CmoCh12G002060.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G002060.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	dehydration-responsive element-binding protein 3-like
Location	Cmo_Chr12: 1361052 .. 1361696 (-)
Sequence length	645
RNA-Seq Expression	CmoCh12G002060.1
Synteny	CmoCh12G002060.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCTGACTCGAACGCTGTTCCAAAGAAAATCAAGCGCATCAGAAACCCAGAATCCAATTCCGATTCGAATTCCAGCAAGCACCCAGTTTACAGAGGCGTCCGGATGCGAAACTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGAAAGAAATCCCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCAGCTCGAGCCCACGACGTCGCCGCCTTAAGCATCAAAGGCAACTCCGCCATCCTTAATTTCCCCGACCTCGTCCACCTCCTCCCCCGCCCTGTCTCTCTCGCCCCTCGCGACATCCAAGCCGCCGCCACCCAAGCCGCCCACATGCACAATCTATCTCCTAACAACATTCCCACCACCGCCACCACCACCGACGACACTTCCGACGCCTCCGATGAACTCACCGAAATCGTCCAGCTTCCCTCTCTCGGCACCACCTACGACGGCGACTGCGGCGACTCCTTCGTTTTCCTTGACTACTCAACAGAGGATTCCGCCGCCTGGCTTTACCCACCGCCGTGGCTACCATCTCTCGAGGATTACGACGAAATTCAAAACGACGGTAAGATGGGAATGGGAATGGGATTCATTTCCACCAATTTCAAAGGATTACTGTGGGATTATTAA

mRNA sequence

ATGAGCTCTGACTCGAACGCTGTTCCAAAGAAAATCAAGCGCATCAGAAACCCAGAATCCAATTCCGATTCGAATTCCAGCAAGCACCCAGTTTACAGAGGCGTCCGGATGCGAAACTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGAAAGAAATCCCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCAGCTCGAGCCCACGACGTCGCCGCCTTAAGCATCAAAGGCAACTCCGCCATCCTTAATTTCCCCGACCTCGTCCACCTCCTCCCCCGCCCTGTCTCTCTCGCCCCTCGCGACATCCAAGCCGCCGCCACCCAAGCCGCCCACATGCACAATCTATCTCCTAACAACATTCCCACCACCGCCACCACCACCGACGACACTTCCGACGCCTCCGATGAACTCACCGAAATCGTCCAGCTTCCCTCTCTCGGCACCACCTACGACGGCGACTGCGGCGACTCCTTCGTTTTCCTTGACTACTCAACAGAGGATTCCGCCGCCTGGCTTTACCCACCGCCGTGGCTACCATCTCTCGAGGATTACGACGAAATTCAAAACGACGGTAAGATGGGAATGGGAATGGGATTCATTTCCACCAATTTCAAAGGATTACTGTGGGATTATTAA

Coding sequence (CDS)

ATGAGCTCTGACTCGAACGCTGTTCCAAAGAAAATCAAGCGCATCAGAAACCCAGAATCCAATTCCGATTCGAATTCCAGCAAGCACCCAGTTTACAGAGGCGTCCGGATGCGAAACTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGAAAGAAATCCCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCAGCTCGAGCCCACGACGTCGCCGCCTTAAGCATCAAAGGCAACTCCGCCATCCTTAATTTCCCCGACCTCGTCCACCTCCTCCCCCGCCCTGTCTCTCTCGCCCCTCGCGACATCCAAGCCGCCGCCACCCAAGCCGCCCACATGCACAATCTATCTCCTAACAACATTCCCACCACCGCCACCACCACCGACGACACTTCCGACGCCTCCGATGAACTCACCGAAATCGTCCAGCTTCCCTCTCTCGGCACCACCTACGACGGCGACTGCGGCGACTCCTTCGTTTTCCTTGACTACTCAACAGAGGATTCCGCCGCCTGGCTTTACCCACCGCCGTGGCTACCATCTCTCGAGGATTACGACGAAATTCAAAACGACGGTAAGATGGGAATGGGAATGGGATTCATTTCCACCAATTTCAAAGGATTACTGTGGGATTATTAA

Protein sequence

MSSDSNAVPKKIKRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSPNNIPTTATTTDDTSDASDELTEIVQLPSLGTTYDGDCGDSFVFLDYSTEDSAAWLYPPPWLPSLEDYDEIQNDGKMGMGMGFISTNFKGLLWDY

Homology

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BLAST of CmoCh12G002060.1 vs. ExPASy Swiss-Prot
Match: Q9LYD3 (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DREB3 PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.5e-49
Identity = 123/231 (53.25%), Postives = 150/231 (64.94%), Query Frame = 0


Query: 2   SSDSNAVPKKIKRIRN-PESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGT 61
           +S+S++V  K K  ++  ++    +S KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGT
Sbjct: 20  NSESDSVSDKSKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGT 79

Query: 62  FPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSP 121
           FP+PEMAARAHDVAALSIKG +AILNFP+L    PRPVSL+PRDIQ AA +AAHM   + 
Sbjct: 80  FPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPTTS 139

Query: 122 NNIPTTATTT--------------DDTSDASDELTEIVQLPSLGTTYDGD---CGDSFVF 181
            +  T+++++              D +   S+EL EIV+LPSLG +YD D    G+ FVF
Sbjct: 140 FSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNEFVF 199

Query: 182 LDYSTEDSAAWLYPPPWLPSLEDYDEIQNDGKMGMGMGFISTNF-KGLLWD 214
             Y + D    LYPPPW  S ED            G G IS NF  GL WD
Sbjct: 200 --YDSVDYC--LYPPPWGQSSED----------NYGHG-ISPNFGHGLSWD 235

[Close]

BLAST of CmoCh12G002060.1 vs. ExPASy Swiss-Prot
Match: Q39127 (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN=TINY PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-47
Identity = 107/180 (59.44%), Postives = 122/180 (67.78%), Query Frame = 0


Query: 25  NSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAI 84
           +S KHPVYRGVR RNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKG SAI
Sbjct: 29  DSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAI 88

Query: 85  LNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSPNNIPTTATTTDDTSDA-------- 144
           LNFPDL    PRP SL+PRDIQ AA +AAHM      +  ++ T +   S +        
Sbjct: 89  LNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQSFSSSSSLTFSSSQSSSSLESLVSS 148

Query: 145 ----SDELTEIVQLPSLGTTYDG--DCGDSFVFLDYSTEDSAAWLYPPPWLPSLEDYDEI 191
               S+EL EIV+LPSLG++YDG    G+ F+F D     +  W YPP W  S  DY  I
Sbjct: 149 SATGSEELGEIVELPSLGSSYDGLTQLGNEFIFSD----SADLWPYPPQW--SEGDYQMI 202

[Close]

BLAST of CmoCh12G002060.1 vs. ExPASy Swiss-Prot
Match: Q9M080 (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana OX=3702 GN=ERF043 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.5e-41
Identity = 104/222 (46.85%), Postives = 135/222 (60.81%), Query Frame = 0


Query: 19  ESNSD---SNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAA 78
           +S+SD     ++K PVYRGVRMR+WGKWVSEIREPRKKSRIWLGTFP+ EMA RAHDVAA
Sbjct: 3   DSSSDKEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAA 62

Query: 79  LSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHM-------------------- 138
           +SIKG SAILNFP+L  LLPRPVSL+PRD++AAAT+AA M                    
Sbjct: 63  MSIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAALMDFDTTAFRSDTETSETTTSN 122

Query: 139 ---------HNLSPNNIPTTATTTDDTSDASDELTEIVQLPSLGTTYDGDCGDSFVFLDY 198
                      +S ++   ++ T+ + S  SD+L EIV+LPSLGT+ +    + FV  D 
Sbjct: 123 KMSESSESNETVSFSSSSWSSVTSIEESTVSDDLDEIVKLPSLGTSLNE--SNEFVIFD- 182

Query: 199 STEDSAAWLYPPPWLPSLEDYDEIQNDGKMGMGMGFISTNFK 209
           S ED    +Y P WL   E+     N+    +    +  ++K
Sbjct: 183 SLED---LVYMPRWLSGTEEEVFTYNNNDSSLNYSSVFESWK 218

[Close]

BLAST of CmoCh12G002060.1 vs. ExPASy Swiss-Prot
Match: O80654 (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana OX=3702 GN=ERF037 PE=1 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.5e-38
Identity = 99/235 (42.13%), Postives = 140/235 (59.57%), Query Frame = 0


Query: 5   SNAVPKKIKRIRNPESNSDSNSSKH----PVYRGVRMRNWGKWVSEIREPRKKSRIWLGT 64
           S+ VP++     + + +  +N+ K     P YRGVRMR WGKWVSEIREPRKKSRIWLGT
Sbjct: 12  SSPVPEEEDHHHHQQDSHRTNTKKRVRSDPGYRGVRMRTWGKWVSEIREPRKKSRIWLGT 71

Query: 65  FPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSP 124
           F +PEMAARAHD AAL+IKG SA+LNFP+L   LPRP S +PRD+QAAA  AA M + SP
Sbjct: 72  FSTPEMAARAHDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAAAVAAAM-DFSP 131

Query: 125 NNI------PTT----------------------ATTTDDTSDASDELTEIVQLPSLGTT 184
           ++       PTT                      + ++++ +  ++EL+EIV+LPSL T+
Sbjct: 132 SSSSLVVSDPTTVIAPAETQLSSSSYSTCTSSSLSPSSEEAASTAEELSEIVELPSLETS 191

Query: 185 YDGDCGDSFVFLDYSTEDSAAWLYPPPWLPSLEDYDEIQNDGKMGMGMGFISTNF 208
           YD    + FV++D +   S+ W     ++ +   +    ++  + M   F S+NF
Sbjct: 192 YDESLSE-FVYVDSAYPPSSPW-----YINNCYSFYYHSDENGISMAEPFDSSNF 239

[Close]

BLAST of CmoCh12G002060.1 vs. ExPASy Swiss-Prot
Match: Q9LU18 (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana OX=3702 GN=ERF036 PE=2 SV=2)

HSP 1 Score: 158.3 bits (399), Expect = 9.7e-38
Identity = 92/187 (49.20%), Postives = 122/187 (65.24%), Query Frame = 0


Query: 13  KRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHD 72
           KR R+  S S S+S +HPVYRGVRMR+WGKWVSEIR+PRKK+RIWLGTF + +MAARAHD
Sbjct: 42  KRRRDSSSASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHD 101

Query: 73  VAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHM----HNLSPNNIPTTAT 132
           VAAL+IKG+SA+LNFP+L  L PRP S +P DIQ AA +AA M      L  +  P    
Sbjct: 102 VAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVVEEKLLEKDEAPEAPP 161

Query: 133 TTDDT-----SDASDELTEIVQLPSLGTTYDGDCGDSFVFLDYSTEDSAAWLYPPPWLPS 191
           +++ +     S+  + L +IV+LP++      +   S   L YS E    W+YP    P 
Sbjct: 162 SSESSYVAAESEDEERLEKIVELPNIEEGSYDESVTSRADLAYS-EPFDCWVYP----PV 221

[Close]

BLAST of CmoCh12G002060.1 vs. ExPASy TrEMBL
Match: A0A6J1GJB4 (dehydration-responsive element-binding protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111454379 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.4e-119
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MSSDSNAVPKKIKRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGT 60
           MSSDSNAVPKKIKRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGT
Sbjct: 1   MSSDSNAVPKKIKRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGT 60

Query: 61  FPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSP 120
           FPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSP
Sbjct: 61  FPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSP 120

Query: 121 NNIPTTATTTDDTSDASDELTEIVQLPSLGTTYDGDCGDSFVFLDYSTEDSAAWLYPPPW 180
           NNIPTTATTTDDTSDASDELTEIVQLPSLGTTYDGDCGDSFVFLDYSTEDSAAWLYPPPW
Sbjct: 121 NNIPTTATTTDDTSDASDELTEIVQLPSLGTTYDGDCGDSFVFLDYSTEDSAAWLYPPPW 180

Query: 181 LPSLEDYDEIQNDGKMGMGMGFISTNFKGLLWDY 215
           LPSLEDYDEIQNDGKMGMGMGFISTNFKGLLWDY
Sbjct: 181 LPSLEDYDEIQNDGKMGMGMGFISTNFKGLLWDY 214

[Close]

BLAST of CmoCh12G002060.1 vs. ExPASy TrEMBL
Match: A0A6J1KJP2 (dehydration-responsive element-binding protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111496321 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 2.5e-113
Identity = 207/214 (96.73%), Postives = 209/214 (97.66%), Query Frame = 0


Query: 1   MSSDSNAVPKKIKRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGT 60
           MSSDSNAVPKKIKRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGT
Sbjct: 1   MSSDSNAVPKKIKRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGT 60

Query: 61  FPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSP 120
           FPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRD+QAAA QAAHMHNLSP
Sbjct: 61  FPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAQAAHMHNLSP 120

Query: 121 NNIPTTATTTDDTSDASDELTEIVQLPSLGTTYDGDCGDSFVFLDYSTEDSAAWLYPPPW 180
           NNIPTT TTTDD SDASDELTEIVQLP+LGTTYDGDCGDSFVFLDYSTEDSAAWLYPPPW
Sbjct: 121 NNIPTT-TTTDDASDASDELTEIVQLPTLGTTYDGDCGDSFVFLDYSTEDSAAWLYPPPW 180

Query: 181 LPSLEDYDEIQNDGKMGMGMGFISTNFKGLLWDY 215
           LPSLEDYDEIQNDGK  MGMGFISTNFKGLLWDY
Sbjct: 181 LPSLEDYDEIQNDGK--MGMGFISTNFKGLLWDY 211

[Close]

BLAST of CmoCh12G002060.1 vs. ExPASy TrEMBL
Match: A0A5A7VBN9 (Ethylene-responsive transcription factor TINY-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003660 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 4.6e-75
Identity = 158/218 (72.48%), Postives = 176/218 (80.73%), Query Frame = 0


Query: 2   SSDSNAVPKKIKRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTF 61
           SSDSN  PK+I    N  SNS SN SKH VYRGVRMRNWGKWVSEIREPRKKSRIWLGTF
Sbjct: 20  SSDSNKKPKRI----NSNSNSSSN-SKHAVYRGVRMRNWGKWVSEIREPRKKSRIWLGTF 79

Query: 62  PSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSPN 121
           PSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRD+QAAA +AAHMHNLS N
Sbjct: 80  PSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSN 139

Query: 122 -NIPTTATTTDDTSDASDELTEIVQLPSLGTTYDG--DCGDSFVFLDYSTEDSAAWLYPP 181
            N     T ++ +S  SDEL+EIV+LP+LGT+YDG    G  FVF++ S  +SAAWLYPP
Sbjct: 140 ANTNNHNTNSNSSSAFSDELSEIVELPALGTSYDGGVGVGGEFVFVE-SELESAAWLYPP 199

Query: 182 PWLPSL-EDYDEIQNDGKMG-MGMGFISTNFKGLLWDY 215
           PW+ SL EDYD+I  DG  G +GMGF+S  FKG L+DY
Sbjct: 200 PWVQSLQEDYDDIDGDGDCGKLGMGFVSNGFKGFLFDY 231

[Close]

BLAST of CmoCh12G002060.1 vs. ExPASy TrEMBL
Match: Q75UJ6 (DREB-like protein OS=Cucumis melo OX=3656 GN=CMe-DREB1 PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.9e-73
Identity = 156/218 (71.56%), Postives = 174/218 (79.82%), Query Frame = 0


Query: 2   SSDSNAVPKKIKRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTF 61
           SSDSN  PK+I       SNS SN SKH VYRGVRMRNWGKWVSEIREPRKKSRIWLGTF
Sbjct: 20  SSDSNKKPKRI------NSNSSSN-SKHAVYRGVRMRNWGKWVSEIREPRKKSRIWLGTF 79

Query: 62  PSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSPN 121
           PSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRD+QAAA +AAHMHNLS N
Sbjct: 80  PSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSN 139

Query: 122 -NIPTTATTTDDTSDASDELTEIVQLPSLGTTYDG--DCGDSFVFLDYSTEDSAAWLYPP 181
            N     T ++ +S  SDEL+EIV+LP+LGT+YDG    G  FVF++ S  +SAAWLY P
Sbjct: 140 ANTNNHNTNSNSSSAFSDELSEIVELPALGTSYDGGVGVGGEFVFVE-SELESAAWLYQP 199

Query: 182 PWLPSL-EDYDEIQNDGKMG-MGMGFISTNFKGLLWDY 215
           PW+ SL EDYD+I  DG  G +GMGF+S  FKG L+DY
Sbjct: 200 PWVQSLQEDYDDIDGDGDCGKLGMGFVSNGFKGFLFDY 229

[Close]

BLAST of CmoCh12G002060.1 vs. ExPASy TrEMBL
Match: A0A0A0LPS6 (DREB-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G374590 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 4.8e-72
Identity = 155/218 (71.10%), Postives = 174/218 (79.82%), Query Frame = 0


Query: 2   SSDSNAVPKKIKRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTF 61
           SSDSN  PK+I    N  SNS+SN SK  VYRGVRMRNWGKWVSEIREPRKKSRIWLGTF
Sbjct: 20  SSDSNKKPKRI----NSNSNSNSN-SKLAVYRGVRMRNWGKWVSEIREPRKKSRIWLGTF 79

Query: 62  PSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSPN 121
           PSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRD+QAAA +AAHMHNLS N
Sbjct: 80  PSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSN 139

Query: 122 -NIPTTATTTDDTSDASDELTEIVQLPSLGTTYDG--DCGDSFVFLDYSTEDSAAWLYPP 181
            N     T ++ +S  SDEL+EIV+LP+LGT+YD     G  FVF++ S  +SAAWLYPP
Sbjct: 140 ANTNNHNTNSNSSSAFSDELSEIVELPALGTSYDEGVGVGGEFVFVE-SELESAAWLYPP 199

Query: 182 PWLPSL-EDYDEIQNDGKMG-MGMGFISTNFKGLLWDY 215
           PW+ SL EDYD+   DG  G +GMGF+S  FKG L+DY
Sbjct: 200 PWVQSLEEDYDDGDGDGDCGKLGMGFVSNGFKGFLFDY 231

[Close]

BLAST of CmoCh12G002060.1 vs. TAIR 10
Match: AT5G11590.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.7e-50
Identity = 123/231 (53.25%), Postives = 150/231 (64.94%), Query Frame = 0


Query: 2   SSDSNAVPKKIKRIRN-PESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGT 61
           +S+S++V  K K  ++  ++    +S KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGT
Sbjct: 20  NSESDSVSDKSKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGT 79

Query: 62  FPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSP 121
           FP+PEMAARAHDVAALSIKG +AILNFP+L    PRPVSL+PRDIQ AA +AAHM   + 
Sbjct: 80  FPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPTTS 139

Query: 122 NNIPTTATTT--------------DDTSDASDELTEIVQLPSLGTTYDGD---CGDSFVF 181
            +  T+++++              D +   S+EL EIV+LPSLG +YD D    G+ FVF
Sbjct: 140 FSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNEFVF 199

Query: 182 LDYSTEDSAAWLYPPPWLPSLEDYDEIQNDGKMGMGMGFISTNF-KGLLWD 214
             Y + D    LYPPPW  S ED            G G IS NF  GL WD
Sbjct: 200 --YDSVDYC--LYPPPWGQSSED----------NYGHG-ISPNFGHGLSWD 235

[Close]

BLAST of CmoCh12G002060.1 vs. TAIR 10
Match: AT5G25810.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 191.4 bits (485), Expect = 7.3e-49
Identity = 107/180 (59.44%), Postives = 122/180 (67.78%), Query Frame = 0


Query: 25  NSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAI 84
           +S KHPVYRGVR RNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKG SAI
Sbjct: 29  DSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAI 88

Query: 85  LNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSPNNIPTTATTTDDTSDA-------- 144
           LNFPDL    PRP SL+PRDIQ AA +AAHM      +  ++ T +   S +        
Sbjct: 89  LNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQSFSSSSSLTFSSSQSSSSLESLVSS 148

Query: 145 ----SDELTEIVQLPSLGTTYDG--DCGDSFVFLDYSTEDSAAWLYPPPWLPSLEDYDEI 191
               S+EL EIV+LPSLG++YDG    G+ F+F D     +  W YPP W  S  DY  I
Sbjct: 149 SATGSEELGEIVELPSLGSSYDGLTQLGNEFIFSD----SADLWPYPPQW--SEGDYQMI 202

[Close]

BLAST of CmoCh12G002060.1 vs. TAIR 10
Match: AT4G32800.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 169.1 bits (427), Expect = 3.9e-42
Identity = 104/222 (46.85%), Postives = 135/222 (60.81%), Query Frame = 0


Query: 19  ESNSD---SNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAA 78
           +S+SD     ++K PVYRGVRMR+WGKWVSEIREPRKKSRIWLGTFP+ EMA RAHDVAA
Sbjct: 3   DSSSDKEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAA 62

Query: 79  LSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHM-------------------- 138
           +SIKG SAILNFP+L  LLPRPVSL+PRD++AAAT+AA M                    
Sbjct: 63  MSIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAALMDFDTTAFRSDTETSETTTSN 122

Query: 139 ---------HNLSPNNIPTTATTTDDTSDASDELTEIVQLPSLGTTYDGDCGDSFVFLDY 198
                      +S ++   ++ T+ + S  SD+L EIV+LPSLGT+ +    + FV  D 
Sbjct: 123 KMSESSESNETVSFSSSSWSSVTSIEESTVSDDLDEIVKLPSLGTSLNE--SNEFVIFD- 182

Query: 199 STEDSAAWLYPPPWLPSLEDYDEIQNDGKMGMGMGFISTNFK 209
           S ED    +Y P WL   E+     N+    +    +  ++K
Sbjct: 183 SLED---LVYMPRWLSGTEEEVFTYNNNDSSLNYSSVFESWK 218

[Close]

BLAST of CmoCh12G002060.1 vs. TAIR 10
Match: AT1G77200.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-39
Identity = 99/235 (42.13%), Postives = 140/235 (59.57%), Query Frame = 0


Query: 5   SNAVPKKIKRIRNPESNSDSNSSKH----PVYRGVRMRNWGKWVSEIREPRKKSRIWLGT 64
           S+ VP++     + + +  +N+ K     P YRGVRMR WGKWVSEIREPRKKSRIWLGT
Sbjct: 12  SSPVPEEEDHHHHQQDSHRTNTKKRVRSDPGYRGVRMRTWGKWVSEIREPRKKSRIWLGT 71

Query: 65  FPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSP 124
           F +PEMAARAHD AAL+IKG SA+LNFP+L   LPRP S +PRD+QAAA  AA M + SP
Sbjct: 72  FSTPEMAARAHDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAAAVAAAM-DFSP 131

Query: 125 NNI------PTT----------------------ATTTDDTSDASDELTEIVQLPSLGTT 184
           ++       PTT                      + ++++ +  ++EL+EIV+LPSL T+
Sbjct: 132 SSSSLVVSDPTTVIAPAETQLSSSSYSTCTSSSLSPSSEEAASTAEELSEIVELPSLETS 191

Query: 185 YDGDCGDSFVFLDYSTEDSAAWLYPPPWLPSLEDYDEIQNDGKMGMGMGFISTNF 208
           YD    + FV++D +   S+ W     ++ +   +    ++  + M   F S+NF
Sbjct: 192 YDESLSE-FVYVDSAYPPSSPW-----YINNCYSFYYHSDENGISMAEPFDSSNF 239

[Close]

BLAST of CmoCh12G002060.1 vs. TAIR 10
Match: AT3G16280.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 158.3 bits (399), Expect = 6.9e-39
Identity = 92/187 (49.20%), Postives = 122/187 (65.24%), Query Frame = 0


Query: 13  KRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHD 72
           KR R+  S S S+S +HPVYRGVRMR+WGKWVSEIR+PRKK+RIWLGTF + +MAARAHD
Sbjct: 42  KRRRDSSSASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHD 101

Query: 73  VAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHM----HNLSPNNIPTTAT 132
           VAAL+IKG+SA+LNFP+L  L PRP S +P DIQ AA +AA M      L  +  P    
Sbjct: 102 VAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVVEEKLLEKDEAPEAPP 161

Query: 133 TTDDT-----SDASDELTEIVQLPSLGTTYDGDCGDSFVFLDYSTEDSAAWLYPPPWLPS 191
           +++ +     S+  + L +IV+LP++      +   S   L YS E    W+YP    P 
Sbjct: 162 SSESSYVAAESEDEERLEKIVELPNIEEGSYDESVTSRADLAYS-EPFDCWVYP----PV 221

The following BLAST results are available for this feature:

BLAST of CmoCh12G002060.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYD3	2.5e-49	53.25	Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702...	[more]
Q39127	1.0e-47	59.44	Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M080	5.5e-41	46.85	Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana OX=3702 ...	[more]
O80654	2.5e-38	42.13	Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LU18	9.7e-38	49.20	Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmoCh12G002060.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJB4	1.4e-119	100.00	dehydration-responsive element-binding protein 3-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1KJP2	2.5e-113	96.73	dehydration-responsive element-binding protein 3-like OS=Cucurbita maxima OX=366...	[more]
A0A5A7VBN9	4.6e-75	72.48	Ethylene-responsive transcription factor TINY-like OS=Cucumis melo var. makuwa O...	[more]
Q75UJ6	1.9e-73	71.56	DREB-like protein OS=Cucumis melo OX=3656 GN=CMe-DREB1 PE=2 SV=1	[more]
A0A0A0LPS6	4.8e-72	71.10	DREB-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G374590 PE=4 SV=1	[more]

BLAST of CmoCh12G002060.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11590.1	1.7e-50	53.25	Integrase-type DNA-binding superfamily protein	[more]
AT5G25810.1	7.3e-49	59.44	Integrase-type DNA-binding superfamily protein	[more]
AT4G32800.1	3.9e-42	46.85	Integrase-type DNA-binding superfamily protein	[more]
AT1G77200.1	1.8e-39	42.13	Integrase-type DNA-binding superfamily protein	[more]
AT3G16280.1	6.9e-39	49.20	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 54..70 score: 61.71 coord: 32..43 score: 71.21
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 31..94 e-value: 9.2E-34 score: 128.2
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 30..80 e-value: 4.9E-14 score: 52.3
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 31..88 score: 23.208761
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 32..90 e-value: 5.00138E-33 score: 111.595
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 31..89 e-value: 7.4E-24 score: 85.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR31985:SF220	DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED	coord: 12..214
None	No IPR available	PANTHER	PTHR31985	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	coord: 12..214
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 31..89

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh12G002060	CmoCh12G002060	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh12G002060.1:exon:1738	CmoCh12G002060.1:exon:1738	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh12G002060.1:cds	CmoCh12G002060.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh12G002060.1	CmoCh12G002060.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity