CmoCh11G016810.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G016810.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr11: 11923382 .. 11926895 (-)
Sequence length423
RNA-Seq ExpressionCmoCh11G016810.1
SyntenyCmoCh11G016810.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGTGTAATTTTTAAGCTATTGATTTTGAAATCTGAGGCTACCATTGTGGAGTATCCGGATCTATTGCTAAGAGCTTCACTTTATGATGAATGATAATCTGAAGAATTCTGTGGACAAAAAGTTCGATTTCATGTATAAATTAGTTTTTTAATCAGTTGTTCGTGTCATTTTTTTATTTATTATTATCTGGTAATTAGGTGGTTTACGTGCTAATAATTTCACGAGGAAGGATGAAATTTTGTCTTTGCGATACTCAAATCTTATAACTGTGTTGTTCAATGTGCTATGATTCGGGTGGTTTGTAGAAGTATAAATTCATCTTACTAAGCATGAATGATGTAGCAACAATATCATAATTAATGACTGCATATATCTATCTATAGCACCCGATTTTGTAGCATATGACATTTCTATTTCTAAGTAGTCTACCATGAAATTTTGTTTTCCTAACTCTCCATTATTGACTGCATATATCTATCTATAATCTAATTAATATTTAGCAGAAACCGTGAGCCTGGGCTTTCGATGGATTTCCAGACTGCAAGCAGTCGATGGGAGGGACAGTGGAGGTTTTCAGTTCACCGTATGCCTTCCAACAGAATGGTTCATTTGAGCGGCTGCTCCCCTCGAGCTGAATGGTGTCTAATGTCACACCAGTGCAGGGAAGACTGTCACTGCAGGCTAAATGGACCGGCGTTGAAGTGTATGTTCCCCTAATGTTTACATAGTTTACTCCTGAAATTGCTACTGCAGAAGATCCATTATGGCATCTACCCCCATCGCAGTAGTATTGGTCTATCATTACTGGAGTCCCAACGTCTGAAACTTGAATGTTTGAGAACAGTATTCCCTGTACTGAGCCTGAACCACCCTGTAATGGGAAAGTTAAATGGCCTTGTGTGAGCTGTTGAATTGAAAAGGGGGTTCTGGCAAACAATATTGCTAAGAATCACGACTCTTCACAATGGTCTGATATTGTCTACTTTGAGCATAGGCTTTCATGGTTTTGCTTTGGGCTTCTCCAAAAAGCCTCTTACCAATGGAGATGTATTCTTTACTTATAAACCCATTACGTAAACCCATGATCATTCCCTAAATTAGCCAATGTGGGACTCCCTACCAACCATCCTCAATAATCTCCCCTCAAACAAAGTACACTATAGAGGCCTCCCTTGAGGCCTATAGAGCCCTCGAGTAGTCTCTCCTTAATCGAGACTCGACTCATTCTCTGTAGTCCTCGAACAAAGTACACCCTTTGTTCGACACCTTCCAGACTCGCAACTTCTTTGTTCGACATTTGAAGACTCTATTGACATGGCTAAGTTAAGGGCATGGCTCTGATATCATGTTAAGAATCACGACTCTCCACAATGGTATGATGTTATTCACTTTGAGTATAGTCTCTCATAATTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGAAAATGTATTCCTTACGTATAAATCCATGAGCATTTCCTAAATTAGCCTATGTGAGACTCCCTCCCAACAATCCTCAACAAATACAACTGAAAAAGGTTTGTCTAAATAAAGATTGGGGTTTAGGGAGTCAAAATTAGGGAGAAAGGTTTTATATACCTGCCATGTTTTTATTCTGACCCCATTCATTGTGTTCTGCAGTTTGACGTCACGGACGGTGACATTGGAAACACATGCTTTTGTTTGATCACGTCCTAGTCCTCCAATGCTAATTCCATGGCCTGGTCCACAGTTCACATCGTGTATGTATATGGACGAGCTTCCAGTTTGTATGGATATACAATCATCCCCTGTAGTTTGATTTCATTCATGTAAGTTTCATTATGCTACGGATTTTTTAAATTCCATACTAGTTTTCATCGATGACATGCTTTTTCAAAACAAGTAGATCTTCCTTCATAATTACAGGCTGGTGAACAGGGAAATCAAGTGCACCGTAACATCATGTTTTAGGACCATATTCTACTTGAACTGTTAAGCAAAAAAGAAATTGAAAACCGCCTTTAAGTGACTGATGCTTGAAGATCACCTTTCTGACTTTTAACCAATTGGATTACCTTCTATTTATCTGCCTATGTAAAGTTGGGTTGTATTTTAAAGCCAAATTCTTATGCTAAATTAAGCCATCTTTGCAGTTAGTGCTCAAAATTGGGAATTACCACAAGCTAGATTGCTGTTCGAAATGATCACATTCTGGGAGTTCTGCAAGTGAATTCCGTCCGTGTTTGGGCTGTCACCAGGCGATGAAATGGTTAATGAAGAAACCGGAACTGATGTGCAACTATCAAATTTCAGGTGAGCCTGTTGGCTGTTTTGGATGGTTATTCCAGTGACTGTCACTCCATCACTTCCGTAGAACCTAAGTGCCTGCACAAGAATATAAGAGTCACAAATAGAAATCTCTCTTTAATCCATTTGTTCTATTATTGTCAAGTTTAAGCCAAGGCTGTACTGTTAGTTTGGTTCTTGGAAGTCTTCCGCTACTGCTTTCCTTGTCCTGTTGCATGAGTAAATCTGTGATTAGGAAGCTGTGTGACTTAAAATATGAAATCCCTTCTAATCCGAGTTGATTTATGAAAATACCAAATTTTCGTCAGTAGGATCGTCTGTGGGCGAGTCGTCGGTCCACCAAACGGAGCCTTGTCCATCAATAGTACCTGTACCTTTCACTGTTATCCCTTTAAGTTTAGTGAATTCAATCCATTGCAAGAGACCTGAACCCCAAGCACTAGGGCTTGTAGGAGCAATGATTTTGCCATCCAACTGCATGTCATGTAGGAGATGTACTTTAAAATATGTCATCAAGAATTTTTTCTGGAAAAGTTCTTCATAGAACAGTTTCCCATAAAGTTGATAGAATCCTTTTAAAAAGTCATGCTACTGTGCACTTAAAAACACTTTCTGAAATCAACTTCCAAACTAGACTTCAGTGTATTGATATTGACCTGAAACACAATGTTTGGTTATTGATATTGACCTGAAACACAATGTTTGGTTGGCAATTAGGACCAGAGAACGAAATGGGGCCAACGAGGAATTCATAACCTGAGGGAACCTCCACCATTGATCCCTCTGCATTGCAAGCTGATTCCCAAGCTGCCTGAAATGCCTGGTATGTATACATTGTCAAGTACTTCAGTTAATTTTCAATTCTGAAAAGTTTATATGCGGAGGATTATTGGGAGTGAGTCCATGTTGGTTAATTTAGTGGAAGATCATGGATTTATAAGTAAAGGAATACATCTTCATTGGTACGACGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCACTATGGAGAATCGTGATTCCTAACAATTTCTATGTAATGAAAATGATAGGCAAACCTAAATTCACCTTGGTGTCATCTTCCTCTCCATCGCCTTTAGCTCCAAAGTCCAACACATTAAAACTACCAGAACCACCTTCACTTGCTAATGAGGCTCCCACAACATCCTCACTATCCACATGA

mRNA sequence

ATGGTAGTAAACCGTGAGCCTGGGCTTTCGATGGATTTCCAGACTGCAAGCAGTCGATGGGAGGGACAGTGGAGGTTTTCAGTTCACCGTATGCCTTCCAACAGAATGGTTCATTTGAGCGGCTGCTCCCCTCGAGCTGAATGGTGTCTAATGTCACACCAGTGCAGGGAAGACTGTCACTGCAGGCTAAATGGACCGGCGTTGAAGTTAGGATCGTCTGTGGGCGAGTCGTCGGTCCACCAAACGGAGCCTTGTCCATCAATAGACCAGAGAACGAAATGGGGCCAACGAGGAATTCATAACCTGAGGGAACCTCCACCATTGATCCCTCTGCATTGCAAGCTGATTCCCAAGCTGCCTGAAATGCCTGAACCACCTTCACTTGCTAATGAGGCTCCCACAACATCCTCACTATCCACATGA

Coding sequence (CDS)

ATGGTAGTAAACCGTGAGCCTGGGCTTTCGATGGATTTCCAGACTGCAAGCAGTCGATGGGAGGGACAGTGGAGGTTTTCAGTTCACCGTATGCCTTCCAACAGAATGGTTCATTTGAGCGGCTGCTCCCCTCGAGCTGAATGGTGTCTAATGTCACACCAGTGCAGGGAAGACTGTCACTGCAGGCTAAATGGACCGGCGTTGAAGTTAGGATCGTCTGTGGGCGAGTCGTCGGTCCACCAAACGGAGCCTTGTCCATCAATAGACCAGAGAACGAAATGGGGCCAACGAGGAATTCATAACCTGAGGGAACCTCCACCATTGATCCCTCTGCATTGCAAGCTGATTCCCAAGCTGCCTGAAATGCCTGAACCACCTTCACTTGCTAATGAGGCTCCCACAACATCCTCACTATCCACATGA

Protein sequence

MVVNREPGLSMDFQTASSRWEGQWRFSVHRMPSNRMVHLSGCSPRAEWCLMSHQCREDCHCRLNGPALKLGSSVGESSVHQTEPCPSIDQRTKWGQRGIHNLREPPPLIPLHCKLIPKLPEMPEPPSLANEAPTTSSLST
Homology
The following BLAST results are available for this feature:
BLAST of CmoCh11G016810.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G016810.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G016810.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G016810.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..140

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh11G016810CmoCh11G016810gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh11G016810.1:exon:9910CmoCh11G016810.1:exon:9910exon
CmoCh11G016810.1:exon:9911CmoCh11G016810.1:exon:9911exon
CmoCh11G016810.1:exon:9912CmoCh11G016810.1:exon:9912exon
CmoCh11G016810.1:exon:9913CmoCh11G016810.1:exon:9913exon
CmoCh11G016810.1:exon:9914CmoCh11G016810.1:exon:9914exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh11G016810.1:cdsCmoCh11G016810.1:cds_5CDS
CmoCh11G016810.1:cdsCmoCh11G016810.1:cds_4CDS
CmoCh11G016810.1:cdsCmoCh11G016810.1:cds_3CDS
CmoCh11G016810.1:cdsCmoCh11G016810.1:cds_2CDS
CmoCh11G016810.1:cdsCmoCh11G016810.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh11G016810.1CmoCh11G016810.1-proteinpolypeptide