	protein G1-like6 [Cucurbita pepo subsp. pepo]	[more]
XP_023001367.1	9.4e-92	98.34	protein G1-like6 [Cucurbita maxima]	[more]

BLAST of CmoCh13G004950.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07090.1	3.4e-39	53.28	Protein of unknown function (DUF640)	[more]
AT3G23290.2	9.2e-37	52.07	Protein of unknown function (DUF640)	[more]
AT2G31160.1	3.0e-35	48.43	Protein of unknown function (DUF640)	[more]
AT3G04510.1	1.9e-34	48.39	Protein of unknown function (DUF640)	[more]
AT5G28490.1	1.9e-34	51.56	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 47..170 e-value: 2.3E-41 score: 140.9
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 56..180 score: 38.128204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..35
None	No IPR available	PANTHER	PTHR31165:SF41	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4	coord: 17..179
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 17..179

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh13G004950	CmoCh13G004950	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G004950.1:exon:8689	CmoCh13G004950.1:exon:8689	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G004950.1:cds	CmoCh13G004950.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh13G004950.1	CmoCh13G004950.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus