CmoCh12G011860.1 (mRNA) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGATTCGAACGAGCATAAAGAAAATGCATCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCAAAATCAGCGCCGTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA ATGGACGATTCGAACGAGCATAAAGAAAATGCATCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCAAAATCAGCGCCGTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA ATGGACGATTCGAACGAGCATAAAGAAAATGCATCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCAAAATCAGCGCCGTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS Homology
BLAST of CmoCh12G011860.1 vs. ExPASy TrEMBL
Match: A0A6J1FDP2 (uncharacterized protein LOC111444439 OS=Cucurbita moschata OX=3662 GN=LOC111444439 PE=4 SV=1) HSP 1 Score: 321.6 bits (823), Expect = 1.8e-84 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
BLAST of CmoCh12G011860.1 vs. ExPASy TrEMBL
Match: A0A6J1HQB7 (uncharacterized protein LOC111465710 OS=Cucurbita maxima OX=3661 GN=LOC111465710 PE=4 SV=1) HSP 1 Score: 314.3 bits (804), Expect = 2.9e-82 Identity = 157/161 (97.52%), Postives = 159/161 (98.76%), Query Frame = 0
BLAST of CmoCh12G011860.1 vs. ExPASy TrEMBL
Match: A0A5D3BFQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00930 PE=4 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58 Identity = 127/167 (76.05%), Postives = 136/167 (81.44%), Query Frame = 0
BLAST of CmoCh12G011860.1 vs. ExPASy TrEMBL
Match: A0A1S3CDF1 (uncharacterized protein LOC103499607 OS=Cucumis melo OX=3656 GN=LOC103499607 PE=4 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 3.0e-58 Identity = 126/167 (75.45%), Postives = 136/167 (81.44%), Query Frame = 0
BLAST of CmoCh12G011860.1 vs. ExPASy TrEMBL
Match: A0A0A0LL60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009350 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 1.9e-57 Identity = 126/165 (76.36%), Postives = 136/165 (82.42%), Query Frame = 0
BLAST of CmoCh12G011860.1 vs. TAIR 10
Match: AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 68.6 bits (166), Expect = 5.4e-12 Identity = 54/151 (35.76%), Postives = 77/151 (50.99%), Query Frame = 0
BLAST of CmoCh12G011860.1 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 49.7 bits (117), Expect = 2.6e-06 Identity = 28/55 (50.91%), Postives = 33/55 (60.00%), Query Frame = 0
BLAST of CmoCh12G011860.1 vs. TAIR 10
Match: AT5G14890.1 (NHL domain-containing protein ) HSP 1 Score: 47.4 bits (111), Expect = 1.3e-05 Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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