CmoCh12G011860.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G011860.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionInterleukin-2 receptor subunit beta like
LocationCmo_Chr12: 10712079 .. 10712564 (+)
Sequence length486
RNA-Seq ExpressionCmoCh12G011860.1
SyntenyCmoCh12G011860.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGATTCGAACGAGCATAAAGAAAATGCATCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCAAAATCAGCGCCGTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA

mRNA sequence

ATGGACGATTCGAACGAGCATAAAGAAAATGCATCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCAAAATCAGCGCCGTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA

Coding sequence (CDS)

ATGGACGATTCGAACGAGCATAAAGAAAATGCATCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCAAAATCAGCGCCGTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA

Protein sequence

MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
Homology
BLAST of CmoCh12G011860.1 vs. ExPASy TrEMBL
Match: A0A6J1FDP2 (uncharacterized protein LOC111444439 OS=Cucurbita moschata OX=3662 GN=LOC111444439 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.8e-84
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0

Query: 1   MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSP 60
           MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSP
Sbjct: 1   MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSP 60

Query: 61  LTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYALNFDEGY 120
           LTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYALNFDEGY
Sbjct: 61  LTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYALNFDEGY 120

Query: 121 DEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS 162
           DEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
Sbjct: 121 DEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS 161

BLAST of CmoCh12G011860.1 vs. ExPASy TrEMBL
Match: A0A6J1HQB7 (uncharacterized protein LOC111465710 OS=Cucurbita maxima OX=3661 GN=LOC111465710 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 2.9e-82
Identity = 157/161 (97.52%), Postives = 159/161 (98.76%), Query Frame = 0

Query: 1   MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSP 60
           MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVP+P
Sbjct: 1   MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPTP 60

Query: 61  LTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYALNFDEGY 120
           LTRCSSAKDKSRSRESPESKTDWRPHFISRLG HSRRHSSASVDFHYDALSYALNFDEGY
Sbjct: 61  LTRCSSAKDKSRSRESPESKTDWRPHFISRLGLHSRRHSSASVDFHYDALSYALNFDEGY 120

Query: 121 DEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS 162
           DEGHVDDAFPLRNFSSRLPASPPKS PSS+ETSREMTTAYS
Sbjct: 121 DEGHVDDAFPLRNFSSRLPASPPKSEPSSSETSREMTTAYS 161

BLAST of CmoCh12G011860.1 vs. ExPASy TrEMBL
Match: A0A5D3BFQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00930 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58
Identity = 127/167 (76.05%), Postives = 136/167 (81.44%), Query Frame = 0

Query: 1   MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQ------HQRRMSFSSD 60
           MDDSNEHK N+S S+LK  +KSSLCLSCCLR+HRNGHHHL  H       H RRMS SSD
Sbjct: 1   MDDSNEHKGNSSSSTLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHHGHHRRMSISSD 60

Query: 61  GDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYAL 120
           GD P PLTRCSSAKDKSRSRE  + K D  P+FISRLGRH RRH SAS DF YDALSY+L
Sbjct: 61  GDSPGPLTRCSSAKDKSRSRECHDIK-DRLPNFISRLGRHGRRH-SASADFRYDALSYSL 120

Query: 121 NFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS 162
           NFDEGYDEGHVDD FPLRNFSSRLPASPPKSAPSS+  SREM TA+S
Sbjct: 121 NFDEGYDEGHVDDEFPLRNFSSRLPASPPKSAPSSSTASREMITAFS 165

BLAST of CmoCh12G011860.1 vs. ExPASy TrEMBL
Match: A0A1S3CDF1 (uncharacterized protein LOC103499607 OS=Cucumis melo OX=3656 GN=LOC103499607 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 3.0e-58
Identity = 126/167 (75.45%), Postives = 136/167 (81.44%), Query Frame = 0

Query: 1   MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQ------HQRRMSFSSD 60
           MDDSNEHK N+S S+LK  +KSSLCLSCCLR+HRNGHHHL  H       H RRMS SSD
Sbjct: 1   MDDSNEHKGNSSSSTLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHHGHHRRMSISSD 60

Query: 61  GDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYAL 120
           GD P PLTRCSSAKDKSRSRE  + K D  P+FISRLGRH RRH SAS DF YDALSY+L
Sbjct: 61  GDSPGPLTRCSSAKDKSRSRECHDIK-DRLPNFISRLGRHGRRH-SASADFRYDALSYSL 120

Query: 121 NFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS 162
           NFDEGYDEGHVDD FPLRNFSSRLPASPPKS+PSS+  SREM TA+S
Sbjct: 121 NFDEGYDEGHVDDEFPLRNFSSRLPASPPKSSPSSSTASREMITAFS 165

BLAST of CmoCh12G011860.1 vs. ExPASy TrEMBL
Match: A0A0A0LL60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009350 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.9e-57
Identity = 126/165 (76.36%), Postives = 136/165 (82.42%), Query Frame = 0

Query: 1   MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHL---QRHQHQRRMSFSSDGD- 60
           MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNGHHHL     H H+R MS SSDG+ 
Sbjct: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60

Query: 61  VPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYALNF 120
            P PL RCSSAKDKSRSRE  + K D  P FISRLGRH RRH SAS DFHYDALSY+LNF
Sbjct: 61  SPGPLMRCSSAKDKSRSRECHDIK-DRLPSFISRLGRHGRRH-SASADFHYDALSYSLNF 120

Query: 121 DEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS 162
           DEGYDEGHVDD FPLRNFSSRLPASPPKS+PS+T  SREM TA+S
Sbjct: 121 DEGYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS 163

BLAST of CmoCh12G011860.1 vs. TAIR 10
Match: AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-12
Identity = 54/151 (35.76%), Postives = 77/151 (50.99%), Query Frame = 0

Query: 9   ENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAK 68
           E  +  SL+ K+KS  C++ C R   N HHH            +++    SP       K
Sbjct: 4   ETMTNLSLQKKLKSRFCIAGCFRT-TNHHHHDNIPDDLPSSPVTTEKSTQSPHGGGMKTK 63

Query: 69  DKSRSRESPESKTDWRPHFISRL----------GRHSRRHSSASVDFHYDALSYALNFDE 128
               +R   +S    +   I R+          G+H RRH++   DFHYD  SYALNFD+
Sbjct: 64  SPRLTRTLSKSHEKCK-SLIHRMGGGVGGVGGHGKHIRRHTA---DFHYDPSSYALNFDK 123

Query: 129 GYDEGHVDDAFPLRNFSSRLPASPPKSAPSS 150
           G ++ ++ D FPLRNFS+RLP SPP SA ++
Sbjct: 124 GDEDDNI-DRFPLRNFSARLPHSPPSSAKAA 148

BLAST of CmoCh12G011860.1 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 2.6e-06
Identity = 28/55 (50.91%), Postives = 33/55 (60.00%), Query Frame = 0

Query: 99  SSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETS 154
           SS    F YD LSY+LNFD+G   GH DD FP R++S R  A    S P ST+ S
Sbjct: 119 SSDQGKFRYDQLSYSLNFDDGNQTGHFDDEFPYRDYSMRFAA---PSLPVSTKCS 170

BLAST of CmoCh12G011860.1 vs. TAIR 10
Match: AT5G14890.1 (NHL domain-containing protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-05
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 0

Query: 103 VDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETS 154
           V F YD+ SY+LNFD+G   GH +D FP R++S R  A    S P ST+ S
Sbjct: 693 VSFRYDSWSYSLNFDDGKQTGHFEDEFPYRDYSMRFAA---PSLPVSTKCS 740

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FDP21.8e-84100.00uncharacterized protein LOC111444439 OS=Cucurbita moschata OX=3662 GN=LOC1114444... [more]
A0A6J1HQB72.9e-8297.52uncharacterized protein LOC111465710 OS=Cucurbita maxima OX=3661 GN=LOC111465710... [more]
A0A5D3BFQ41.3e-5876.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CDF13.0e-5875.45uncharacterized protein LOC103499607 OS=Cucumis melo OX=3656 GN=LOC103499607 PE=... [more]
A0A0A0LL601.9e-5776.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009350 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G35090.15.4e-1235.76unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
AT3G01430.12.6e-0650.91BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:... [more]
AT5G14890.11.3e-0549.02NHL domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..89
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 10..147
NoneNo IPR availablePANTHERPTHR33168:SF60SUBFAMILY NOT NAMEDcoord: 10..147

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh12G011860CmoCh12G011860gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh12G011860.1:exon:1620CmoCh12G011860.1:exon:1620exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh12G011860.1:cdsCmoCh12G011860.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh12G011860.1CmoCh12G011860.1-proteinpolypeptide